BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00005664
         (3372 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron sp...  1034   0.0  
ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron sp...  1027   0.0  
gb|EMJ28219.1| hypothetical protein PRUPE_ppa001134mg [Prunus pe...  1024   0.0  
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]  1003   0.0  
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...  1003   0.0  
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...   998   0.0  
gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]       997   0.0  
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   979   0.0  
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   976   0.0  
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...   975   0.0  
ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron sp...   975   0.0  
gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]       962   0.0  
gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitat...   949   0.0  
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...   943   0.0  
ref|XP_002517017.1| conserved hypothetical protein [Ricinus comm...   940   0.0  
ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron sp...   921   0.0  
ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron sp...   915   0.0  
ref|XP_003590782.1| Chloroplastic group IIA intron splicing faci...   914   0.0  
ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arab...   912   0.0  
ref|XP_006300008.1| hypothetical protein CARUB_v10016231mg [Caps...   888   0.0  

>ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum tuberosum]
          Length = 883

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 556/875 (63%), Positives = 643/875 (73%), Gaps = 27/875 (3%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHK------ 3079
            MALVP+HQFYPRTT                 RL F RY  S PFK       H       
Sbjct: 1    MALVPSHQFYPRTT-----------------RLSFLRYSSSKPFKKPNFHAPHDIVNQDC 43

Query: 3078 -----------------STINSDSTPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXX 2950
                               +N D   ++ P KRSNF   + ++RW   + +         
Sbjct: 44   IFKQNPPKRSNFMITPHDVVNQDCIFRRTPSKRSNFVVKNSSRRWNLDTISPNLKSRDSG 103

Query: 2949 XXXXXXSWLDKWNEHKQNKLKGTPQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLKK 2770
                  SWL KWN  + +      Q+V+NYRN                STM+RIVEKLKK
Sbjct: 104  TSVFSSSWLGKWNGTRNDIKLKKAQIVLNYRNSNGDTSGSDCEESISGSTMDRIVEKLKK 163

Query: 2769 FGYVXXXXXXXXXXXXXXK-GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVR 2593
            FGY               + GSIEDIF+VEEGILPN RGGFSE+SPFGDENV + +G VR
Sbjct: 164  FGYADEATEKEKKEKRVVEKGSIEDIFFVEEGILPNVRGGFSEESPFGDENVIAKDGVVR 223

Query: 2592 FPWEKKEVKEEAARQ---KSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVV 2422
            FPWE+  VK+E +     +SR+ +AELTLP SELRRL NL +RIKNK RI G+GVT +VV
Sbjct: 224  FPWERPLVKKEESNSMASRSRTHLAELTLPASELRRLTNLALRIKNKSRITGAGVTQQVV 283

Query: 2421 EKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPS 2242
            E I EKWK+SEVVRLK+EGA ALNMKRMHEILERKTGGLVIWRSGTSVALYRGV YE PS
Sbjct: 284  ETIREKWKTSEVVRLKVEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRGVSYETPS 343

Query: 2241 EKLQKRLYNKNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPE 2062
            E+++KR+  +++I H  S +     +   S  NP + V + + D V+  +EN + +   E
Sbjct: 344  ERMKKRIMRRDEIRHKNSPI-----VDGESNQNPRNDVDSLREDSVDTSEENKNIDRQSE 398

Query: 2061 VNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKE 1882
            VNYEDEVDK+LDGLG RYTDWPG GPLPVDADLLP  +PGY PPFRILPYGVRST+  +E
Sbjct: 399  VNYEDEVDKLLDGLGPRYTDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRSTLAARE 458

Query: 1881 ATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDI 1702
            ATAL+RLARVLPPHFALGRSRQHQGLA+ MVKLW+RSSIAKIA+KRGVQLTTSERMAEDI
Sbjct: 459  ATALRRLARVLPPHFALGRSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSERMAEDI 518

Query: 1701 KKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTP 1522
            KKLTGG+LLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEE+ARLRAS L+T 
Sbjct: 519  KKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEKARLRASLLLTA 578

Query: 1521 HRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAE 1342
                 + S TAGTL ETLDADARWGK+LD+  KE VMREAE+LRH  LVRKLEKKL  AE
Sbjct: 579  GVTTINSSRTAGTLGETLDADARWGKRLDDKDKENVMREAELLRHGDLVRKLEKKLAFAE 638

Query: 1341 RKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 1162
            RK+M+AER LSKVEE+LNP +R A+PDS+TDEERFMFRKLGLRMKAFLLLGRRG+FDGTV
Sbjct: 639  RKLMKAERVLSKVEETLNPLDRRAEPDSLTDEERFMFRKLGLRMKAFLLLGRRGIFDGTV 698

Query: 1161 ENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNY 982
            ENMHLHWKYRELVKI+VKAK+F++V  IAL+LE+ESGGVLVSVDKVSKGYAIIVFRGK+Y
Sbjct: 699  ENMHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGVLVSVDKVSKGYAIIVFRGKDY 758

Query: 981  ERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDE 802
             RPP LRPKNLLTKRKALARSIELQRREALL HISAVQ RVGQL +EIEQ+A +K+  D+
Sbjct: 759  SRPPTLRPKNLLTKRKALARSIELQRREALLEHISAVQTRVGQLTAEIEQLASLKDSTDD 818

Query: 801  ELYNRLDSAYPSXXXXXXXXXXXXEAYIETYNSTN 697
            ELY++L+SAY S            +AYIE +++ N
Sbjct: 819  ELYDKLNSAYSS--EDEDSEEEGDDAYIEVFDNDN 851


>ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 883

 Score = 1027 bits (2655), Expect = 0.0
 Identities = 555/876 (63%), Positives = 644/876 (73%), Gaps = 28/876 (3%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MALVP+HQFYPRTT                 RL FFRY  S PFK       H   +N D
Sbjct: 1    MALVPSHQFYPRTT-----------------RLSFFRYSSSKPFKKPNFHAPH-DIVNQD 42

Query: 3060 STPQQNPQKRSNF-----DGGSKN-------------------KRWGFASEAALXXXXXX 2953
               +QNP KRSNF     D  +K+                   +RW   + +        
Sbjct: 43   CIFKQNPSKRSNFVVTPHDVVNKDCIFKRTPLKRSNFVVKNSSRRWNLDTISPNLKSRDS 102

Query: 2952 XXXXXXXSWLDKWNEHKQNKLKGTPQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLK 2773
                   SWL KWNE + +      Q+V+NYRN                STM+RIVEKLK
Sbjct: 103  GTSVFSSSWLGKWNETRNDIKLKKAQIVLNYRNSNGDTSGSDCEESISGSTMDRIVEKLK 162

Query: 2772 KFGYVXXXXXXXXXXXXXXK-GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEV 2596
            KFGY               + GSIEDIF+VEEGILPN RGGFSE++PFGDEN+ + +G V
Sbjct: 163  KFGYADEATEKEKREKRVVEKGSIEDIFFVEEGILPNVRGGFSEETPFGDENIIAKDGVV 222

Query: 2595 RFPWEKKEVKEEAARQ---KSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEV 2425
             FPWEK  VK+E +     +SR+ +AELTLP SELRRL NL +RIKNK RI G+GVT +V
Sbjct: 223  GFPWEKPLVKKEESNSMASRSRTHLAELTLPASELRRLTNLALRIKNKSRITGAGVTQQV 282

