BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00015448
         (1260 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   562   e-157
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl...   559   e-157
ref|XP_006348096.1| PREDICTED: RNA pseudouridine synthase 6, chl...   559   e-157
ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl...   559   e-157
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor...   556   e-156
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe...   555   e-155
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl...   555   e-155
gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus...   554   e-155
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ...   553   e-155
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   552   e-155
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor...   551   e-154
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr...   550   e-154
ref|XP_006449063.1| hypothetical protein CICLE_v10015055mg [Citr...   550   e-154
ref|XP_002304926.2| pseudouridine synthase family protein [Popul...   550   e-154
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl...   547   e-153
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   543   e-152
ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Caps...   541   e-151
ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thalian...   534   e-149
ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   533   e-149
ref|XP_002867828.1| pseudouridine synthase family protein [Arabi...   533   e-149

>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  562 bits (1448), Expect = e-157
 Identities = 254/336 (75%), Positives = 299/336 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PP TATPEQ++++E+ TAPSVL+KR+SIKGKTVREAQKTFRI+H D+++E GTYLRVH
Sbjct: 137  PRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVDQYLEAGTYLRVH 196

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVT+ +VVLDKPAG SVGGT DNIEESCATF +RALG   P
Sbjct: 197  VHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFATRALGLTTP 256

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLAL  +PV +GVI +YMRP+
Sbjct: 257  LKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGVIKNYMRPV 316

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRLLSE+FV+GWHLCQLEVL+C+KVPWP   +++K+ +E+CGWP +DFAYEC INLL
Sbjct: 317  NIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFAYECKINLL 376

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAASGAP+VGDSMYMPAA+A+M NPG+NP+ K  KQYT+ES+    V EW
Sbjct: 377  TGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYTNESDESMAVAEW 436

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            +AQHGKEP VAIGLQA +ISWD+G+H Y+AG PWW+
Sbjct: 437  VAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  559 bits (1441), Expect = e-157
 Identities = 256/336 (76%), Positives = 293/336 (87%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPP AT EQ+++++EVT PSVLRKRASIKGKTVREAQKTFR++H D+FVEPGTYLRVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPR YEIDW SRIIAV ES+VVLDKPAG SVGGTTDNIEESCATF +RALG   P
Sbjct: 202  VHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L+TTHQIDNCTEGCVVLAR K+YCS+FHGKIREKKVKKLYLAL  +P+  G+ITHYMRPI
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPI 321

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SEDF+ GWHLCQLEVL+C+K+PWPT  +Q K+ +E+CGWP QD+AYEC INLL
Sbjct: 322  NMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLL 381

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TG+THQIRAQ AA  AP++GDSMYMPAAIA + NPG+NP+ K  K ++SES     V  W
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSESEKETAVVNW 441

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            +AQHGKEPSVAIGLQA QISWDD EHFYEAG PWW+
Sbjct: 442  MAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 477


>ref|XP_006348096.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X3 [Solanum tuberosum]
          Length = 440

 Score =  559 bits (1441), Expect = e-157
 Identities = 260/336 (77%), Positives = 296/336 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTA+PEQ+K+YEEVT PS+LR+R SIKGKTVREAQKTF+I+  DE VE GTYLRVH
Sbjct: 105  PKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVREAQKTFKITRADEIVEAGTYLRVH 164

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVT+ +VVLDKPAG SVGGTTDNIEESCATF +RALGF AP
Sbjct: 165  VHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSAP 224

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            LLTTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLAL  APV IG++THYMRPI
Sbjct: 225  LLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAAAPVPIGILTHYMRPI 284

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SEDFV GW LCQLEVL+CKKVPWP+  +Q+ +++E+CGW  +DFAYEC INLL
Sbjct: 285  NMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQRTYNLEDCGWALKDFAYECQINLL 344

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA  AP+VGDSMYMPAAIA++V PG NP+ K  K Y++E++    ++EW
Sbjct: 345  TGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSLAIDEW 404

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IAQHGKEPSVA+GLQA QISWDDG+H Y A  PWW+
Sbjct: 405  IAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 440


>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 483

 Score =  559 bits (1441), Expect = e-157
 Identities = 260/336 (77%), Positives = 296/336 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTA+PEQ+K+YEEVT PS+LR+R SIKGKTVREAQKTF+I+  DE VE GTYLRVH
Sbjct: 148  PKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVREAQKTFKITRADEIVEAGTYLRVH 207

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVT+ +VVLDKPAG SVGGTTDNIEESCATF +RALGF AP
Sbjct: 208  VHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSAP 267

