BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00006429
         (2740 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           543   e-151
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        543   e-151
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   542   e-151
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   540   e-150
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   539   e-150
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   538   e-150
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   537   e-150
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     530   e-147
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     525   e-146
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     524   e-145
gb|AFB73912.1| polyprotein [Citrus sinensis]                          523   e-145
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   521   e-145
gb|AFB73911.1| polyprotein [Citrus sinensis]                          521   e-145
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  518   e-144
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              516   e-143
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              516   e-143
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              514   e-143
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   514   e-142
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             511   e-142
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              511   e-142

>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  543 bits (1400), Expect = e-151
 Identities = 265/472 (56%), Positives = 349/472 (73%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW +V  P K+K I CKWIFK KE  S +EPP++KARLVA+G+SQ+ G+D+N++FSP
Sbjct: 847  KNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSP 906

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR  L+IVA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GKE   C LK
Sbjct: 907  VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 966

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + +YLLLYVDDMLIA K
Sbjct: 967  RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAK 1025

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +IT+LK LL SEFDMKDLGSA +ILGM ISRDR    LF+SQ ++++K++ +F+M  
Sbjct: 1026 SKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN 1085

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V TP+A HF+LS   CP TD +   M+ +P   A+GS+MY+M+ +RPD++Y++SL+S
Sbjct: 1086 AKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVS 1145

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+MSNPG++HW AL+W+ RY+  T    L +        L+GYVDSD+A D D R+S T 
Sbjct: 1146 RYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTG 1203

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SW++ LQ VVALSTTEAEY+A  EA KE+IWL+GL +EL  + S   ++ 
Sbjct: 1204 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1263

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS ++L K+ ++HERTKHI++KYHF+R+ +  G + + KI T DNPAD +
Sbjct: 1264 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMM 1315


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  543 bits (1398), Expect = e-151
 Identities = 272/474 (57%), Positives = 355/474 (74%), Gaps = 2/474 (0%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            +N+TW L+  P  ++LI+CKWIFK  E     EPP++KARLVA+GF+Q EG+DFNEIFSP
Sbjct: 842  RNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSP 901

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IRI+LA+VA  DL+LEQ+DVKTAFLHG LEE I M QP GFE K KE+  CLL 
Sbjct: 902  VVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLH 961

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            KSLYGLKQSPRQWY+RFD FM+  G+ +S YDSC+YF G +     YLLLYVDDMLIA K
Sbjct: 962  KSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASK 1021

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
            ++ +I RLK+LLK+EF+MKDLG+A RILGM+I RDR+  +LF+SQ  +++K++ +F M  
Sbjct: 1022 YKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQD 1081

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
            CKPV TPL   F+LS  +   T + ++ M   P   A+GS+MY+M+ TR DIAY++S++S
Sbjct: 1082 CKPVQTPLGPQFKLSAAT---TSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVS 1138

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLY-HNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            R++S PG+ HW A+KW++RY+  +   GLLY    SD  E++G+VDSDFAGD D RKST+
Sbjct: 1139 RYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTS 1198

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAV-I 1484
             Y F L    ISWKS LQ   ALS+TEAE+IA+TEA+KE +WL+GLL+EL  LN K V +
Sbjct: 1199 RYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELW-LNQKIVQV 1257

Query: 1483 YTDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            + D+Q+ +HL KN +YHERTKHI+VK  FIR++V  G V + KI T  NPAD L
Sbjct: 1258 FCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADAL 1311


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  542 bits (1397), Expect = e-151
 Identities = 264/472 (55%), Positives = 350/472 (74%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ+ G+D+N++FSP
Sbjct: 845  KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR  L+IVA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GKE   C LK
Sbjct: 905  VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + +YLLLYVDDMLIA K
Sbjct: 965  RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAK 1023

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +IT+LK LL SEFDMKDLGSA +ILGM ISRDR    LF+SQ ++++K++ +F+M  
Sbjct: 1024 SKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN 1083

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V TP+A HF+LS   CP  D +   M+ +P   A+GS+MY+M+ +RPD++Y++SL+S
Sbjct: 1084 AKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVS 1143

