BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00012656
         (855 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352116.1| PREDICTED: DNA-directed RNA polymerase V sub...   204   4e-50
ref|XP_004247645.1| PREDICTED: DNA-directed RNA polymerase II su...   199   1e-48
ref|XP_002314653.1| hypothetical protein POPTR_0010s08780g [Popu...   163   8e-38
gb|EMJ24730.1| hypothetical protein PRUPE_ppa012042mg [Prunus pe...   157   6e-36
gb|EOY05898.1| RNA polymerase Rpb7-like, N-terminal domain, puta...   155   2e-35
gb|EOY05895.1| DNA-directed RNA polymerase II subunit RPB7, puta...   155   2e-35
gb|EXB38410.1| DNA-directed RNA polymerase II subunit [Morus not...   154   5e-35
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              152   1e-34
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   150   4e-34
ref|XP_006489790.1| PREDICTED: DNA-directed RNA polymerase V sub...   147   4e-33
ref|XP_006420614.1| hypothetical protein CICLE_v10006012mg [Citr...   147   5e-33
ref|XP_006358119.1| PREDICTED: DNA-directed RNA polymerase V sub...   147   6e-33
ref|XP_006365562.1| PREDICTED: DNA-directed RNA polymerase V sub...   144   5e-32
ref|XP_006341489.1| PREDICTED: DNA-directed RNA polymerase V sub...   143   7e-32
ref|XP_004288440.1| PREDICTED: DNA-directed RNA polymerase II su...   143   7e-32
ref|XP_004235838.1| PREDICTED: DNA-directed RNA polymerase II su...   143   7e-32
ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   143   7e-32
ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II su...   143   7e-32
ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   142   1e-31
ref|XP_002312568.1| RNA polymerase Rpb7 N-terminal domain-contai...   141   3e-31

>ref|XP_006352116.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Solanum
           tuberosum]
          Length = 186

 Score =  204 bits (518), Expect = 4e-50
 Identities = 102/185 (55%), Positives = 130/185 (70%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           MLCD E   +V++P++ ++K   +   +V  RL  QL+ + ATE+CGYFL VTK+KS+G 
Sbjct: 1   MLCDFEVRLYVVVPMEDIKKSGELPGSIVIRRLFSQLTFLRATEDCGYFLKVTKVKSVGS 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  +SS  I+FPVTF  RT +PK GE++ G V  V + GVFLKCGPMN IYLS +KMPN
Sbjct: 61  GKLLDSSKYIMFPVTFHSRTFLPKTGEVLVGIVIEVCRHGVFLKCGPMNSIYLSVRKMPN 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAG 552
           Y YV  ENPFF+ ND SRIE    V F V+A+RW     R+F +LASI+GDSLGPVSL G
Sbjct: 121 YNYVSGENPFFICNDQSRIENEVAVRFVVYAMRWSRTLVRKFDVLASIDGDSLGPVSLNG 180

Query: 553 TDVIE 567
            D +E
Sbjct: 181 FDGLE 185


>ref|XP_004247645.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Solanum lycopersicum]
          Length = 186

 Score =  199 bits (505), Expect = 1e-48
 Identities = 100/185 (54%), Positives = 128/185 (69%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           MLCD E   +V++P++ ++K   +   ++  RL  QL+ + ATE+CGYFL VTK+KS+G 
Sbjct: 1   MLCDFEVRLYVVVPMEDIKKSGELPGNIIIRRLFSQLTFLRATEDCGYFLKVTKVKSVGN 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  +SS  I+FPVTF   T +PK GE++ G V  V + GVFLKCGPMN IYLS +KMPN
Sbjct: 61  GKLLDSSKYIMFPVTFHSLTFLPKIGEVLVGIVVEVCRHGVFLKCGPMNSIYLSVRKMPN 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAG 552
           Y YV  ENPFF+ ND SRIE    V F V+A+RW     R+F +LASIEGD LGPVSL G
Sbjct: 121 YNYVPGENPFFICNDQSRIENEVAVRFVVYAMRWSRTLVRKFDVLASIEGDCLGPVSLNG 180

Query: 553 TDVIE 567
            D +E
Sbjct: 181 FDGLE 185


>ref|XP_002314653.1| hypothetical protein POPTR_0010s08780g [Populus trichocarpa]
           gi|222863693|gb|EEF00824.1| hypothetical protein
           POPTR_0010s08780g [Populus trichocarpa]
          Length = 189