Query: 2424 VEKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVP 2245
            VE I EKWK+SEVVRLK+EGA ALNMKRMHEILERKTGGLVIWRSGTSVALYRGV YE P
Sbjct: 283  VETIREKWKTSEVVRLKVEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRGVSYETP 342

Query: 2244 SEKLQKRLYNKNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLP 2065
            SE+++KR+  +++I    S +     +   S  N  + V + + D V+  +EN   +   
Sbjct: 343  SERMKKRIMRRDEIRQKNSPI-----VDGESNQNSRNDVDSLREDSVDTSEENKSIDRQS 397

Query: 2064 EVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHK 1885
            EVNYEDEVDK+LDGLG RYTDWPG GPLPVDADLLP  +PGY PPFRILPYGVRST+  +
Sbjct: 398  EVNYEDEVDKLLDGLGPRYTDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRSTLAAR 457

Query: 1884 EATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAED 1705
            EATAL+RLARVLPPHFALGRSRQHQGLA+ MVKLW+RSSIAKIA+KRGVQLTTSERMAED
Sbjct: 458  EATALRRLARVLPPHFALGRSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSERMAED 517

Query: 1704 IKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVT 1525
            IKKLTGG+LLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEE+ARLRAS  +T
Sbjct: 518  IKKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEKARLRASLNLT 577

Query: 1524 PHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIA 1345
                  + S TAGTL ETLDADARWGK+LD+ HKE VMREAE+LRH  LVRKLEKKL  A
Sbjct: 578  AGVTTINSSRTAGTLGETLDADARWGKRLDDKHKENVMREAELLRHGDLVRKLEKKLAFA 637

Query: 1344 ERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 1165
            E+K+M+AER LSKVEE+LNP +R A+PDS+TDEERFMFRKLGLRMKAFLLLGRRG+FDGT
Sbjct: 638  EKKLMKAERVLSKVEETLNPLDRHAEPDSLTDEERFMFRKLGLRMKAFLLLGRRGIFDGT 697

Query: 1164 VENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKN 985
            VENMHLHWKYRELVKI+VKAK+F++V  IAL+LE+ESGG+LVSVDKVSKGYAIIVFRGK+
Sbjct: 698  VENMHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGILVSVDKVSKGYAIIVFRGKD 757

Query: 984  YERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGD 805
            Y RPP LRPKNLLTKRKALARSIELQRREALL HISAVQ RVGQL +EIEQ+A +K+  D
Sbjct: 758  YSRPPTLRPKNLLTKRKALARSIELQRREALLEHISAVQTRVGQLTAEIEQLASLKDSAD 817

Query: 804  EELYNRLDSAYPSXXXXXXXXXXXXEAYIETYNSTN 697
            +ELY++L+SAY S            +A+IE +++ N
Sbjct: 818  DELYDKLNSAYSS--EDEDSEEEGDDAFIEVFDNDN 851


>gb|EMJ28219.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score = 1024 bits (2648), Expect = 0.0
 Identities = 553/868 (63%), Positives = 649/868 (74%), Gaps = 20/868 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            M LVP+ Q YP  T+  DSFQSS +K H    +  FR G SIPFK      TH  TI+S 
Sbjct: 1    MTLVPSRQLYP--TSLFDSFQSSFSKFH-GPHIHLFRCGSSIPFKKHTFYATHY-TISST 56

Query: 3060 STPQQNPQKRSNFDGGSK-----NKRWGFASEAALXXXXXXXXXXXXXSWLDKWNE-HKQ 2899
              P+QNP ++SNF   ++       +  F+S +                W+DKWNE HK 
Sbjct: 57   LNPEQNPLRKSNFVRKNQPISQYKPKKNFSSSS----------------WIDKWNESHKH 100

Query: 2898 NKLKGTPQVVVNYRNXXXXXXXXXXXXXXXXS--------TMERIVEKLKKFGYVXXXXX 2743
            N+ K  P+ V++Y++                         TME+IVEKLKKFGYV     
Sbjct: 101  NRPK-PPRAVLDYQSSESGNLSGSGYAEGDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNE 159

Query: 2742 XXXXXXXXXK--GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEV 2569
                        GS+EDIFY+EEG+LPN+RGGFSE+SP G ENVF  +G+VRFPWEK + 
Sbjct: 160  NKGEVRDSVIEKGSVEDIFYIEEGMLPNSRGGFSEESPLGIENVFGGDGKVRFPWEKPKE 219

Query: 2568 KEE----AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKW 2401
            +E+    + R+KSR+S+AELTLPESELRRL NLT + K+K RIGG GVT  VVE IHE+W
Sbjct: 220  EEKQEEGSVRRKSRTSLAELTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERW 279

Query: 2400 KSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRL 2221
            K+SE+VRLKIEG  ALNMKRMHEILERKTGGLVIWRSGTS++LYRGV YEVPS KL KR+
Sbjct: 280  KTSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPSVKLNKRI 339

Query: 2220 YNKNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEV 2041
            Y KNDI   P     D ++   +E    S V T Q    N  +E  D E L EV YEDEV
Sbjct: 340  YKKNDISSAPLPTVADKSVGDFAELASYSNVKTPQEKSENTSQEKEDTEQLAEVKYEDEV 399

Query: 2040 DKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRL 1861
            DK+LD LG R+ DWPG  PLPVDAD+LP  +PGY PPFR+LPYGVRST+G KEAT+L+RL
Sbjct: 400  DKLLDSLGPRFKDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRL 459

Query: 1860 ARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGI 1681
            ARVLPPHFALGRSRQ QGLA AM KLWE+S IAKIALKRGVQLTTSERMAEDIK+LTGG+
Sbjct: 460  ARVLPPHFALGRSRQLQGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGV 519

Query: 1680 LLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDE 1501
            +LSRNKDFLVFYRGK+FLSP+V EALLE+ERLAK+LQDEEEQARLRASA+  P+ E+   
Sbjct: 520  MLSRNKDFLVFYRGKNFLSPDVTEALLERERLAKSLQDEEEQARLRASAMFIPNVEVAQH 579

Query: 1500 SGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAE 1321
             GTAGTL ETLDADA+WGK+LD   KE+VMREA+ILRHA LVRKLE+KL  AERK+MRAE
Sbjct: 580  FGTAGTLGETLDADAKWGKRLD---KEKVMREADILRHAHLVRKLERKLSFAERKLMRAE 636

Query: 1320 RALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHW 1141
            +ALSKVEESL P+++ ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHW
Sbjct: 637  QALSKVEESLKPSKQQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHW 696

Query: 1140 KYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALR 961
            KYRELVKI+V AK+F++V++IAL+LE+ESGGVLVSVDKVSK +AIIV+RGK+Y RP  LR
Sbjct: 697  KYRELVKIMVNAKTFEQVKNIALALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLR 756

Query: 960  PKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLD 781
            PKNLLTKRKALARSIELQR+EALL HISAVQ +V  LRSEIEQM  VK+ GDE LYN+LD
Sbjct: 757  PKNLLTKRKALARSIELQRQEALLKHISAVQSKVDTLRSEIEQMDSVKDQGDEALYNKLD 816