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+MSNPG++HW A++W+ RY+  T    L +        L+GYVDSD+A D D R+S T 
Sbjct: 1144 RYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTG 1201

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SW++ LQ VVALSTTEAEY+A  EA KE+IWL+GL +EL  + S   ++ 
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1261

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS ++L K+ ++HERTKHI++KYHF+R+ +  G + + KIST DNPAD +
Sbjct: 1262 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMM 1313


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  540 bits (1390), Expect = e-150
 Identities = 263/472 (55%), Positives = 349/472 (73%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ+ G+D+N++FSP
Sbjct: 845  KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR  L+IVA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GKE   C LK
Sbjct: 905  VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + +YLLLYVDDMLIA K
Sbjct: 965  RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAK 1023

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +IT+LK LL SEFDMKDLGSA +IL M ISRDR    LF+SQ ++++K++ +F+M  
Sbjct: 1024 SKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN 1083

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V TP+A HF+LS   CP TD +   M+ +P   A+GS+MY+M+ +RPD++Y++SL+S
Sbjct: 1084 AKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVS 1143

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+MSNPG++HW  ++W+ RY+  T    L +        L+GYVDSD+A D D R+S T 
Sbjct: 1144 RYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTG 1201

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SW++ LQ VVALSTTEAEY+A  EA KE+IWL+GL +EL  + S   ++ 
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1261

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS ++L K+ ++HERTKHI++KYHF+R+ +  G + + KIST DNPAD +
Sbjct: 1262 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMM 1313


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  539 bits (1389), Expect = e-150
 Identities = 263/472 (55%), Positives = 349/472 (73%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW LV  P ++K + CKWIFK KE  S +EPPRFK RLVAKGFSQ+ G+D+N++FSP
Sbjct: 834  KNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSP 893

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR   +IV  +DL+LEQLDVKT FLHGELEE IYM QP GF   GKE+  C LK
Sbjct: 894  VVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLK 953

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +SLYGLKQSPRQWYKRFDSFML  GF +S +DSC+Y    N  + +YLLLYVDDMLIA K
Sbjct: 954  RSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAK 1012

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             +++IT LK  L SEFDMKDLG+A +ILGM I+RDR    LF+SQ+S+++K++ +F+MH 
Sbjct: 1013 SKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHD 1072

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             KPV TP+A HF+LS   C  TD+    M+ +P   A+GS+MY+M+ + PD+++++SL+S
Sbjct: 1073 AKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVS 1132

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+M+NPG++HW A++W+ RY+  T D  L +        LVGYVDSDFA D D R+S T 
Sbjct: 1133 RYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDKG--LVGYVDSDFAADLDKRRSLTG 1190

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SWK+ LQPVVA STTEAEY+A  EA KE +WL+GL +EL  ++S   ++ 
Sbjct: 1191 YVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFC 1250

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS + L K+ ++HERTKHI++KYH++R+ V+ G + + KIS  DNPAD +
Sbjct: 1251 DSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMM 1302


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  538 bits (1386), Expect = e-150
 Identities = 260/471 (55%), Positives = 356/471 (75%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            HKN+TW LV +PS +K+I CKW+FK KE  S  E  ++KAR+VA+GF+Q EG+D+NEIFS
Sbjct: 818  HKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFS 877

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV++ +IR++LAIVA  +L+LEQLDVKTAFLHGELEE IYM QP GF+  GKEN  C L
Sbjct: 878  PVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKL 937

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
            KKSLYGLKQSPRQWYKRFDS+M+K G+ +S+YD C+Y+   N ++ +YL+LYVDDMLIA 
Sbjct: 938  KKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAA 997

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
            K +  I +LK LL +EF+MKDLG+A +ILGM I RDR  R LF+SQ+S++QK++++F M 
Sbjct: 998  KKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMS 1057

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
              KP+ TP A++  L+    P+++++K  M+ +P   A+GS+MY+M+ TRPD+A+++S++
Sbjct: 1058 SSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVV 1117