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            LLTTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLAL  APV IG++THYMRPI
Sbjct: 268  LLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAAAPVPIGILTHYMRPI 327

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SEDFV GW LCQLEVL+CKKVPWP+  +Q+ +++E+CGW  +DFAYEC INLL
Sbjct: 328  NMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQRTYNLEDCGWALKDFAYECQINLL 387

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA  AP+VGDSMYMPAAIA++V PG NP+ K  K Y++E++    ++EW
Sbjct: 388  TGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSLAIDEW 447

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IAQHGKEPSVA+GLQA QISWDDG+H Y A  PWW+
Sbjct: 448  IAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 483


>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
            lycopersicum]
          Length = 448

 Score =  556 bits (1432), Expect = e-156
 Identities = 258/336 (76%), Positives = 295/336 (87%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTA+PEQ+K+YEEVT PSVLRKR SIKGKTVREAQKTF+I+  DE VE GTYLRVH
Sbjct: 113  PKPPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTVREAQKTFKITRADEIVEAGTYLRVH 172

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVT+ +VVLDKPAG SVGGTTDNIEESCATF +RALGF AP
Sbjct: 173  VHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSAP 232

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            LLTTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKV+KLYLAL  APV IG++THYMRPI
Sbjct: 233  LLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVRKLYLALAAAPVPIGILTHYMRPI 292

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+S DFV GW LCQLEVL+C+KVPWP+  +Q+ +++E+CGW  +D+AYEC INLL
Sbjct: 293  NMAPRLVSRDFVKGWLLCQLEVLECQKVPWPSSEIQRTYNLEDCGWALKDYAYECQINLL 352

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA  AP+VGDSMYMPAAIA++V PG NP+ K  K Y++E++    ++EW
Sbjct: 353  TGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSLAIDEW 412

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IAQHGKEPSVA+GLQA QISWDDG+H Y A  PWW+
Sbjct: 413  IAQHGKEPSVAVGLQACQISWDDGQHCYGARMPWWR 448


>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
          Length = 477

 Score =  555 bits (1431), Expect = e-155
 Identities = 255/336 (75%), Positives = 296/336 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTATPEQM++++EVTAPSVL+ RASIKGKTVREAQKTFRI+H DEFVE GTYLRVH
Sbjct: 140  PKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHADEFVEAGTYLRVH 199

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAV+E  VVLDKPAG +VGGTTDNIEESCATF +RALG   P
Sbjct: 200  VHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCATFATRALGLTTP 259

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLAL  APV  G+ITHYMRPI
Sbjct: 260  LNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGIITHYMRPI 319

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SEDF++ W LCQLEV++CK++PWP   V++K+ +E+CGWP +D+AYEC INLL
Sbjct: 320  NVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVEDCGWPSKDYAYECKINLL 379

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQ+RAQLAA GAPIVGDSMYMPAA+A+M +PG+NP+ +  K YT+E++    V EW
Sbjct: 380  TGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYKKHYTTENDKETAVAEW 439

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IA+HGKEP+VAIGLQA QISWDDG+H +EA  PWW+
Sbjct: 440  IARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475


>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  555 bits (1430), Expect = e-155
 Identities = 257/336 (76%), Positives = 288/336 (85%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPP AT EQ+++++EVT PSVLRKRASIKGKTVREAQKTFR++H D+FVEPGTYLRVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKR PRCYEIDW SRII V ES+VVLDKPAG SVGGTTDNIEESCATF +RALG   P
Sbjct: 202  VHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L+TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKK YLAL   P+  G+ITHYMRPI
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPI 321

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            +MAPRL+SEDF+ GWHLCQLEVL+C+KVPWP   +Q K+ IE+CGWP QD+AYEC INLL
Sbjct: 322  DMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLL 381

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TG+THQIRAQ AA  AP++GDSMYMPAAIA M NPG+NP+ K  K ++SES     V  W
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSESEKETAVVNW 441

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IAQHGKEPSVAIGLQA QISWDD EHFYEA  PWW+
Sbjct: 442  IAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 477


>gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus vulgaris]
          Length = 478

 Score =  554 bits (1428), Expect = e-155
 Identities = 255/336 (75%), Positives = 292/336 (86%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPP+AT EQ+++++EVT PSVLR+RASIKGKTVREAQKTFR++H D+FVEPGTYLRVH
Sbjct: 142  PQPPPSATEEQIRVFKEVTEPSVLRQRASIKGKTVREAQKTFRVTHADQFVEPGTYLRVH 201