Query: 780  SAYPSXXXXXXXXXXXXEAYIETYNSTN 697
            S+YP+            +AY+ETYN  N
Sbjct: 817  SSYPT----DDEDSEEVDAYLETYNREN 840


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score = 1003 bits (2594), Expect = 0.0
 Identities = 553/903 (61%), Positives = 656/903 (72%), Gaps = 22/903 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MAL+P+ QFYP TT+F+DSF S        TRL+FFRYG S  F+      T ++TI S+
Sbjct: 1    MALLPSRQFYPTTTSFLDSFHS--------TRLQFFRYGSSNRFRTHSSYVT-RNTIASN 51

Query: 3060 STPQQNPQKRSN----------FDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWN 2911
            ST   NPQ++SN          +D G  +   G                    +W+DKWN
Sbjct: 52   ST---NPQRKSNIVFTNTPVSQYDSGGVSSSGG--------------------NWIDKWN 88

Query: 2910 EHKQNKLKGTPQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLKKFGYVXXXXXXXXX 2731
               Q       + V+NYRN                 TME+IVEKLKKFGY+         
Sbjct: 89   GPHQKSHPKEXRPVMNYRNSETVSRSDGGSGGGS--TMEKIVEKLKKFGYMDDVKETKEN 146

Query: 2730 XXXXXK--GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEEA 2557
                    GSIEDIFY+EEGILPN +GGFS  SP G EN    NGEVRFPWE+ +V+E +
Sbjct: 147  VQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERPKVEEGS 206

Query: 2556 ARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSEVVRL 2377
             R KSR+S+AELTLPESELRRL+NLT+R KNK +IGG GVT  VV+ I EKWK+SE+V+L
Sbjct: 207  VRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKL 266

Query: 2376 KIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKNDIPH 2197
            K EGA+ALNM+R+HEILERKTGGLVIWRSGTSV+LYRGV YEVP + L KR+Y KN+  H
Sbjct: 267  KCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQ-LNKRVYKKNETSH 325

Query: 2196 DPSLLTTDANISQLSEDNPSST---------VHTAQADIVNDGKENNDAEPLPEVNYEDE 2044
              S  +   N   +S +  S           VH +QA +     EN D E   EV YEDE
Sbjct: 326  S-SFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENKDTES--EVKYEDE 382

Query: 2043 VDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKR 1864
            +DK+LDGLG RYTDWP   PLP+DADLLP  I GY PPFRILPYGVRS++G KEATAL+R
Sbjct: 383  IDKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRR 442

Query: 1863 LARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGG 1684
            LARVLPPHFALGRSRQ +GLA AM+KLWERSSIAK+ALKRGVQLTTSERMAEDIKKLTGG
Sbjct: 443  LARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGG 502

Query: 1683 ILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTD 1504
            +LLSRNKDFLVFYRGK+FLS +V EALLE+ERLAK LQDEEEQARLRAS L+TP   +T+
Sbjct: 503  VLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITE 562

Query: 1503 ESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRA 1324
            + G+AGTL ETL+ADARWGK+LD+  K++++++AE+ RHA+LVRKLE++L +AERK+M+A
Sbjct: 563  QVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKA 622

Query: 1323 ERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 1144
            E ALSKVEE L PA R ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLH
Sbjct: 623  ENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLH 682

Query: 1143 WKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPAL 964
            WKYRELVKIIVKAK+FD+V+  AL+LESESGGVLVSVDKVSKG+AI+VFRGK+Y+RP  L
Sbjct: 683  WKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTL 742

Query: 963  RPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRL 784
            RPKNLLTKRKALARSIELQRREAL NHISA+Q+ V +LRSEIEQM  VK+HGDEELY++L
Sbjct: 743  RPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKL 802

Query: 783  DSAYPSXXXXXXXXXXXXEAYIETYNSTNXXXXXXXXXXXSNGQHHLK-SISLDIEEDAS 607
            DSAY +            EAY+ETY   N               HH++ +   DI+++  
Sbjct: 803  DSAYAT--EDEHTEEEGDEAYLETYADENDGEHESDNSIH---NHHIETNFPYDIQDEEF 857

Query: 606  ETE 598
            ETE
Sbjct: 858  ETE 860


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score = 1003 bits (2592), Expect = 0.0
 Identities = 555/904 (61%), Positives = 658/904 (72%), Gaps = 23/904 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MAL+P+ QFYP TT+F+DSF S        TRL+FFRYG S  F+        ++TI S+
Sbjct: 1    MALLPSRQFYPTTTSFLDSFHS--------TRLQFFRYGSSNRFRTHS-SYVARNTIASN 51

Query: 3060 STPQQNPQKRSN----------FDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWN 2911
            ST   NPQ++SN          +D G  +   G                    +W+DKWN
Sbjct: 52   ST---NPQRKSNIVFTNTPVSQYDSGGVSSSGG--------------------NWIDKWN 88

Query: 2910 EHKQNKLKGTPQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLKKFGYVXXXXXXXXX 2731
               Q       + V+NYRN                 TME+IVEKLKKFGY+         
Sbjct: 89   GPHQKSHPKESRPVMNYRNSETVSRSDGGSGGGS--TMEKIVEKLKKFGYMDDVKETKEN 146

Query: 2730 XXXXXK--GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEEA 2557
                    GSIEDIFY+EEGILPN +GGFS  SP G EN    NGEVRFPWE+ +V+E +
Sbjct: 147  VQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERPKVEEGS 206

Query: 2556 ARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSEVVRL 2377
             R KSR+S+AELTLPESELRRL+NLT+R KNK +IGG GVT  VV+ I EKWK+SE+V+L
Sbjct: 207  VRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKL 266

Query: 2376 KIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKNDIPH 2197
            K EGA+ALNM+R+HEILERKTGGLVIWRSGTSV+LYRGV YEVP + L KR+Y KN+  H
Sbjct: 267  KCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQ-LNKRVYKKNETSH 325

Query: 2196 DPSLLTTDANISQLSEDNPSST---------VHTAQADI-VNDGKENNDAEPLPEVNYED 2047
              S  +   N   +S +  S           VH +QA + + DG EN D E   EV YED
Sbjct: 326  S-SFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDG-ENKDTES--EVKYED 381

Query: 2046 EVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALK 1867
            E+DK+LDGLG RYTDWPG  PLP+DADLLP  I GY PPFRILPYGVRS++G KEATAL+
Sbjct: 382  EIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALR 441

Query: 1866 RLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTG 1687
            RLARVLPPHFALGRSRQ +GLA AM+KLWERSSIAK+ALKRGVQLTTSERMAEDIKKLTG
Sbjct: 442  RLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTG 501

Query: 1686 GILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELT 1507
            G+LLSRNKDFLVFYRGK+FLS +V EALLE+ERLAK LQDEEEQARLRAS L+TP   +T
Sbjct: 502  GVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGIT 561

Query: 1506 DESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMR 1327
            ++ G+AGTL ETL+ADARWGK+LD+  K++++++AE+ RHA+LVRKLE++L +AERK+M+
Sbjct: 562  EQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMK 621