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SRFM  PGR+HW A+K + RY+  T D GL+Y        + GY DSD+AGD D R+S T
Sbjct: 1118 SRFMGQPGREHWQAVKRIFRYLRGTSDVGLIY-GGDTQCLVTGYSDSDYAGDVDTRRSMT 1176

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTL  + +SWK+ LQP V LSTTEAEY+A TEA KE IWL+GL+S+L + + +A +Y
Sbjct: 1177 GYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVY 1236

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPAD 1328
             DS S + L K+ ++HERTKHI+V+YHF+R   S   + ++K+ T DNPAD
Sbjct: 1237 CDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPAD 1284


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  537 bits (1384), Expect = e-150
 Identities = 264/472 (55%), Positives = 352/472 (74%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW LV+ P ++K I CKWIFK KE  S+++  R+KARL+AKG+SQ+ GIDFN++FSP
Sbjct: 1051 KNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSP 1110

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR +L+IVA +D +LEQ+DVKTAFLHGELEE IYM QP GF   GKEN+ C LK
Sbjct: 1111 VVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLK 1170

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            KSLYGLKQSPRQWYKRFDSFML   F +SNYDSC+Y    +  +A+YLLLYVDDMLIA K
Sbjct: 1171 KSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAK 1229

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +I +LK+ L SEF+MKDLG+A +ILGM I+R R    L++SQK +++K++ +F+MH 
Sbjct: 1230 DKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHD 1289

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             KPV TPLA+HF+LS   CP++D     M+ +P   A+GS+MY+M+ +RPD+++++S++S
Sbjct: 1290 AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVS 1349

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+M+NPG++HW A++W+ RY+  T    L +    D   LVGYVDSDFAGD D  +S   
Sbjct: 1350 RYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDG--LVGYVDSDFAGDLDRGRSLAG 1407

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SWK+ LQ  VALSTTEAEY+A +EA KE IWL+GL + L  + S   I+ 
Sbjct: 1408 YVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFC 1467

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS + L K+ ++HERTKHI+V+YHFIR  ++ G V I KIS  DNPAD +
Sbjct: 1468 DSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMM 1519


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  530 bits (1365), Expect = e-147
 Identities = 262/472 (55%), Positives = 352/472 (74%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN +W L + P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ+ GIDFN++FSP
Sbjct: 753  KNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSP 812

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR +L+IVA +D +LEQ+DVKTAFLHGELEE IYM QP GF   GKEN+ C LK
Sbjct: 813  VVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLK 872

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            KSLYGLKQSPRQWYKRFDSFML   F +SNYDSC+Y    +  +A+YLLLYVDDMLIA K
Sbjct: 873  KSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAK 931

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +I +LK+ L SEF+MKDLG+A +ILGM I+R+R    L++SQK +++K++ +F+MH 
Sbjct: 932  DKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHD 991

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V T LA+HF+LS   CP++      M+ +P   A+ S+MY+M+ +RPD+++++S++S
Sbjct: 992  AKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVS 1051

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+M+NPG++HW A++W+ RY+  T    L +   SD   LVGYVDSDFAGD D R+S T 
Sbjct: 1052 RYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDG--LVGYVDSDFAGDLDRRRSLTG 1109

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SWK+ LQ  VALSTTEAEY+A +EA KEVIWL+GL +EL  + S   I+ 
Sbjct: 1110 YVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFC 1169

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS + L K+ ++HERTKHI+++YHFIR  ++ G V + KIST DNP D +
Sbjct: 1170 DSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMM 1221


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  525 bits (1352), Expect = e-146
 Identities = 257/472 (54%), Positives = 349/472 (73%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW LV+ P ++K I CKWIFK K+  S ++  R+KARLVAKG+SQ+ GIDFN++FSP
Sbjct: 723  KNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSP 782

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            V+K+ +IR +L+IVA +D +LEQ+DVKTAFLHGELEE IYM QP GF   GKEN+   LK
Sbjct: 783  VLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLK 842

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            KSLYGLKQSPRQWYKRFDSFM    F +SNYDSC+Y    +  +++YLLLYVDDMLIA K
Sbjct: 843  KSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVD-GSSIYLLLYVDDMLIAAK 901