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCYEIDW SRII+V ES+VVLDKPAG SVGGTTDNIEESCATF +RALG  AP
Sbjct: 202  VHPKRFPRCYEIDWRSRIISVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAP 261

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L+TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLAL  +P+  G+ITHYMRPI
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALASSPLPTGIITHYMRPI 321

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SEDF+ GW +CQLE+ +C+KVPWPT  +Q K+ +E+CGWP QDFAYEC INLL
Sbjct: 322  NMAPRLISEDFIKGWLMCQLEIQECRKVPWPTPSIQDKYCVEDCGWPYQDFAYECKINLL 381

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQ AA  AP+VGDSMYMPAAI  M NPG+NP+ K  + ++SES     V  W
Sbjct: 382  TGRTHQIRAQFAACRAPLVGDSMYMPAAIGDMSNPGLNPFGKYKRDFSSESEKETAVVNW 441

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            IAQHGKEP VAIGLQA QISWDD +HFYE+G PWW+
Sbjct: 442  IAQHGKEPGVAIGLQACQISWDDDDHFYESGSPWWR 477


>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 491

 Score =  553 bits (1424), Expect = e-155
 Identities = 260/336 (77%), Positives = 297/336 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPP+ATPEQ++I++EVTAPSVL KR SI+GKTVREAQKTFRI+H D+FVE GTYLRVH
Sbjct: 153  PQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRVH 212

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCYEIDW SRIIAVT+S+VVLDKPAG SVGGTTDNIEESCATF +RALGF  P
Sbjct: 213  VHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFSTP 272

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLYLALT AP+ IGVITHYMRPI
Sbjct: 273  LKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRPI 332

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SEDF+ GW+LCQLEV++CKKVPWP   +Q+ + IE+ GWP +D AYEC INLL
Sbjct: 333  NMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLL 392

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQ+RAQLAA GAPI+GDSMYMP  IA++ NPG+NP+  K K++TSE++    + EW
Sbjct: 393  TGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPF-GKYKKHTSENDKEIAITEW 451

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            I+Q GKEPSVAIGLQA QISWDDGEHFY+A  PWW+
Sbjct: 452  ISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWR 487


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  552 bits (1423), Expect = e-155
 Identities = 256/335 (76%), Positives = 298/335 (88%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPP+ATPEQ+++++EVTAPSVLRKR SIKGKT+REAQKTFRI+  +EFVE GTYLRVH
Sbjct: 137  PEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAGTYLRVH 196

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCYEIDW SRIIAVTES+VVLDKPAG SVGGTTDNIEESCATF +RALG   P
Sbjct: 197  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTTP 256

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKKLY AL  AP+ IG++THYMRP+
Sbjct: 257  LRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVTHYMRPV 316

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SEDF+ GW+LCQLEVL+CK+VPWP+  +++K+ IE+ GWP ++ A++C INLL
Sbjct: 317  NIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFKCKINLL 376

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA GAPIVGDSMYMPAAIA++ +PG+NP+ K  K+YT+E++    V EW
Sbjct: 377  TGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDRETAVAEW 436

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWW 1006
            IAQHGKEP VAIGLQA QISWDDGEHFY+AG PWW
Sbjct: 437  IAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 477

 Score =  551 bits (1420), Expect = e-154
 Identities = 253/336 (75%), Positives = 293/336 (87%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTATPEQM++Y+EVTAPSVL+KR SIKGKTVREAQKTFRI+H D++VE GTYLRVH
Sbjct: 140  PKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREAQKTFRITHADQYVEDGTYLRVH 199

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SR+IAVTE  VVLDKPAG +VGGTTDNIEESCATFTSRALG   P
Sbjct: 200  VHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGGTTDNIEESCATFTSRALGLSTP 259

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L+TTHQIDNCTEGCVVLAR K+YCSVFHGKIREKKVKKLYLAL  APV +G ITHYMRPI
Sbjct: 260  LMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKKLYLALAAAPVPLGTITHYMRPI 319

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SED ++ W LCQLEV++CKKVPWP+  +++++ +E+CGWP +D+AYEC INLL
Sbjct: 320  NVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEEEYGVEDCGWPSKDYAYECKINLL 379

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TG+THQIRAQLAA G P+VGDSMYMPAAIA+M NP +NP+ K  K Y  E++    V EW
Sbjct: 380  TGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENPELNPFGKHKKHYAGENDEEIAVTEW 439

