BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00006248
         (813 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB93550.1| DNA-directed RNA polymerases I, II, and III subun...   162   2e-37
gb|ESW15363.1| hypothetical protein PHAVU_007G066800g [Phaseolus...   162   2e-37
ref|XP_006421865.1| hypothetical protein CICLE_v10006171mg [Citr...   162   2e-37
ref|XP_006857886.1| hypothetical protein AMTR_s00069p00112860 [A...   162   2e-37
ref|XP_004493541.1| PREDICTED: DNA-directed RNA polymerases I, I...   162   2e-37
gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicoti...   162   2e-37
ref|XP_003536478.1| PREDICTED: DNA-directed RNA polymerases II, ...   162   2e-37
ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycin...   162   2e-37
ref|XP_002510834.1| DNA-directed RNA polymerase subunit rpb6, pu...   162   2e-37
ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, I...   162   2e-37
ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, I...   162   2e-37
emb|CAN62586.1| hypothetical protein VITISV_000776 [Vitis vinifera]   162   2e-37
ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III ...   162   2e-37
gb|ESW14698.1| hypothetical protein PHAVU_007G009900g [Phaseolus...   160   4e-37
ref|XP_006341053.1| PREDICTED: DNA-directed RNA polymerases II a...   160   5e-37
ref|XP_002318240.2| hypothetical protein POPTR_0012s13610g [Popu...   160   5e-37
gb|EOY23108.1| DNA-directed RNA polymerase II subunit protein is...   160   5e-37
gb|EOY23106.1| DNA-directed RNA polymerase II subunit protein is...   160   5e-37
gb|EMJ05946.1| hypothetical protein PRUPE_ppa013037mg [Prunus pe...   160   5e-37
ref|XP_004246445.1| PREDICTED: DNA-directed RNA polymerases I, I...   160   5e-37

>gb|EXB93550.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Morus
           notabilis]
          Length = 143

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>gb|ESW15363.1| hypothetical protein PHAVU_007G066800g [Phaseolus vulgaris]
          Length = 142

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 119 GSYEDWGVDELIVEDSWKR 137


>ref|XP_006421865.1| hypothetical protein CICLE_v10006171mg [Citrus clementina]
           gi|568874475|ref|XP_006490341.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 6A-like [Citrus
           sinensis] gi|557523738|gb|ESR35105.1| hypothetical
           protein CICLE_v10006171mg [Citrus clementina]
          Length = 143

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>ref|XP_006857886.1| hypothetical protein AMTR_s00069p00112860 [Amborella trichopoda]
           gi|548861988|gb|ERN19353.1| hypothetical protein
           AMTR_s00069p00112860 [Amborella trichopoda]
          Length = 144

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 61  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 121 GSYEDWGVDELIVEDSWKR 139


>ref|XP_004493541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2-like [Cicer arietinum]
          Length = 145

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 62  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 121

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 122 GSYEDWGVDELIVEDSWKR 140


>gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
           gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA
           polymerase IIb [Nicotiana tabacum]
          Length = 143

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>ref|XP_003536478.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           6A-like [Glycine max]
          Length = 142

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 119 GSYEDWGVDELIVEDSWKR 137


>ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycine max]
           gi|255626491|gb|ACU13590.1| unknown [Glycine max]
          Length = 142

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 119 GSYEDWGVDELIVEDSWKR 137


>ref|XP_002510834.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
           communis] gi|223549949|gb|EEF51436.1| DNA-directed RNA
           polymerase subunit rpb6, putative [Ricinus communis]
          Length = 124

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 41  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 100

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 101 GSYEDWGVDELIVEDSWKR 119


>ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 isoform 1 [Vitis vinifera]
           gi|297741100|emb|CBI31831.3| unnamed protein product
           [Vitis vinifera]
          Length = 142

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 119 GSYEDWGVDELIVEDSWKR 137


>ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 [Vitis vinifera] gi|302143496|emb|CBI22057.3|
           unnamed protein product [Vitis vinifera]
          Length = 141

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 58  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 117

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 118 GSYEDWGVDELIVEDSWKR 136


>emb|CAN62586.1| hypothetical protein VITISV_000776 [Vitis vinifera]
          Length = 140

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 57  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 116

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 117 GSYEDWGVDELIVEDSWKR 135


>ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
           [Medicago truncatula] gi|124360124|gb|ABN08140.1|
           DNA-directed RNA polymerase, 14 to 18 kDa subunit
           [Medicago truncatula] gi|355500206|gb|AES81409.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 [Medicago truncatula] gi|388508874|gb|AFK42503.1|
           unknown [Medicago truncatula]
           gi|388517849|gb|AFK46986.1| unknown [Medicago
           truncatula]
          Length = 145

 Score =  162 bits (409), Expect = 2e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 62  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 121

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 122 GSYEDWGVDELIVEDSWKR 140


>gb|ESW14698.1| hypothetical protein PHAVU_007G009900g [Phaseolus vulgaris]
           gi|561015895|gb|ESW14699.1| hypothetical protein
           PHAVU_007G009900g [Phaseolus vulgaris]
          Length = 141

 Score =  160 bits (406), Expect = 4e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 119 GSYEDWGVDELIVEDSWKR 137


>ref|XP_006341053.1| PREDICTED: DNA-directed RNA polymerases II and V subunit 6B-like
           [Solanum tuberosum]
          Length = 144

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 121 GSYEDWGVDELIVEDSWKR 139


>ref|XP_002318240.2| hypothetical protein POPTR_0012s13610g [Populus trichocarpa]
           gi|550327061|gb|EEE96460.2| hypothetical protein
           POPTR_0012s13610g [Populus trichocarpa]
          Length = 183

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 100 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 159

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 160 GSYEDWGVDELIVEDSWKR 178


>gb|EOY23108.1| DNA-directed RNA polymerase II subunit protein isoform 3 [Theobroma
           cacao]
          Length = 143

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGE+DPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGESDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>gb|EOY23106.1| DNA-directed RNA polymerase II subunit protein isoform 1 [Theobroma
           cacao]
          Length = 143

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSKYMTKYERARILGTRALQISMNAPVMVELEGE+DPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGESDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>gb|EMJ05946.1| hypothetical protein PRUPE_ppa013037mg [Prunus persica]
          Length = 143

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 120 GSYEDWGVDELIVEDSWKR 138


>ref|XP_004246445.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2-like [Solanum lycopersicum]
          Length = 144

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/79 (98%), Positives = 79/79 (100%)
 Frame = +2

Query: 284 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 463
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120

Query: 464 GSYEDWGVDELIVEDSWKR 520
           GSYEDWGVDELIVEDSWKR
Sbjct: 121 GSYEDWGVDELIVEDSWKR 139