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +I +LK+ L SEF+MKDLG+A +ILGM I+R+R    L++SQK +++K++ +F+MH 
Sbjct: 902  DKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHD 961

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             KPV TPLA+HF+LS   CP++D     M+ +P    +GS+MY+M+ +R D+++++S++S
Sbjct: 962  AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVS 1021

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+M+NPG++HW  ++W+ +Y+  T    L +    D   LVGYVDSDFAGD D R+S T 
Sbjct: 1022 RYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRSRDG--LVGYVDSDFAGDLDRRRSLTG 1079

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SWK+ LQ  VALSTTE EY+A +EA KE IWL+GL +EL  + S   I+ 
Sbjct: 1080 YVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFC 1139

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS +   K+ ++HERTKHI+V+YHFIR  ++ G V + KIST DNPAD +
Sbjct: 1140 DSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMM 1191


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  524 bits (1349), Expect = e-145
 Identities = 250/473 (52%), Positives = 339/473 (71%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            HKN  W LV KP ++KL+ CKW+F+ KE    ++   +KARLVAKG+SQ EG+D++EIFS
Sbjct: 809  HKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFS 868

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVVK+ +IR++L+I A YD+++EQ+DVKTAFLHG+LEE IYM QP GF E GKEN+ C L
Sbjct: 869  PVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRL 928

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
            KKSLYGLKQSPRQWYK FD++MLK G+ +  YD C+Y+        + LLLYVDDMLIAC
Sbjct: 929  KKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIAC 988

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
            +   +I +LK  L +EFDMKDLG+A +ILG+ I RDR    +++SQ+ ++ KI+ +F+M 
Sbjct: 989  RDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMA 1048

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
              K V  PLA+HF+LS +  P   K+ + M N+P   A+G +MY+MI TRPD+A ++S++
Sbjct: 1049 EAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVV 1108

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            S++MSNPG+ HW A+KW+ +Y+  T   G+++        + G+VDSDFAGD D R+ST 
Sbjct: 1109 SKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRRSTA 1168

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FT     +SWK+ LQ V ALSTTEAEY+A TEA KE IWL GL  +L V     V+ 
Sbjct: 1169 GYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVK 1228

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS +HL KN ++H RTKHI+ +YH IR+ V +G++ +EK+ T DN ADFL
Sbjct: 1229 CDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFL 1281


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  523 bits (1347), Expect = e-145
 Identities = 260/473 (54%), Positives = 342/473 (72%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            HKNKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 819  HKNKTWELVPLPHGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 877

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  T+RI+LA+ A +DL LEQLDVKTAFLHGELEE IYM QP GF E GKEN+ C L
Sbjct: 878  PVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRL 937

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+        + LLLYVDDML+A 
Sbjct: 938  NKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAG 997

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D+I  LK+ L  EF+MKDLG A++ILGM I RDR +R +++SQK++L+KI+ +F+M 
Sbjct: 998  PNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILRRFNMQ 1057

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CK + TPL  +F+LS   CP  + ++ +M+ +P   A+GS+M++MI TRPDIA ++  +
Sbjct: 1058 DCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAV 1117

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SR+M+NPG +HW A+K +LRYI  T +  L Y      F + GYVDSDFAGD D RKSTT
Sbjct: 1118 SRYMANPGGEHWIAVKRILRYIRGTSNVALCY--GGSEFTVRGYVDSDFAGDLDKRKSTT 1175

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A KE IW+Q LL EL     K  ++
Sbjct: 1176 GYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVF 1235

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI TK+N AD L
Sbjct: 1236 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVL 1288


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  521 bits (1343), Expect = e-145
 Identities = 253/452 (55%), Positives = 337/452 (74%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ+ G+D+N++FSP
Sbjct: 845  KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR  L+IVA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GKE   C LK
Sbjct: 905  VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + +YLLLYVDDMLIA K
Sbjct: 965  RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAK 1023

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             + +IT+LK LL SEFDMKDLGSA +ILGM ISRDR    LF+SQ ++++K++ +F+M  
Sbjct: 1024 SKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN 1083

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V TP+A HF+LS   CP  D +   M+ +P   A+GS+MY+M+ +RPD++Y++SL+S
Sbjct: 1084 AKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVS 1143