 Score =  163 bits (412), Expect = 8e-38
 Identities = 86/188 (45%), Positives = 122/188 (64%), Gaps = 3/188 (1%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M  + E    V I  + +++   V +  + T LL  L ++ A+++ GYFLAVT LKSIG+
Sbjct: 1   MFGEVEVCSTVRIIAENLDRNGLVPQRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIGK 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           G+    S  ++F V F CRT +P  GEI+ G VH   + GV L+CGP+  I+LS++KMPN
Sbjct: 61  GEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVLLRCGPVKYIFLSARKMPN 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKE---DKYRQFKILASIEGDSLGPVS 543
           YQY   ENP FL+++++RIE N +V FSV  VRW E   D  R F +LAS+ GDSLGP+S
Sbjct: 121 YQYTSEENPVFLNDELARIENNVLVRFSVLDVRWIEKMWDMRRDFMMLASLVGDSLGPIS 180

Query: 544 LAGTDVIE 567
           L G+D ++
Sbjct: 181 LCGSDELD 188


>gb|EMJ24730.1| hypothetical protein PRUPE_ppa012042mg [Prunus persica]
          Length = 186

 Score =  157 bits (396), Expect = 6e-36
 Identities = 80/179 (44%), Positives = 117/179 (65%), Gaps = 2/179 (1%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M  + E    V +  + +++   V    + TRLL  L +  A E+ GYFLAVT +K IG+
Sbjct: 1   MFYEVELLREVAVLAENLDRDKLVSSRFIVTRLLEGLLSEKADEDLGYFLAVTGIKRIGK 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           G+   +S  + FPV F CR  +P+ GEI+ G V  V + GVFL+CGP+  ++LS++KMPN
Sbjct: 61  GEVVHNSGDVFFPVVFNCRMFLPRKGEILEGVVDHVHRLGVFLRCGPVKYVFLSARKMPN 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRW--KEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  E P FL +D++RIEK+ VV F VF VRW  +ED  ++F +LA+++GD LGPV+
Sbjct: 121 YRYVVGEKPVFLHDDLARIEKDVVVRFEVFGVRWMRREDITKEFMMLATLQGDLLGPVT 179


>gb|EOY05898.1| RNA polymerase Rpb7-like, N-terminal domain, putative isoform 4
           [Theobroma cacao] gi|508714002|gb|EOY05899.1| RNA
           polymerase Rpb7-like, N-terminal domain, putative
           isoform 4 [Theobroma cacao]
          Length = 185

 Score =  155 bits (392), Expect = 2e-35
 Identities = 82/165 (49%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
 Frame = +1

Query: 88  KGLVATR-----LLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTCIIFPVTFCCRT 252
           +GLV+ R     LL  L    A+E+ GYFL+VT LKSIG+G   + S  ++F V F CRT
Sbjct: 21  RGLVSQRSILVLLLEDLFKERASEDHGYFLSVTSLKSIGKGDVVDESGNMVFTVVFTCRT 80

Query: 253 LIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENPFFLSNDMSRIE 432
             P  GE++ G VH +  RGVFL+CGP+   YLS+ KMPNY YV    P F+S+D+S+IE
Sbjct: 81  FKPFKGEVLQGVVHHICHRGVFLRCGPVRIAYLSAWKMPNYHYVPGAKPVFISDDLSKIE 140

Query: 433 KNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 567
           K+ VVCF V AVRW     R F++LAS+  DSLGP+SL  +D ++
Sbjct: 141 KDVVVCFLVLAVRWISAS-RDFELLASLNADSLGPISLPWSDEVD 184


>gb|EOY05895.1| DNA-directed RNA polymerase II subunit RPB7, putative isoform 1
           [Theobroma cacao] gi|508713999|gb|EOY05896.1|
           DNA-directed RNA polymerase II subunit RPB7, putative
           isoform 1 [Theobroma cacao] gi|508714000|gb|EOY05897.1|
           DNA-directed RNA polymerase II subunit RPB7, putative
           isoform 1 [Theobroma cacao]
          Length = 190

 Score =  155 bits (392), Expect = 2e-35
 Identities = 82/165 (49%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
 Frame = +1

Query: 88  KGLVATR-----LLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTCIIFPVTFCCRT 252
           +GLV+ R     LL  L    A+E+ GYFL+VT LKSIG+G   + S  ++F V F CRT
Sbjct: 26  RGLVSQRSILVLLLEDLFKERASEDHGYFLSVTSLKSIGKGDVVDESGNMVFTVVFTCRT 85

Query: 253 LIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENPFFLSNDMSRIE 432
             P  GE++ G VH +  RGVFL+CGP+   YLS+ KMPNY YV    P F+S+D+S+IE
Sbjct: 86  FKPFKGEVLQGVVHHICHRGVFLRCGPVRIAYLSAWKMPNYHYVPGAKPVFISDDLSKIE 145