Query: 1326 AERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHL 1147
            AE ALSKVEE L PA R ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHL
Sbjct: 622  AENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHL 681

Query: 1146 HWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPA 967
            HWKYRELVKIIVKAK+FD+V+  AL+LESESGGVLVSVDKVSKG+AI+VFRGK+Y+RP  
Sbjct: 682  HWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPST 741

Query: 966  LRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNR 787
            LRPKNLLTKRKALARSIELQRREAL NHISA+Q+ V +LRSEIEQM  VK+HGDEELY++
Sbjct: 742  LRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDK 801

Query: 786  LDSAYPSXXXXXXXXXXXXEAYIETYNSTNXXXXXXXXXXXSNGQHHLK-SISLDIEEDA 610
            LDSAY +            EAY+ETY   N               HH++ +   DI+ + 
Sbjct: 802  LDSAYAT--EDEHTEEEGDEAYLETYADENDGEHESDNSIH---NHHIETNFPYDIQGEE 856

Query: 609  SETE 598
             ETE
Sbjct: 857  FETE 860


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
            gi|222864769|gb|EEF01900.1| hypothetical protein
            POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score =  998 bits (2580), Expect = 0.0
 Identities = 532/890 (59%), Positives = 651/890 (73%), Gaps = 9/890 (1%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MALVP+ Q Y      IDSFQSS +K H T  L+FFRY  S P ++         +  + 
Sbjct: 1    MALVPSRQLY------IDSFQSSFSKFHGTP-LQFFRYSSSFPLRSH--------SGYAC 45

Query: 3060 STPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNKLKGT 2881
            S   +NP  +S      K+K    ++ ++               W   WN+  +  L  T
Sbjct: 46   SITDKNPSTKSTSFPTDKSKTLNLSTGSS---------------WFFNWNKPNKQNLPRT 90

Query: 2880 PQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLKKFGYVXXXXXXXXXXXXXXK---G 2710
            PQ V +YR+                 TME+IVEKLKK GY+                  G
Sbjct: 91   PQAVFDYRSNNSNSSGSGS-------TMEKIVEKLKKHGYMDGDVNENKERMQERVIEKG 143

Query: 2709 SIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEE----AARQKS 2542
            S+EDIFYVEEG+LPNARGGFS++SP G E+VF S+GEVRFPWEK + +E+     AR KS
Sbjct: 144  SVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKWTARSKS 203

Query: 2541 RSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSEVVRLKIEGA 2362
            R+S+AELTLPESELRRL+NLT   K+K R+GG GVT EVV+ IH+KWK+SE+ R+K+EGA
Sbjct: 204  RTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGA 263

Query: 2361 SALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKNDIPHDPSLL 2182
             ALNMKRMHEILE KTGGLVIWRSG +V+LYRGV YE P+ K +KR++ K +   +    
Sbjct: 264  PALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKETSSNSLPA 323

Query: 2181 TTDANISQLSEDNPSSTVHTAQ--ADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRY 2008
             T   I   S+++P + +H  +   +I  +     + +   +V YEDEVDK+LDGLG RY
Sbjct: 324  ATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQKETKTQTDVKYEDEVDKLLDGLGPRY 383

Query: 2007 TDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARVLPPHFALG 1828
            TDWPG  PLPVDAD+LP  IPGY PPFRILPYGVR T+G +++T+L+RLARVLPPHFA+G
Sbjct: 384  TDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLPPHFAVG 443

Query: 1827 RSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVF 1648
            RSRQ QGLA AM+KLWE+SSI K+ALKRGVQLTTSERMAEDIKKLTGG+LLSRNKDFLVF
Sbjct: 444  RSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTGGLLLSRNKDFLVF 503

Query: 1647 YRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDESGTAGTLEETL 1468
            YRGKDFLSPEV+EALLE+ERLAK+LQDEEEQARLRASALV P  E+ +ESG AG+LEETL
Sbjct: 504  YRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASALVIPSDEIMEESGIAGSLEETL 563

Query: 1467 DADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERALSKVEESLN 1288
            DADA+WGK+LD+ HKE+++REAEI+RHAS+VR+LEKKL  A+RK+ RAER L+KVE  L 
Sbjct: 564  DADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLEKKLAFAQRKLRRAERTLNKVEGFLK 623

Query: 1287 PAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK 1108
            P+ER ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII+K
Sbjct: 624  PSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILK 683

Query: 1107 AKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKAL 928
            AKSF++V+ IAL+LE+ESGGVLVSVDK+SKGYAIIV+RGK+Y+RP  LRPKNLLTKRKAL
Sbjct: 684  AKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNLLTKRKAL 743

Query: 927  ARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSAYPSXXXXXX 748
            ARSIE+QR EAL NH+SA++ +V ++RSEIEQM  VK+ GDEELY+RLDSAY +      
Sbjct: 744  ARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGFVKDKGDEELYDRLDSAYLTDDDADD 803

Query: 747  XXXXXXEAYIETYNSTNXXXXXXXXXXXSNGQHHLKSISLDIEEDASETE 598
                  EAY+ETYNS N            +  H   ++  +++   SETE
Sbjct: 804  SEDEGDEAYLETYNSENDVDYDDETDSTVHNAHLDTNLLNNVQIQESETE 853


>gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]
          Length = 876

 Score =  997 bits (2578), Expect = 0.0
 Identities = 537/865 (62%), Positives = 643/865 (74%), Gaps = 17/865 (1%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTT---FIDSFQSSVTKLHVTTRLKFFRYGYS-IPFKNQILCETHKST 3073
            M L+PT QF+P TTT   F+DSFQ+ ++K H    L F  Y  S  P K   L   +  T
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLP-LPFCSYDSSNFPLKTSTLYAANY-T 58

Query: 3072 INSDSTPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNK 2893
            + S+S   Q P+ ++        K   F S                  WLD WN+  +  
Sbjct: 59   VTSNSLFHQYPKSKTK---AFPTKDPTFRSN-----------------WLDSWNKTHKGF 98

Query: 2892 LKGTPQVVVNYRNXXXXXXXXXXXXXXXXS----TMERIVEKLKKFGYVXXXXXXXXXXX 2725
                P+ V NYR                      TME+IVEKLKKFGY+           
Sbjct: 99   GPKPPKTVFNYRKKGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGE 158

Query: 2724 XXXK-----GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEE 2560
               K     GSIEDIFYVEEG+LPN RGGFS++SP G ENVF S+GEVRFPWEK++  EE
Sbjct: 159  EEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEE 218

Query: 2559 ----AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSS 2392
                 AR+ S++S+AELTLPESELRRL+NLT R K+K+RI G+GVT EVV+ IHEKWK+ 
Sbjct: 219  EGGWTARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTE 278

Query: 2391 EVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNK 2212
            E+VRLKIEGA ALNMKRMHEILERKTGGLVIWRSGTSV+LYRGV YEVPS  L KR+Y +
Sbjct: 279  EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKR 338

Query: 2211 NDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEVDKM 2032
            N+     +L +       LS       V + QA+     + N D E LPE+ YEDEVDK+
Sbjct: 339  NET-FTYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKL 397

Query: 2031 LDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARV 1852
            L+GLG RYTDWPG  PLPVDADLLP  + GY PPFR+LPYGVRS++G KEAT+L+RLARV
Sbjct: 398  LEGLGPRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARV 457