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+MSNPG++HW A++W+ RY+  T    L +        L+GYVDSD+A D D R+S T 
Sbjct: 1144 RYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTG 1201

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT+    +SW++ LQ VVALSTTEAEY+A  EA KE+IWL+GL +EL  + S   ++ 
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1261

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKV 1382
            DS+S ++L K+ ++HERTKHI++KYHF+R+ +
Sbjct: 1262 DSESAIYLTKDQMFHERTKHIDIKYHFVRDVI 1293


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  521 bits (1341), Expect = e-145
 Identities = 258/473 (54%), Positives = 342/473 (72%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            HKNKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 819  HKNKTWELVPLPRGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 877

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  T+RI+LA+ A +DL LEQLDVKTAFLHGELEE IYM QP GF E GKEN+ C L
Sbjct: 878  PVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRL 937

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+        + LLLYVDDML+A 
Sbjct: 938  NKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAG 997

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D+I  LK+ L  EF+MKDLG A++ILGM I RDR +  +++SQK++L+KI+ +F+M 
Sbjct: 998  PNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQ 1057

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CK + T L  +F+LS   CP  + ++ +M+ +P   A+GS+M++MI TRPDIA ++ ++
Sbjct: 1058 DCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVV 1117

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SR+M+NPG +HW A+K +LRYI  T D  L Y      F + GYVDSDFAGD D RKSTT
Sbjct: 1118 SRYMANPGGEHWIAVKRILRYIRGTSDVALCY--GGSEFTVRGYVDSDFAGDLDKRKSTT 1175

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A K+ IW+Q LL EL     K +++
Sbjct: 1176 GYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVF 1235

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI TK+N AD L
Sbjct: 1236 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVL 1288


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  518 bits (1335), Expect = e-144
 Identities = 257/473 (54%), Positives = 340/473 (71%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            H+N TW LV+ P  +K I  KW+FKIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 815  HRNNTWELVELPKGRKAIGNKWVFKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 873

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  TIRI+LA+ A ++L LEQLDVKTAFLHGELEE IYM QP GFEEK +EN+ C L
Sbjct: 874  PVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRL 933

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+   +    + LLLYVDDML+  
Sbjct: 934  TKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVG 993

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D++  LK+ L  EFDMKDLG A++ILGM I RDR DR +++SQK++LQK++ +F+M 
Sbjct: 994  PNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQ 1053

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
               P+ TPL  +++LS    P ++ ++ +M+ +P   A+GS+MY+MI TRPDIA ++  +
Sbjct: 1054 DYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTV 1113

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SRFM++PG++HW A+K +LRYI  T    L +      F + GYVDSDFAGD D RKSTT
Sbjct: 1114 SRFMADPGKEHWNAVKRILRYIRGTSGAALCF--GGSEFTIRGYVDSDFAGDLDKRKSTT 1171

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A KE IW Q LL EL     K  +Y
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVY 1231

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DS S LH+ +N  +H RTKHI V+YHF+RE V  G VN++KI TKDN AD +
Sbjct: 1232 CDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVM 1284


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  516 bits (1329), Expect = e-143
 Identities = 253/473 (53%), Positives = 342/473 (72%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            H+NKTW LV+ P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 815  HRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 873

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP GF+E+GKEN+ C L
Sbjct: 874  PVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRL 933

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +    + LLLYVDDML+  
Sbjct: 934  TKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVG 993

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D++  LK+ L  EFDMKDLG A++ILGM I RDR DR +++SQK++L+K++ +F+M 
Sbjct: 994  PNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQ 1053

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CKP+ TPL  +F+LS    P  + ++ +M+ +P   A+GS+MY+MI TRPDIA ++ ++
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SRFM++PG++HW A+K ++RYI  T   G+          + GYVDSDFAGD D RKSTT
Sbjct: 1114 SRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVWGYVDSDFAGDHDKRKSTT 1171

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A KE IW+Q L+ EL     +  +Y
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVY 1231

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI T DN AD +
Sbjct: 1232 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVM 1284