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            +A+HGKEP VAIGLQA QISWDDGEH +EA  PWW+
Sbjct: 440  MARHGKEPIVAIGLQACQISWDDGEHSFEARAPWWR 475


>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551677|gb|ESR62306.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 487

 Score =  550 bits (1418), Expect = e-154
 Identities = 257/336 (76%), Positives = 291/336 (86%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPP TATPEQM++++EVT PSVL KR+SIKGKTVREAQKTFRI+H D+ VE GTYLRVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVTESHVVLDKPAG SVGGTTDNIEESCATF SRALG   P
Sbjct: 203  VHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR +EYCS+FH KIREKKVKKLYLALT AP+ +G++THYMRPI
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPI 322

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SEDF+ GW+LCQLEV++CKKVPWP   V K + IE+CGWP +D+AYEC I LL
Sbjct: 323  NIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 382

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQ+RAQLAA GAPIVGDSMYMPAAIAQ+ +PG+NP+ K  K+Y S+ +    V EW
Sbjct: 383  TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 442

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            I+QHGKEPSVAIGLQA  ISWDDGE  YEA  PWW+
Sbjct: 443  ISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_006449063.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551674|gb|ESR62303.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 392

 Score =  550 bits (1418), Expect = e-154
 Identities = 257/336 (76%), Positives = 291/336 (86%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPP TATPEQM++++EVT PSVL KR+SIKGKTVREAQKTFRI+H D+ VE GTYLRVH
Sbjct: 48   PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 107

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVTESHVVLDKPAG SVGGTTDNIEESCATF SRALG   P
Sbjct: 108  VHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 167

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR +EYCS+FH KIREKKVKKLYLALT AP+ +G++THYMRPI
Sbjct: 168  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPI 227

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SEDF+ GW+LCQLEV++CKKVPWP   V K + IE+CGWP +D+AYEC I LL
Sbjct: 228  NIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 287

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQ+RAQLAA GAPIVGDSMYMPAAIAQ+ +PG+NP+ K  K+Y S+ +    V EW
Sbjct: 288  TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 347

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            I+QHGKEPSVAIGLQA  ISWDDGE  YEA  PWW+
Sbjct: 348  ISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 383


>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
            gi|550340110|gb|EEE85437.2| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 470

 Score =  550 bits (1418), Expect = e-154
 Identities = 254/336 (75%), Positives = 293/336 (87%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PP TATPEQ++++EEVTAPSVL+KRASIKGKTVREAQKTFRI+H D+F+E G YLRVH
Sbjct: 131  PQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAGMYLRVH 190

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRII VTES VVLDKPAG SVGGTTDNIEESCATF +RALG  AP
Sbjct: 191  VHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAP 250

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR +E CSVFHGKIREK VKKLY+AL  +PV IGV+ HYMRPI
Sbjct: 251  LRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVNHYMRPI 310

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SE+F+ GWHLCQLEV++CK+VPWP   +++K+ +++CGWP +D AYEC INLL
Sbjct: 311  NMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYECKINLL 370

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA GAP+VGDSMYMPAA+A+MV+PG NP+ K  KQYTSE +    VEEW
Sbjct: 371  TGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDDKAIAVEEW 430

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            +  HGKEP+VAIGLQA QISWDDG+H Y AG PWW+
Sbjct: 431  VLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 487

 Score =  547 bits (1410), Expect = e-153
 Identities = 256/336 (76%), Positives = 290/336 (86%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPP TATPEQM++++EVT PSVL KR+SIKGKTVREAQKTFRI+H D+ VE GTYLRVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCY+IDW SRIIAVTESHVVLDKPAG SVGGTTDNIEESCATF SRALG   P
Sbjct: 203  VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR +EYCS+FH KIREKKVKKLYLALT AP+ +G++THYMRPI
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+APRL+SEDF+ GW+LCQLEV++CKKVPWP   V K + IE+CGWP +D+AYEC I LL
Sbjct: 323  NIAPRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 382

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQ+RAQLAA GAPIVGDSMYMPAAIAQ+ +PG+NP+ K  K+Y S+ +    V EW
Sbjct: 383  TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 442

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            I+QHG EPSVAIGLQA  ISWDDGE  YEA  PWW+
Sbjct: 443  ISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 395

 Score =  543 bits (1398), Expect = e-152
 Identities = 248/336 (73%), Positives = 290/336 (86%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            P+PPPTATPEQ++++EE TAPSVL+KRASIKGKTVREAQKTFR+S   +F+E GTYLRV+
Sbjct: 60   PQPPPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVY 119