Query: 433 KNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 567
           K+ VVCF V AVRW     R F++LAS+  DSLGP+SL  +D ++
Sbjct: 146 KDVVVCFLVLAVRWISAS-RDFELLASLNADSLGPISLPWSDEVD 189


>gb|EXB38410.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 202

 Score =  154 bits (388), Expect = 5e-35
 Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 14/174 (8%)
 Frame = +1

Query: 88  KGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTCIIFPVTFCCRTLIPKN 267
           +  + TRLL  L    A+++ GYFLAVT LK IG+ K  E S  + FPV F CRT +P  
Sbjct: 28  QSFIMTRLLEDLVREKASKDHGYFLAVTSLKKIGKMKAVEESGDVFFPVVFNCRTFLPYE 87

Query: 268 GEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYV-----------ETENPFFLSN 414
           GEI+ G VH + + GVFL+CGP+   YLS++KMP YQYV               P F+SN
Sbjct: 88  GEILQGIVHCIYRHGVFLRCGPIKYAYLSARKMPGYQYVYGQKMACQKCGHDRKPLFVSN 147

Query: 415 DMSRIEKNGVVCFSVFAVRWKE---DKYRQFKILASIEGDSLGPVSLAGTDVIE 567
           + ++IE   VVCF V  VRW E   +   +F +LA++EGDSLGP+SL+G+  ++
Sbjct: 148 EFAKIENGVVVCFMVLGVRWFENWGNVKNEFGVLATLEGDSLGPISLSGSGELD 201


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  152 bits (384), Expect = 1e-34
 Identities = 83/180 (46%), Positives = 112/180 (62%)
 Frame = +1

Query: 4   KLNMLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKS 183
           K  M    +   +VIIP + ++    +L+  +  RLL   S   AT+  GYFLAVT L++
Sbjct: 63  KTEMFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLEN 122

Query: 184 IGRGKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQK 363
           IG GK  + S  ++FPV F C T     GEI+ G VH V K GV L+CGP+  IYLS QK
Sbjct: 123 IGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQK 182

Query: 364 MPNYQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           MP+Y+YV  ENP FL+  +S+IEK+ VV F V   +W E + R+F+ L S+EGD LGP+S
Sbjct: 183 MPDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAE-REFQALVSLEGDYLGPLS 241


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  150 bits (380), Expect = 4e-34
 Identities = 82/177 (46%), Positives = 111/177 (62%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M    +   +VIIP + ++    +L+  +  RLL   S   AT+  GYFLAVT L++IG 
Sbjct: 1   MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  + S  ++FPV F C T     GEI+ G VH V K GV L+CGP+  IYLS QKMP+
Sbjct: 61  GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP FL+  +S+IEK+ VV F V   +W E + R+F+ L S+EGD LGP+S
Sbjct: 121 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAE-REFQALVSLEGDYLGPLS 176


>ref|XP_006489790.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Citrus
           sinensis]
          Length = 182

 Score =  147 bits (372), Expect = 4e-33
 Identities = 77/168 (45%), Positives = 110/168 (65%)
 Frame = +1

Query: 40  HVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTC 219
           +V++P + ++   P+L+  +  RLL   +   AT++ GYFLAVT L++IG G+  E++  
Sbjct: 10  NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGE 69

Query: 220 IIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENP 399
           ++FPV F   T     GE++ GTVH V K GVFLKCGP+  IYL+  KMP+Y+YV+ ENP
Sbjct: 70  VLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENP 129

Query: 400 FFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
            FLS    +IEK+ VV   V   +W E + R+F+ L S+EGD LGPVS
Sbjct: 130 VFLSEKNPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLGPVS 176


>ref|XP_006420614.1| hypothetical protein CICLE_v10006012mg [Citrus clementina]
           gi|557522487|gb|ESR33854.1| hypothetical protein
           CICLE_v10006012mg [Citrus clementina]
          Length = 182

 Score =  147 bits (371), Expect = 5e-33
 Identities = 77/168 (45%), Positives = 110/168 (65%)
 Frame = +1

Query: 40  HVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTC 219
           +V++P + ++   P+L+  +  RLL   +   AT++ GYFLAVT L++IG G+  E++  
Sbjct: 10  NVVVPAENLDAKGPMLQRSIVIRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGE 69

Query: 220 IIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENP 399
           ++FPV F   T     GE++ GTVH V K GVFLKCGP+  IYL+  KMP+Y+YV+ ENP
Sbjct: 70  VLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENP 129

Query: 400 FFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
            FLS    +IEK+ VV   V   +W E + R+F+ L S+EGD LGPVS
Sbjct: 130 VFLSEKNPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLGPVS 176