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  516 bits (1329), Expect = e-143
 Identities = 253/471 (53%), Positives = 341/471 (72%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            H+NKTW LV+ P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 815  HRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 873

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP GF+E+GKEN+ C L
Sbjct: 874  PVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRL 933

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +    + LLLYVDDML+  
Sbjct: 934  TKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVG 993

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D++  LK+ L  EFDMKDLG A++ILGM I RDR DR +++SQK++L+K++ +F+M 
Sbjct: 994  PNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQ 1053

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CKP+ TPL  +F+LS    P  + ++ +M+ +P   A+GS+MY+MI TRPDIA ++ ++
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SRFM++PG++HW A+K ++RYI  T   G+          + GYVDSDFAGD D RKSTT
Sbjct: 1114 SRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTT 1171

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A KE IW+Q L+ EL     +  +Y
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVY 1231

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPAD 1328
             DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI T DN AD
Sbjct: 1232 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLAD 1282


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  514 bits (1324), Expect = e-143
 Identities = 252/473 (53%), Positives = 341/473 (72%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            H+NKTW LV+ P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 815  HRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFS 873

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP GF+E+GKEN+ C L
Sbjct: 874  PVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRL 933

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +    + LLLYVDDML+  
Sbjct: 934  TKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVG 993

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D++  LK+ L  EFDMKDLG A++ILGM I RDR D  +++SQK++L+K++ +F+M 
Sbjct: 994  PNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQ 1053

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CKP+ TPL  +F+LS    P  + ++ +M+ +P   A+GS+MY+MI TRPDIA ++ ++
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SRFM++PG++HW A+K ++RYI  T   G+          + GYVDSDFAGD D RKSTT
Sbjct: 1114 SRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTT 1171

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y FTLA   +SW S+LQ VVALSTTEAEY+A+T+A KE IW+Q L+ EL     +  +Y
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVY 1231

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI T DN AD +
Sbjct: 1232 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVM 1284


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
            gi|18542925|gb|AAL75759.1| Putative pol polyprotein
            [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1005

 Score =  514 bits (1323), Expect = e-142
 Identities = 251/455 (55%), Positives = 334/455 (73%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KN TW LV  P ++K + CKWIFK KE  S +EPPRFKA+LVAKGFSQ+ G+D+N++FSP
Sbjct: 518  KNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSP 577

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VVK+ +IR   +IVA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GKE   C LK
Sbjct: 578  VVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLK 637

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            +S YGLKQSPRQWYKRFD FML  GF +S +DSC+Y     V  +   LLYVDDMLIA K
Sbjct: 638  RSFYGLKQSPRQWYKRFDLFMLSHGFKRSEFDSCVYI--KFVNGSPIYLLYVDDMLIAAK 695

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
             +++IT LK  L SEFDMKDLG+A +ILGM I+RDR    LF+SQ+S+++ ++ +F+MH 
Sbjct: 696  SKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKNVLQRFNMHD 755

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
             K V  P+A HF+LS   C  TD+    M+ +P   A+GS+MY+M+ +RPD+++++SL+S
Sbjct: 756  AKLVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVS 815

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            R+M+NPG++HW A++W+ RY+  T D  L +        LVGYVDSDFA D D R+S T 
Sbjct: 816  RYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKG--LVGYVDSDFAADLDKRRSLTG 873

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FT++   +SWK+ LQPVVA STTEAEY+A  EA KE +WL+GL +EL  ++S  +++ 
Sbjct: 874  YVFTISSCAMSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCIILFC 933

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSG 1373
            DSQS + L K+ ++HERTKHI++KYH++R+ V  G
Sbjct: 934  DSQSAICLTKDQMFHERTKHIDIKYHYVRDVVVQG 968


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  511 bits (1316), Expect(2) = e-142
 Identities = 256/473 (54%), Positives = 338/473 (71%)
 Frame = -1

Query: 2740 HKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFS 2561
            HKN TW LV  P  +K I  KW+FKIK     ++  R++ARLV KG++Q EGIDFNEIFS
Sbjct: 808  HKNNTWDLVPLPQGRKPIGNKWVFKIKR-NGDDQVERYRARLVVKGYAQKEGIDFNEIFS 866