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHP+RFPRCYEIDW SRIIAVTES+VVLDKPAG SVGGTT+NIEE+CATF +RALG   P
Sbjct: 120  VHPRRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIP 179

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVVLAR  EYC VFHGKIRE KVKKLYLAL   PV +GVITHYMRP 
Sbjct: 180  LKTTHQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPG 239

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            N+ PRL+SE+F++GW+LCQLEVL+C+KVPWP    ++K+ +E+CGWP +DFAYEC INLL
Sbjct: 240  NIPPRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLL 299

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQKVEEW 901
            TGRTHQIRAQLAA GAP+VGDSMYMPAAIA+M NPGVNP+ K  KQYT E++    V EW
Sbjct: 300  TGRTHQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEW 359

Query: 902  IAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            + +HGKEPS+AIGLQA +ISW D +H Y+AG PWW+
Sbjct: 360  VERHGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395


>ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Capsella rubella]
            gi|482553612|gb|EOA17805.1| hypothetical protein
            CARUB_v10006203mg [Capsella rubella]
          Length = 479

 Score =  541 bits (1393), Expect = e-151
 Identities = 253/339 (74%), Positives = 289/339 (85%), Gaps = 3/339 (0%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTATPE++K++EEVT+PSVL+KR+SIKGKTVREAQKTFR++H D++ E GTYLRVH
Sbjct: 141  PKPPPTATPEEIKLFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTDQYAEAGTYLRVH 200

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKR PRCYEIDW SRIIAVT+S+V+LDKPAG +VGGTTDNIEESCATF SRAL    P
Sbjct: 201  VHPKRSPRCYEIDWKSRIIAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEP 260

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVV AR KEYCSVFH KIR+K+VKKLY AL  AP+  G+I+HYMRP 
Sbjct: 261  LKTTHQIDNCTEGCVVFARTKEYCSVFHMKIRDKEVKKLYRALAAAPLPTGIISHYMRPK 320

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SED + GWHLCQLEVL+CKK+PWP    +KK DIE+CGW  ++FAYECTINLL
Sbjct: 321  NMAPRLVSEDSIKGWHLCQLEVLECKKIPWPNAGTEKKHDIEDCGWTSKEFAYECTINLL 380

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQ-KVEE 898
            TG+THQIRAQLAA GAP+VGDSMYMPAAIA+M+NP +NPY K  K YT E N  +  V E
Sbjct: 381  TGKTHQIRAQLAAYGAPLVGDSMYMPAAIAEMMNPEINPYGKAKKHYTMEENDKETAVAE 440

Query: 899  WIAQHGKEPSVAIGLQARQISW--DDGEHFYEAGRPWWQ 1009
            WI +HGKEP V IGLQA QISW  DDGEHFYEAG PWW+
Sbjct: 441  WIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 479


>ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
            gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA
            pseudouridine synthase 6, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 6; AltName:
            Full=RNA-uridine isomerase 6; Flags: Precursor
            gi|4455285|emb|CAB36821.1| hypothetical protein
            [Arabidopsis thaliana] gi|7268974|emb|CAB81284.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis
            thaliana] gi|110741616|dbj|BAE98756.1| hypothetical
            protein [Arabidopsis thaliana]
            gi|332659101|gb|AEE84501.1| RNA pseudourine synthase 6
            [Arabidopsis thaliana]
          Length = 472

 Score =  534 bits (1376), Expect = e-149
 Identities = 250/339 (73%), Positives = 286/339 (84%), Gaps = 3/339 (0%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTATPE++ ++EEVT+PSVL+KR+SIKGKTVREAQKTFR++H +++ E GTYLRVH
Sbjct: 134  PKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVH 193

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKR PRCYEIDW SRI+AVT+S+V+LDKPAG +VGGTTDNIEESCATF SRAL    P
Sbjct: 194  VHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEP 253

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVV AR KEYCSVFH KIR K+VKKLY AL  AP+ IG+I+HYMRP 
Sbjct: 254  LKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPK 313

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL++ED + GWHLCQLEVL+CKK+PWP    +KK DIE+CGW  ++FAYECTINLL
Sbjct: 314  NMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLL 373

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESNTGQ-KVEE 898
            TG+THQIRAQLAA GAP+VGDSMYMPAAIA+M NP  NPY K  K YT E N  +  V E
Sbjct: 374  TGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAE 433

Query: 899  WIAQHGKEPSVAIGLQARQISW--DDGEHFYEAGRPWWQ 1009
            WI +HGKEP V IGLQA QISW  DDGEHFYEAG PWW+
Sbjct: 434  WIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472


>ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cicer arietinum]
          Length = 467

 Score =  533 bits (1374), Expect = e-149
 Identities = 250/348 (71%), Positives = 286/348 (82%), Gaps = 12/348 (3%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTAT E+++++++ T P VLRKRASIKGKT+REAQKTF ++  D+FVEPGTYLRVH
Sbjct: 119  PKPPPTATAEEIRVFKKATEPLVLRKRASIKGKTIREAQKTFLVTDVDQFVEPGTYLRVH 178

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKRFPRCYEIDW SRIIAV ES+V+LDKPAG SVGGTT N EESCA F +RAL    P
Sbjct: 179  VHPKRFPRCYEIDWRSRIIAVEESYVILDKPAGTSVGGTTGNTEESCANFATRALELTTP 238

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L+TTHQIDNCTEGCVVLAR KEYCSVFHGKIREKKVKK+YLAL  +P+  G+I HYMRPI
Sbjct: 239  LMTTHQIDNCTEGCVVLARNKEYCSVFHGKIREKKVKKIYLALAASPLPTGIIKHYMRPI 298

Query: 542  NMAPRLLSED------------FVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPP 685
            NMAPRL+SE             F  GWH+CQLEVL+C K+PWPT  VQ+K+ +E+CGWP 
Sbjct: 299  NMAPRLISEGXTTQIGMHSKDYFNKGWHICQLEVLECIKIPWPTTVVQEKYCVEDCGWPS 358

Query: 686  QDFAYECTINLLTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYT 865
            QD+AYEC INLLTGRTHQIRAQ AA  AP++GDSMYMPAAIA+M+NPG+NP+ K  K +T
Sbjct: 359  QDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMMNPGLNPFGKYKKDFT 418

Query: 866  SESNTGQKVEEWIAQHGKEPSVAIGLQARQISWDDGEHFYEAGRPWWQ 1009
            SES     V  WIAQHGKEPSVAIGLQA QISWDDGEH YEAG PWW+
Sbjct: 419  SESEKETAVINWIAQHGKEPSVAIGLQACQISWDDGEHIYEAGSPWWR 466


>ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297313664|gb|EFH44087.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 476

 Score =  533 bits (1374), Expect = e-149
 Identities = 251/339 (74%), Positives = 284/339 (83%), Gaps = 3/339 (0%)
 Frame = +2

Query: 2    PKPPPTATPEQMKIYEEVTAPSVLRKRASIKGKTVREAQKTFRISHPDEFVEPGTYLRVH 181
            PKPPPTATPEQ++++EEVT PSVL+KR+SIKGKTVREAQKTFR++H +++ E GTYLRVH
Sbjct: 138  PKPPPTATPEQIELFEEVTCPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVH 197

Query: 182  VHPKRFPRCYEIDWASRIIAVTESHVVLDKPAGISVGGTTDNIEESCATFTSRALGFEAP 361
            VHPKR PRCYEIDW SRI+AVT+S+V+LDKPAG +VGGTTDNIEESCATF SRAL    P
Sbjct: 198  VHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEP 257

Query: 362  LLTTHQIDNCTEGCVVLARFKEYCSVFHGKIREKKVKKLYLALTVAPVQIGVITHYMRPI 541
            L TTHQIDNCTEGCVV AR KEYCSVFH KIR K+VKKLY AL  AP+  G+I+HYMRP 
Sbjct: 258  LKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPTGIISHYMRPK 317

Query: 542  NMAPRLLSEDFVDGWHLCQLEVLDCKKVPWPTVPVQKKFDIENCGWPPQDFAYECTINLL 721
            NMAPRL+SED + GWHLCQLEVL+CKK+PWP    +KK DIE+CGW  ++FAYECTINLL
Sbjct: 318  NMAPRLVSEDSIKGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLL 377

Query: 722  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPYKKKNKQYTSESN-TGQKVEE 898
            TG+THQIRAQLAA GAP+VGDSMYMPAAIA+MVNP  N Y K  K YT E N     V E
Sbjct: 378  TGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMVNPDTNLYGKAKKHYTMEENDKDTAVAE 437

Query: 899  WIAQHGKEPSVAIGLQARQISW--DDGEHFYEAGRPWWQ 1009
            WI +HGKEP V IGLQA QISW  DDGEHFYEAG PWW+
Sbjct: 438  WIDRHGKEPRVGIGLQACQISWYDDDGEHFYEAGTPWWR 476