>ref|XP_006358119.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Solanum
           tuberosum]
          Length = 180

 Score =  147 bits (370), Expect = 6e-33
 Identities = 76/177 (42%), Positives = 115/177 (64%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M   ++ S +VIIP + ++    +L+  +  RL+   ++  A++N GYF+A+T L+ IG 
Sbjct: 1   MYVKSQLSWNVIIPAENLDVEGLMLQKAIVIRLMDDFASKKASKNLGYFMALTSLERIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  + +  ++FPV F C T     GEI+ G V  + K GVFL+CGP N++YLS QKM +
Sbjct: 61  GKVRDHTGDVLFPVEFSCLTFKLFRGEILEGVVDKILKHGVFLRCGPTNKVYLSHQKMAD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP F++  MSRIEK+ VV F VF  R+ E + ++F+ + S+EGD LGP+S
Sbjct: 121 YKYVPGENPIFMNEKMSRIEKHTVVRFIVFGARYVEAE-KEFQAVVSLEGDYLGPIS 176


>ref|XP_006365562.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Solanum
           tuberosum]
          Length = 180

 Score =  144 bits (362), Expect = 5e-32
 Identities = 76/177 (42%), Positives = 114/177 (64%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M   ++ S +VIIP + ++    +L+  +  RL+   +A  A++N GYF+A+T L+ IG 
Sbjct: 1   MYLKSQLSWNVIIPAENLDVEGLMLQKAIVIRLMDDFAAKKASKNLGYFMALTTLERIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  E +  ++FPV F C T     GEI+ G V  + K GVFL+CGP +++YLS QKM +
Sbjct: 61  GKVREHTGDVLFPVEFSCVTFKIFRGEILEGVVDKILKHGVFLRCGPTDKVYLSHQKMAD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP F++  MSRIEK+ VV F V   R+ E + ++F+ + S+EGD LGP+S
Sbjct: 121 YKYVPGENPIFMNEKMSRIEKDTVVRFIVVGARYVEAE-KEFQAVVSLEGDYLGPIS 176


>ref|XP_006341489.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Solanum
           tuberosum]
          Length = 180

 Score =  143 bits (361), Expect = 7e-32
 Identities = 76/177 (42%), Positives = 114/177 (64%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M   ++ S +VIIP + ++    +L+  +  RLL   ++  A++N GYF+A+T L+ IG 
Sbjct: 1   MYLKSQLSWNVIIPAENLDVEGLMLQKAIVIRLLDDFASKKASKNLGYFMALTTLERIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  E +  ++FPV F C T     GEI+ G V  + K GVFL+CGP +++YLS QKM +
Sbjct: 61  GKVREHTGDVLFPVEFSCITFKIFRGEILEGVVDKILKHGVFLRCGPTDKVYLSHQKMAD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP F++  MSRIEK+ VV F V   R+ E + ++F+ + S+EGD LGP+S
Sbjct: 121 YKYVPGENPIFMNEKMSRIEKDTVVRFIVVGARYVEAE-KEFQAVVSLEGDYLGPIS 176


>ref|XP_004288440.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb7-like
           [Fragaria vesca subsp. vesca]
          Length = 188

 Score =  143 bits (361), Expect = 7e-32
 Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVL-KGLVATRLLHQLSAVIATENCGYFLAVTKLKSIG 189
           M  + E    V++  + ++K  P   K ++ T+LL  L    A+++ GYFL VT LK +G
Sbjct: 1   MYSEVELVRGVVVLAEKLDKDSPFSSKSVITTQLLKDLLKEKASKDHGYFLKVTALKKVG 60

Query: 190 RGKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMP 369
            G+  + S  ++F V F CRT IP  GEI+ G V+ V   GVF++CGP+N  YLS++KMP
Sbjct: 61  TGQILDHSRKMLFHVAFSCRTFIPLQGEILEGVVYKVHNLGVFIRCGPLNYAYLSARKMP 120

Query: 370 NYQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRW---KEDKYRQFKILASIEGDSLGPV 540
           NY YV    PFFL  D+++IEK  VV F V   RW     +   +F +L S+ GDSLGPV
Sbjct: 121 NYHYVAGTKPFFLKGDLAKIEKKVVVRFRVLHARWTAKSREIRNEFVVLGSMVGDSLGPV 180


>ref|XP_004235838.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Solanum lycopersicum]
          Length = 180

