BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00017360
         (244 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_171855.1| pentatricopeptide repeat-containing protein [Ar...    64   2e-08
ref|XP_006306944.1| hypothetical protein CARUB_v10008524mg [Caps...    60   4e-07
ref|XP_002892169.1| pentatricopeptide repeat-containing protein ...    58   1e-06
ref|XP_004248470.1| PREDICTED: pentatricopeptide repeat-containi...    56   6e-06

>ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
           gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18
           [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 660

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
 Frame = +1

Query: 13  MRKTFRKPFSTITIPLL-KPH-----HRLDRNVEATFLLSRFKKQCPRSHFASSPRWVFS 174
           MR+ +RKPFS   +PLL +PH     H L +N +    LS   K  P S   +S RWVF+
Sbjct: 1   MRRFYRKPFS---VPLLNRPHCSSQSHCLYKNGD---FLSDDSKCSPLSSSRTSVRWVFN 54

Query: 175 FASQLPPPEWVQPFNNLSDLVK 240
            +S LPPPEW++PFN++SDLVK
Sbjct: 55  -SSSLPPPEWIEPFNDVSDLVK 75


>ref|XP_006306944.1| hypothetical protein CARUB_v10008524mg [Capsella rubella]
           gi|482575655|gb|EOA39842.1| hypothetical protein
           CARUB_v10008524mg [Capsella rubella]
          Length = 663

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 13  MRKTFRKPFSTITIPLLKPHHRLDRNV---EATFLLSRFKKQCPRSHFASSPRWVFSFAS 183
           MR+ +RKPFS + +   +PHH            FLL    K  P S   +S RWVF+  S
Sbjct: 1   MRRFYRKPFS-VALLRNRPHHSSQSRCVYKNDGFLLDD-SKCLPLSSSRTSVRWVFNSIS 58

Query: 184 QLPPPEWVQPFNNLSDLVK 240
            LPPPEWV+PFN++SDLVK
Sbjct: 59  -LPPPEWVEPFNDVSDLVK 76


>ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338011|gb|EFH68428.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 662

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
 Frame = +1

Query: 13  MRKTFRKPFSTITIPLLKPHHRLDRNV---EATFLLSRFKKQCPRSHFASSPRWVFSFAS 183
           MR+ +RKPFS   + LL   H   +++   +    LS   K  P S   +S RWVF+ +S
Sbjct: 1   MRRFYRKPFS---LALLNRPHCSSQSLCLYKNGDFLSDDSKCLPLSSSRTSVRWVFN-SS 56

Query: 184 QLPPPEWVQPFNNLSDLVK 240
            LPPPEW++PFN++SDLVK
Sbjct: 57  SLPPPEWIEPFNDVSDLVK 75


>ref|XP_004248470.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Solanum lycopersicum]
          Length = 711

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +1

Query: 103 FLLSRFKKQCPRSHFASSPRWVFSFASQLPPPEWVQPFNNLSDLVKD 243
           F + +FKK     +F S P+WVF+  S LPPPEWVQPF +LSDLV D
Sbjct: 87  FRVPKFKKPYFYVNFTSKPKWVFT-GSNLPPPEWVQPFVDLSDLVTD 132