Query: 1851 LPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLS 1672
            LPPHFA+GRSRQ QGLA AM+KLWE+SSIAKIALKRGVQLTTSERMAEDIKKLTGG+LLS
Sbjct: 458  LPPHFAIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLS 517

Query: 1671 RNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDESGT 1492
            RNKDFLVFYRGK+FLS +VAEAL+E+ERLAK+LQDEEEQARLRASA + P  E+ ++SG 
Sbjct: 518  RNKDFLVFYRGKNFLSADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGA 577

Query: 1491 AGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERAL 1312
            AGTL ETLDADARWGK+LD  HKE+VM+EAEILRHA+LVRKL+K L  A+RK+++AERAL
Sbjct: 578  AGTLGETLDADARWGKRLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERAL 637

Query: 1311 SKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 1132
            +KVE+ L PA+R ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYR
Sbjct: 638  TKVEDYLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 697

Query: 1131 ELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALRPKN 952
            ELVKII+KAK+FD+V+ +AL+LE+ESGGVLVSVD++SKGYAIIV+RGK+Y+RP  +RPKN
Sbjct: 698  ELVKIIMKAKTFDQVKKVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKN 757

Query: 951  LLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSAY 772
            LLTKR+ALARSIELQRREAL+ H+SA+Q +V ++RSEI+QM  ++E GDEE Y+RLDS+Y
Sbjct: 758  LLTKRRALARSIELQRREALVKHVSALQAKVDKIRSEIDQMHSMEEQGDEEFYDRLDSSY 817

Query: 771  PSXXXXXXXXXXXXEAYIETYNSTN 697
            P+            EAY+ETY S N
Sbjct: 818  PT--DDDDTEEEGDEAYLETYESEN 840


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  979 bits (2531), Expect = 0.0
 Identities = 549/929 (59%), Positives = 651/929 (70%), Gaps = 48/929 (5%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MALVP+ QF P T  F DSFQSS +K H  T   FFR G+SIP KN+   +   S    +
Sbjct: 1    MALVPSRQFCPATAIF-DSFQSSFSKFH-GTHFHFFRCGHSIPLKNRFFYQNFSSNSAHE 58

Query: 3060 STPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNE-HKQNKLKG 2884
              P   P+K  +F   +   +      A L              WL KWN+ +K N+LK 
Sbjct: 59   KNP---PRKTCSFSTNNFFSQHDKDDNANLCSSSS---------WLVKWNKPNKYNRLK- 105

Query: 2883 TPQVVVNYRNXXXXXXXXXXXXXXXXS-----------TMERIVEKLKKFGYVXXXXXXX 2737
             PQ  VNYR                             TM +IVEKLKKFGYV       
Sbjct: 106  PPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGNTMGKIVEKLKKFGYVGDGDGDG 165

Query: 2736 XXXXXXXKG--------SIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWE 2581
                   +G        SIEDIFYVEEG+LPNARGGFS++SP G      S+GEV+FPWE
Sbjct: 166  DNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWE 225

Query: 2580 KKEVKEEAA------RQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVE 2419
            K+  KEE A      ++ SR+S+AELTLPESELRRL+NLT + K+K RI G+G+T  VV+
Sbjct: 226  KR--KEEVAEGRWLVKRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVD 283

Query: 2418 KIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSE 2239
             IHEKWK+SE+VRLKIEGA ALNMKRMHEILERKTGGLVIWRSGT+V+LYRGV YEVPS 
Sbjct: 284  IIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV 343

Query: 2238 KLQKRLYNKNDIPHDPSLLTTDANI--------------SQLSEDNPSS-----TVHTAQ 2116
            +L KR+Y +N++P       TD  I              +  +  +PS+      VH  Q
Sbjct: 344  QLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQ 403

Query: 2115 ADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYN 1936
             ++     E  + + + EV YEDEV+K+LDGLG RYTDWPG  PLPVDAD+LP  +PGY 
Sbjct: 404  VNL-ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQ 462

Query: 1935 PPFRILPYGVRSTVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKI 1756
            PPFR+LPYGVRST+  KEAT L+RLARVLPPHFALGRSRQ QGLA AM+KLWE+SSIAKI
Sbjct: 463  PPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 522

Query: 1755 ALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKT 1576
            ALKRGVQLTTSERM EDIKKLTGG LLSRNKDFLVFYRGK+FLSP+V EAL E+ERLAK+
Sbjct: 523  ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKS 582

Query: 1575 LQDEEEQARLRASALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEI 1396
            LQDEEEQARLRASA V P  E  ++SGTAGTL+ETLDA++RWGK+LD+ HKE ++REAE+
Sbjct: 583  LQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEV 642

Query: 1395 LRHASLVRKLEKKLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGL 1216
             RHA LV+KLEKKL  AERK++RAERALSKVEESL PAER ADP+SITDEERFMFRKLGL
Sbjct: 643  RRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGL 702

Query: 1215 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVS 1036
            RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK K+FD+ + IAL+LE+ESGGVLVS
Sbjct: 703  RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVS 762

Query: 1035 VDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVG 856
            VDK+SKGYA++V+RGK+Y+RP  LRPKNLLTKRKALARSIELQR+EALL H++ ++   G
Sbjct: 763  VDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAG 822

Query: 855  QLRSEIEQMARVKEHGDEELYNRLDSAYPSXXXXXXXXXXXXEAYIETYNSTNXXXXXXX 676
            +LRSEIEQM  VK  GDE+LY++LDSAY +            EAY+E Y   N       
Sbjct: 823  RLRSEIEQMNSVKGTGDEQLYDKLDSAYAT--EDDDSEDEGDEAYLEMYAGGN-----DN 875

Query: 675  XXXXSNGQHHLKSIS---LDIEEDASETE 598
                 N  H+L+  S      ++  SETE
Sbjct: 876  EDEIDNSTHNLEMESDFPYHAQDQESETE 904


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521988|gb|ESR33355.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  976 bits (2523), Expect = 0.0
 Identities = 549/933 (58%), Positives = 654/933 (70%), Gaps = 52/933 (5%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKS-TINS 3064
            MALVP+ QF P T  F DSFQSS +K H  T   FFR G+SIP KN    +   S + + 
Sbjct: 1    MALVPSRQFCPATAIF-DSFQSSFSKFH-GTHFHFFRCGHSIPLKNHFFYQNFSSNSAHE 58

Query: 3063 DSTPQQNPQKRSN--FDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNE-HKQNK 2893
             +TP++     +N  F    K+      S ++               WL KWN+ +K N+
Sbjct: 59   KNTPRKICSFSTNNFFSQHDKDDNANLCSSSS---------------WLVKWNKPNKYNR 103

Query: 2892 LKGTPQVVVNYRNXXXXXXXXXXXXXXXXS-----------TMERIVEKLKKFGYVXXXX 2746
            LK  PQ  VNYR                             TM +IVEKLKKFGYV    
Sbjct: 104  LK-PPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGD 162

Query: 2745 XXXXXXXXXXKG--------SIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRF 2590
                      +G        SIEDIFYVEEG+LPNARGGFS++SP G      S+GEV+F
Sbjct: 163  GDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKF 222