 Score =  143 bits (361), Expect = 7e-32
 Identities = 76/177 (42%), Positives = 114/177 (64%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M   ++ S +VIIP + ++    +L+  +  RLL   ++  A+++ GYF+AVT L+ IG 
Sbjct: 1   MFLKSQLSWNVIIPAENLDVEGLMLQKAIVIRLLDDFASKKASKSLGYFMAVTTLERIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  E +  ++FPV F C T     GEI+ G V  + K GVFL+CGP +++YLS QKM +
Sbjct: 61  GKVREHTGDVLFPVEFSCITFKIFRGEILDGVVEKILKHGVFLRCGPTDKVYLSHQKMAD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP F++  MSRIEK+ VV F V   R+ E + ++F+ + S+EGD LGP+S
Sbjct: 121 YKYVPGENPIFMNEKMSRIEKDTVVRFIVVGARYVEAE-KEFQAVVSLEGDYLGPIS 176


>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  143 bits (361), Expect = 7e-32
 Identities = 80/177 (45%), Positives = 113/177 (63%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M    +   +VIIP + ++    +L+  +  RLL + +   AT++ GYFLAVT L++IG 
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  ++   ++FPV F   T     GEI+ G VH V K GVFL+CGP+  IYLS  KMP+
Sbjct: 61  GKVRQTGD-VLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 119

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP FL++ +S+IEK+ VV F V   +W E + R+F+ L S+EGD LGPVS
Sbjct: 120 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAE-REFQALVSLEGDYLGPVS 175


>ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449432630|ref|XP_004134102.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
           gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB7-like [Cucumis sativus]
           gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB7-like [Cucumis sativus]
          Length = 190

 Score =  143 bits (361), Expect = 7e-32
 Identities = 75/158 (47%), Positives = 105/158 (66%), Gaps = 4/158 (2%)
 Frame = +1

Query: 97  VATRLLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTCIIFPVTFCCRTLIPKNGEI 276
           + T LL  L    A ++ GYFL+VT L+SIG+G     S C+ FP+TF CRT +P  GEI
Sbjct: 29  IITCLLENLLKEKANKDHGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEI 88

Query: 277 MTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENPFFLSNDMSRIEKNGVVCFS 456
           + G V  + +RG+ LKCGP+  ++LS++KMP YQYV  ENP F S + + I  + VV FS
Sbjct: 89  LHGVVRHIFQRGLLLKCGPIKYVFLSARKMPTYQYVGGENPVFSSKEFATIGNDVVVRFS 148

Query: 457 VFAVRWKEDK---YRQFKILASIEG-DSLGPVSLAGTD 558
           V  VRW E +    ++F +LAS+EG +SLGP+SL+ +D
Sbjct: 149 VLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLSDSD 186


>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  142 bits (359), Expect = 1e-31
 Identities = 78/168 (46%), Positives = 108/168 (64%)
 Frame = +1

Query: 40  HVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGRGKPCESSTC 219
           +VII  + ++    +L+  +  RLL   ++  AT++ GY+LAVT L+SIG GK  E +  
Sbjct: 10  NVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGEGKVREHTGD 69

Query: 220 IIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPNYQYVETENP 399
           ++FPV F   T     GEI+ G VH V K GVF++CGP+  IYLS  KMP+Y YV  ENP
Sbjct: 70  VLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENP 129

Query: 400 FFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
            FL++  S+IEK+ VV F V   +W E + R+F+ L S+EGD LGPVS
Sbjct: 130 VFLNDKTSKIEKDVVVRFIVIGTKWLEAE-REFQALVSLEGDYLGPVS 176


>ref|XP_002312568.1| RNA polymerase Rpb7 N-terminal domain-containing family protein
           [Populus trichocarpa] gi|222852388|gb|EEE89935.1| RNA
           polymerase Rpb7 N-terminal domain-containing family
           protein [Populus trichocarpa]
          Length = 176

 Score =  141 bits (355), Expect = 3e-31
 Identities = 78/177 (44%), Positives = 110/177 (62%)
 Frame = +1

Query: 13  MLCDAECSCHVIIPVKFMEKGHPVLKGLVATRLLHQLSAVIATENCGYFLAVTKLKSIGR 192
           M    +   +VIIP + ++    +L+  +  RLL   +   AT++ GY+LAV+ L+SIG 
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 193 GKPCESSTCIIFPVTFCCRTLIPKNGEIMTGTVHIVQKRGVFLKCGPMNQIYLSSQKMPN 372
           GK  + +  ++FPV F   T     GEI+ G VH V K GV L+CGP+  IYLS  KMP+
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 373 YQYVETENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 543
           Y+YV  ENP FL++  S+IEK+ VV F V   +W E + R+F+ L S+EGD LGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAE-REFQALVSLEGDYLGPVS 176