Query: 2560 PVVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLL 2381
            PVV+  T+R++LA+ A ++L LEQLDVKTAFLHG+LEE IYM QP GFE+K  +N+ C L
Sbjct: 867  PVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRL 926

Query: 2380 KKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIAC 2201
             KSLYGLKQ+PR WYKRFDSF++  G+ + N D C YF     +  V LLLYVDDML+A 
Sbjct: 927  NKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAG 986

Query: 2200 KHRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMH 2021
             ++D I  LK+ L  EF+MKDLG A++ILGM I RDR +R +++SQK++L+KI+S+FSM 
Sbjct: 987  PNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQ 1046

Query: 2020 LCKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLL 1841
             CK + TPL  + ++S    P  ++ + +M+ +P   A+GS+M++MI TRPDIA ++ ++
Sbjct: 1047 DCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVV 1106

Query: 1840 SRFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTT 1661
            SR+M+NPGR+HW  +K +LRYI  T D  L Y     +F + GYVDSD+AGD D  KSTT
Sbjct: 1107 SRYMANPGREHWNCVKRILRYIKGTSDVALCY--GGSDFIINGYVDSDYAGDLDKSKSTT 1164

Query: 1660 SYFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIY 1481
             Y F +A   +SW S+LQ VVA STTEAEY+A+T+A KE IWL+ LL EL        ++
Sbjct: 1165 GYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLF 1224

Query: 1480 TDSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
             DSQS LHL +N  +H RTKHI V+YHFIREKV  G V+++KI T DN ADFL
Sbjct: 1225 CDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFL 1277



 Score = 23.9 bits (50), Expect(2) = e-142
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 1326 FCTKIVITDKFSLCRN 1279
            F TKI+  DKF+ CR+
Sbjct: 1276 FLTKIINVDKFTWCRS 1291


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  511 bits (1316), Expect = e-142
 Identities = 251/472 (53%), Positives = 340/472 (72%)
 Frame = -1

Query: 2737 KNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVEGIDFNEIFSP 2558
            KNKTW LV+ P  +K I  KW++KIK  +  ++  R++ARLV KG++Q EGIDFNEIFSP
Sbjct: 816  KNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFSP 874

Query: 2557 VVKYKTIRIMLAIVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLK 2378
            VV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP GF+E+GKEN+ C L 
Sbjct: 875  VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934

Query: 2377 KSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGDNVETAVYLLLYVDDMLIACK 2198
            KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +    + LLLYVDD+L+   
Sbjct: 935  KSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGP 994

Query: 2197 HRDKITRLKSLLKSEFDMKDLGSASRILGMNISRDRADRSLFISQKSFLQKIVSKFSMHL 2018
            ++D++  LK+ L  EFDMKDLG A++ILGM I RDR DR +++SQK++L+K++ +F+M  
Sbjct: 995  NKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQD 1054

Query: 2017 CKPVCTPLASHFQLSEKSCPKTDKKKNDMTNIP*RMAIGSVMYSMISTRPDIAYSISLLS 1838
            CKP+ TPL  +F+LS    P  + ++ +M+ +P   A+GS+MY+MI TRPDIA ++ ++S
Sbjct: 1055 CKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVS 1114

Query: 1837 RFMSNPGRDHWAALKWLLRYINETIDRGLLYHNWSDNFELVGYVDSDFAGDKDGRKSTTS 1658
            RFM++PG++HW A+K ++RYI  T   G+          + GYVDSDFAGD D RKSTT 
Sbjct: 1115 RFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 1657 YFFTLADNCISWKSQLQPVVALSTTEAEYIASTEAIKEVIWLQGLLSELHVLNSKAVIYT 1478
            Y FTL    +SW S+LQ VVALSTTEAEY+A+T+A KE IW+Q L+ EL     +  +Y 
Sbjct: 1173 YVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 1477 DSQSCLHLCKNSIYHERTKHINVKYHFIREKVSSGIVNIEKISTKDNPADFL 1322
            DSQS LH+ +N  +H RTKHI V+YHF+RE V  G V+++KI T DN AD +
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVM 1284