Query: 2589 PWEKKEVKEEAA-------RQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTG 2431
            PWEK+  KEE A       R+ SR+S+AELTLPESELRRL+NLT + K+K RI G+G+T 
Sbjct: 223  PWEKR--KEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 280

Query: 2430 EVVEKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYE 2251
             VV+ IHEKWK+SE+VRLKIEGA ALNMKRMHEILERKTGGLVIWRSGT+V+LYRGV YE
Sbjct: 281  AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 340

Query: 2250 VPSEKLQKRLYNKNDIPHDPSLLTTDANI--------------SQLSEDNPSS-----TV 2128
            VPS +L KR+Y +N++P       TD  I              +  +  +PS+      V
Sbjct: 341  VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 400

Query: 2127 HTAQADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFI 1948
            H  Q ++     E  + + + EV YEDEV+K+LDGLG RYTDWPG  PLPVDAD+LP  +
Sbjct: 401  HVTQVNL-ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIV 459

Query: 1947 PGYNPPFRILPYGVRSTVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSS 1768
            PGY PPFR+LPYGVRST+  KEAT L+RLARVLPPHFALGRSRQ QGLA AM+KLWE+SS
Sbjct: 460  PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 519

Query: 1767 IAKIALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKER 1588
            IAKIALKRGVQLTTSERM EDIKKLTGG LLSRNKDFLVFYRGK+FLSP+V EAL E+ER
Sbjct: 520  IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERER 579

Query: 1587 LAKTLQDEEEQARLRASALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMR 1408
            LAK+LQDEEEQARLRASA V P  E  ++SGTAGTL+ETLDA++RWGK+LD+ HKE ++R
Sbjct: 580  LAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVR 639

Query: 1407 EAEILRHASLVRKLEKKLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFR 1228
            EAE+ RHA LV+KLEKKL  AERK++RAERALSKVEESL PAER ADP+SIT+EERFMFR
Sbjct: 640  EAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITNEERFMFR 699

Query: 1227 KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGG 1048
            KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK K+FD+ + IAL+LE+ESGG
Sbjct: 700  KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGG 759

Query: 1047 VLVSVDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQ 868
            VLVSVDK+SKGYA++V+RGK+Y+RP  LRPKNLLTKRKALARSIELQR+EALL H++ ++
Sbjct: 760  VLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 819

Query: 867  KRVGQLRSEIEQMARVKEHGDEELYNRLDSAYPSXXXXXXXXXXXXEAYIETYNSTNXXX 688
               G+LRSEIEQM  VK  GDE+LY++LDSAY +            EAY+E Y   N   
Sbjct: 820  SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT--EDDDSEDEGDEAYLEMYAGGN--- 874

Query: 687  XXXXXXXXSNGQHHLKSIS---LDIEEDASETE 598
                     N  H+L+  S      ++  SETE
Sbjct: 875  --DNEDEIDNSTHNLEMESDFPYHAQDQESETE 905


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521987|gb|ESR33354.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score =  975 bits (2520), Expect = 0.0
 Identities = 535/872 (61%), Positives = 634/872 (72%), Gaps = 49/872 (5%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKS-TINS 3064
            MALVP+ QF P T  F DSFQSS +K H  T   FFR G+SIP KN    +   S + + 
Sbjct: 1    MALVPSRQFCPATAIF-DSFQSSFSKFH-GTHFHFFRCGHSIPLKNHFFYQNFSSNSAHE 58

Query: 3063 DSTPQQNPQKRSN--FDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNE-HKQNK 2893
             +TP++     +N  F    K+      S ++               WL KWN+ +K N+
Sbjct: 59   KNTPRKICSFSTNNFFSQHDKDDNANLCSSSS---------------WLVKWNKPNKYNR 103

Query: 2892 LKGTPQVVVNYRNXXXXXXXXXXXXXXXXS-----------TMERIVEKLKKFGYVXXXX 2746
            LK  PQ  VNYR                             TM +IVEKLKKFGYV    
Sbjct: 104  LK-PPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGD 162

Query: 2745 XXXXXXXXXXKG--------SIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRF 2590
                      +G        SIEDIFYVEEG+LPNARGGFS++SP G      S+GEV+F
Sbjct: 163  GDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKF 222

Query: 2589 PWEKKEVKEEAA-------RQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTG 2431
            PWEK+  KEE A       R+ SR+S+AELTLPESELRRL+NLT + K+K RI G+G+T 
Sbjct: 223  PWEKR--KEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 280

Query: 2430 EVVEKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYE 2251
             VV+ IHEKWK+SE+VRLKIEGA ALNMKRMHEILERKTGGLVIWRSGT+V+LYRGV YE
Sbjct: 281  AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 340

Query: 2250 VPSEKLQKRLYNKNDIPHDPSLLTTDANI--------------SQLSEDNPSS-----TV 2128
            VPS +L KR+Y +N++P       TD  I              +  +  +PS+      V
Sbjct: 341  VPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNV 400

Query: 2127 HTAQADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFI 1948
            H  Q ++     E  + + + EV YEDEV+K+LDGLG RYTDWPG  PLPVDAD+LP  +
Sbjct: 401  HVTQVNL-ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIV 459

Query: 1947 PGYNPPFRILPYGVRSTVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSS 1768
            PGY PPFR+LPYGVRST+  KEAT L+RLARVLPPHFALGRSRQ QGLA AM+KLWE+SS
Sbjct: 460  PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 519

Query: 1767 IAKIALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKER 1588
            IAKIALKRGVQLTTSERM EDIKKLTGG LLSRNKDFLVFYRGK+FLSP+V EAL E+ER
Sbjct: 520  IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERER 579

Query: 1587 LAKTLQDEEEQARLRASALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMR 1408
            LAK+LQDEEEQARLRASA V P  E  ++SGTAGTL+ETLDA++RWGK+LD+ HKE ++R
Sbjct: 580  LAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVR 639

Query: 1407 EAEILRHASLVRKLEKKLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFR 1228
            EAE+ RHA LV+KLEKKL  AERK++RAERALSKVEESL PAER ADP+SIT+EERFMFR
Sbjct: 640  EAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITNEERFMFR 699

Query: 1227 KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGG 1048
            KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK K+FD+ + IAL+LE+ESGG
Sbjct: 700  KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGG 759

Query: 1047 VLVSVDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQ 868
            VLVSVDK+SKGYA++V+RGK+Y+RP  LRPKNLLTKRKALARSIELQR+EALL H++ ++
Sbjct: 760  VLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 819

Query: 867  KRVGQLRSEIEQMARVKEHGDEELYNRLDSAY 772
               G+LRSEIEQM  VK  GDE+LY++LDSAY
Sbjct: 820  SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 851


>ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 852

 Score =  975 bits (2520), Expect = 0.0
 Identities = 537/908 (59%), Positives = 644/908 (70%), Gaps = 8/908 (0%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            M LVP+ Q YP +       +SS++K H  T    FRY  SIPFK Q    T +  I S 
Sbjct: 1    MTLVPSRQLYPTSL-----LESSLSKFH-GTHFHLFRYS-SIPFKKQSFHAT-QYFITSS 52

Query: 3060 STPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNKLKGT 2881
             TP+QNP ++ N                 L             SW+D+WN+ ++      
Sbjct: 53   LTPEQNPPRKLNL----------------LICQYKPTKNLSSCSWIDRWNDSRKQHGPRR 96

Query: 2880 PQVVVNYRNXXXXXXXXXXXXXXXXSTMERIVEKLKKFGYVXXXXXXXXXXXXXXK---G 2710
            P+ V++Y++                 TM++IVEKLKKFGY+                  G
Sbjct: 97   PRAVLDYQSNESGNLSSDGNDGGS--TMDKIVEKLKKFGYIAEDKNEGRGEVRERVIEKG 154

Query: 2709 SIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNG-EVRFPWEKKEVKEE----AARQK 2545
            S+EDIFYVEEG+LPN+RGGFS  SP G E+VF   G EVRFPWEK   +E+    + R++
Sbjct: 155  SVEDIFYVEEGMLPNSRGGFSGVSPLGTEDVFGDGGGEVRFPWEKPREREKEEGGSIRRR 214

Query: 2544 SRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSEVVRLKIEG 2365
            SR+S+AELTLPESELRRL+NLT + K+K +IGG+GVT  VVE IHE+WK++E+VRLKIEG
Sbjct: 215  SRTSLAELTLPESELRRLRNLTFQKKHKTKIGGAGVTQAVVEMIHERWKTAEIVRLKIEG 274

Query: 2364 ASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKNDIPHDPSL 2185
              ALNMKRMHEILERKTGGLV+WRSGTS++LYRGV YEVPS +L K+++ +N+I      
Sbjct: 275  PPALNMKRMHEILERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKQIFKRNEISSTSLP 334

Query: 2184 LTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRYT 2005
               D ++++       S V T      N  +E  D E LPEV YEDEVD++LD +G R+ 
Sbjct: 335  TVADKSVAEPYVCATYSNVKTPLEMSENASQETEDTEQLPEVKYEDEVDELLDSIGPRFK 394

Query: 2004 DWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARVLPPHFALGR 1825
            DWPG  PLPVDAD+LP  +PG+ PPFRILPYGVRST+G KEAT+L+RLARVLPPHFALGR
Sbjct: 395  DWPGCDPLPVDADMLPGIVPGFQPPFRILPYGVRSTLGLKEATSLRRLARVLPPHFALGR 454

Query: 1824 SRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFY 1645
            +RQ QGLA AM KLWERS IAKIALKRGVQLTTSERMAEDIKKLTGG+LLSRNKDFLVFY
Sbjct: 455  NRQLQGLAVAMSKLWERSLIAKIALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFY 514

Query: 1644 RGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDESGTAGTLEETLD 1465
            RGK+FLS EV EAL+E+ERLAK+LQDEEEQARLRASA+V P  E     GTAGTL ETLD
Sbjct: 515  RGKNFLSAEVTEALVERERLAKSLQDEEEQARLRASAMVMPSIEPAQHFGTAGTLGETLD 574

Query: 1464 ADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERALSKVEESLNP 1285
            ADA+WGK+LD  HKE+V +EA ILRHA LVRKLE+KL  AERK+M AE+ALSKVEESL P
Sbjct: 575  ADAKWGKRLDVHHKEKVTQEAGILRHAKLVRKLEQKLAFAERKLMGAEQALSKVEESLKP 634

Query: 1284 AERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKA 1105
            +++ ADP+SITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVKI+V A
Sbjct: 635  SKQQADPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNA 694

Query: 1104 KSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKALA 925
            K+FD+V+ IAL+LE+ESGGVLVSVDKVSK YAIIV+RG +Y+RP  LRPKNLLTKRKALA
Sbjct: 695  KNFDQVKKIALALEAESGGVLVSVDKVSKKYAIIVYRGNDYQRPSMLRPKNLLTKRKALA 754

Query: 924  RSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSAYPSXXXXXXX 745
            RSIELQR+EALL HI+AVQ RV +LRSEIEQM  VK HGDE LYN+LDS YP+       
Sbjct: 755  RSIELQRQEALLKHIAAVQSRVDRLRSEIEQMDTVKHHGDEALYNKLDSCYPT---DYED 811

Query: 744  XXXXXEAYIETYNSTNXXXXXXXXXXXSNGQHHLKSISLDIEEDASETEHVLS*CIKCLN 565
                 +AY+ETY+S N                       D EED++ + H  S      N
Sbjct: 812  TEEEGDAYLETYSSKN-----------------------DGEEDSTSSVHSTS----LEN 844

Query: 564  GFTYEIPE 541
             F++  PE
Sbjct: 845  QFSFSFPE 852


>gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]
          Length = 856

 Score =  962 bits (2488), Expect = 0.0
 Identities = 526/865 (60%), Positives = 626/865 (72%), Gaps = 17/865 (1%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTT---FIDSFQSSVTKLHVTTRLKFFRYGYS-IPFKNQILCETHKST 3073
            M L+PT QF+P TTT   F+DSFQ+ ++K H    L F  Y  S  P K   L   +  T
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLP-LPFCSYDSSNFPLKTSTLYAANY-T 58

Query: 3072 INSDSTPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNK 2893
            + S+S   Q P+ ++        K   F S                  WLD WN+  +  
Sbjct: 59   VTSNSLFHQYPKSKTK---AFPTKDPTFRSN-----------------WLDSWNKTHKGF 98

Query: 2892 LKGTPQVVVNYRNXXXXXXXXXXXXXXXXS----TMERIVEKLKKFGYVXXXXXXXXXXX 2725
                P+ V NYR                      TME+IVEKLKKFGY+           
Sbjct: 99   GPKPPKTVFNYRKKGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGE 158

Query: 2724 XXXK-----GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEE 2560
               K     GSIEDIFYVEEG+LPN RGGFS++SP G ENVF S+GEVRFPWEK++  EE
Sbjct: 159  EEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEE 218

Query: 2559 ----AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSS 2392
                 AR+ S++S+AELTLPESELRRL+NLT R K+K+RI G+GVT EVV+ IHEKWK+ 
Sbjct: 219  EGGWTARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTE 278

Query: 2391 EVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNK 2212
            E+VRLKIEGA ALNMKRMHEILERKTGGLVIWRSGTSV+LYRGV YEVPS  L KR+Y +
Sbjct: 279  EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKR 338

Query: 2211 NDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEVDKM 2032
            N+     +L +       LS       V + QA+     + N D E LPE+ YEDEVDK+
Sbjct: 339  NET-FTYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKL 397

Query: 2031 LDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARV 1852
            L+GLG RYTDWPG  PLPVDADLLP  + GY PPFR+LPYGVRS++G KEAT+L+RLARV
Sbjct: 398  LEGLGPRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARV 457

Query: 1851 LPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLS 1672
            LPPHFA+GRSRQ QGLA AM+KLWE+SSIAKIALKRGVQLTTSERMAEDIKKLTGG+LLS
Sbjct: 458  LPPHFAIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLS 517

Query: 1671 RNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDESGT 1492
            RNKDFLVFYRGK+FLS +VAEAL+E+ERLAK+LQDEEEQARLRASA + P  E+ ++SG 
Sbjct: 518  RNKDFLVFYRGKNFLSADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGA 577

Query: 1491 AGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERAL 1312
            AGTL ETLDADARWGK+LD  HKE+VM+EAEILRHA+LVRKL+K L  A+RK+++AERAL
Sbjct: 578  AGTLGETLDADARWGKRLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERAL 637

Query: 1311 SKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 1132
            +KVE+ L PA+R ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYR
Sbjct: 638  TKVEDYLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 697

Query: 1131 ELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALRPKN 952
            ELVKII+KAK+FD+V+ +AL+LE+ESGGVLVSVD++SKGYAIIV+RGK+Y+RP  +RPKN
Sbjct: 698  ELVKIIMKAKTFDQVKKVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKN 757

Query: 951  LLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSAY 772
            LLTKR+ALARSIELQRRE                    +QM  ++E GDEE Y+RLDS+Y
Sbjct: 758  LLTKRRALARSIELQRRE--------------------DQMHSMEEQGDEEFYDRLDSSY 797

Query: 771  PSXXXXXXXXXXXXEAYIETYNSTN 697
            P+            EAY+ETY S N
Sbjct: 798  PT--DDDDTEEEGDEAYLETYESEN 820


>gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 878

 Score =  949 bits (2452), Expect = 0.0
 Identities = 521/865 (60%), Positives = 624/865 (72%), Gaps = 19/865 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MALVP+ QFYP  T+F DS           T +KFFRYG SI F+   L  T  S++NS 
Sbjct: 1    MALVPSRQFYP--TSFFDSLHG--------THIKFFRYGSSITFRKHRLYSTKYSSVNSS 50

Query: 3060 STPQQNPQKRSN-FDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNKLKG 2884
            S+ +QNP  + N F   ++N  W    +  L              W++KWNE  Q     
Sbjct: 51   SSSEQNPGGKYNKFFRTTQNNNWHNKYDDNLSSTS----------WIEKWNETHQQIRPK 100

Query: 2883 TPQVVVNYRNXXXXXXXXXXXXXXXXS-------TMERIVEKLKKFGY---VXXXXXXXX 2734
             P  V++YRN                        TMERIVEKLKKFGY   V        
Sbjct: 101  PPGAVLDYRNSESGNQPRSSYANRNGGDNNSGGSTMERIVEKLKKFGYMDDVGSEGKEDK 160

Query: 2733 XXXXXXKGSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNG-EVRFPWEKKEVKEE- 2560
                  KGS+EDIFYVEEG+LPN RGGFS  SP G E VF  NG EVRFPWEK + K E 
Sbjct: 161  GERVIEKGSVEDIFYVEEGMLPNPRGGFSPDSPLGVEGVFGGNGGEVRFPWEKPKEKVEK 220

Query: 2559 ---AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSE 2389
               + R++S++S+AELTLPESELRRL+NLT + K+K RIGG+GVT EVV+ IHE+WK+ E
Sbjct: 221  EGGSMRRRSKTSLAELTLPESELRRLRNLTFQKKHKTRIGGAGVTQEVVDMIHERWKTLE 280

Query: 2388 VVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKN 2209
            +VRLKIEGA ALNMKRMHEILERKTGGLV+WRSGTS++LYRGV Y+VPS +L+KRLY K 
Sbjct: 281  IVRLKIEGAPALNMKRMHEILERKTGGLVVWRSGTSLSLYRGVSYQVPSLELKKRLYKKP 340

Query: 2208 DIPHDPSLLTT-DANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEVDKM 2032
            +I    S+ T  D +   L++  P +   TA     +  +E  D E  PEV YEDE+DK+
Sbjct: 341  EIS---SIQTVGDKSTRDLAKFAPDTNTDTAIEKSESPSQEKKDVERSPEVKYEDEIDKI 397

Query: 2031 LDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARV 1852
            LDGLG RY DWPG    PVDAD+LPS +PGY PPFRILP+GVR ++G KEAT+L+RLARV
Sbjct: 398  LDGLGPRYEDWPGSDISPVDADMLPSIVPGYQPPFRILPFGVRPSLGPKEATSLRRLARV 457

Query: 1851 LPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLS 1672
            LPPHFA+GR+RQ QGLA AM+ LWE+S IAKIALKRGVQLTTSERM E+IKKLTGG+LLS
Sbjct: 458  LPPHFAVGRNRQLQGLAVAMINLWEKSLIAKIALKRGVQLTTSERMVEEIKKLTGGVLLS 517

Query: 1671 RNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTDESGT 1492
            RNKDFLVFYRGK+FLSPEV +ALLE+ERLAK+LQDEEEQARLRASA++ P  E+T++ G+
Sbjct: 518  RNKDFLVFYRGKNFLSPEVTKALLERERLAKSLQDEEEQARLRASAIIVPRTEVTEQPGS 577

Query: 1491 AGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERAL 1312
            AGTL ETLDA+A+WGK+LD  HK+ VMR+AEI RHA+LVRKLEKKL  +ERK+M+AERAL
Sbjct: 578  AGTLGETLDANAKWGKRLDNRHKKEVMRQAEISRHANLVRKLEKKLAFSERKLMKAERAL 637

Query: 1311 SKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 1132
            +KVE+ L PA R ADP+SIT+EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR
Sbjct: 638  AKVEQFLQPANRQADPESITNEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 697

Query: 1131 ELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVS-KGYAIIVFRGKNYERPPALRPK 955
            EL+KI+V A++FD+VR +AL+LE+ESGGVLVSVDK+S K +AIIVFRGK+Y+RP  LRPK
Sbjct: 698  ELIKIVVNARTFDQVRKVALALEAESGGVLVSVDKISKKKFAIIVFRGKDYQRPSTLRPK 757

Query: 954  NLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSA 775
            NLLTKRKALARSIELQR+E                    EQMA V++ GDE LY++LD  
Sbjct: 758  NLLTKRKALARSIELQRQE--------------------EQMAIVEDQGDEALYDKLDFD 797

Query: 774  YP-SXXXXXXXXXXXXEAYIETYNS 703
            YP S            EAY+ETY S
Sbjct: 798  YPTSDEEDEESEEEGDEAYLETYGS 822


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
            gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
          Length = 874

 Score =  943 bits (2438), Expect = 0.0
 Identities = 511/846 (60%), Positives = 608/846 (71%), Gaps = 21/846 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            MAL+  H      T F D+FQ+     H+       +YG S+ F+N+  C +        
Sbjct: 1    MALL--HSRLCHATNFFDTFQTEFHSSHI-----LLKYGSSVVFRNRSFCSSFYGLTT-- 51

Query: 3060 STPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNKLKGT 2881
                         D  S    +G  S                 SW+D+WNE  +      
Sbjct: 52   -------------DTFSNGISYGSLSSRTPVYRYNLRRNLSRVSWIDRWNETAKRNRPKP 98

Query: 2880 PQVVVNYRNXXXXXXXXXXXXXXXXS--------------TMERIVEKLKKFGYVXXXXX 2743
            P+ V++Y +                               TME+IV KLKKFGY+     
Sbjct: 99   PRAVLDYPSSDENEVSISSTGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYIDDENK 158

Query: 2742 XXXXXXXXXKGSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKE 2563
                     KGS+EDI Y+EEG+LPN RGGFS++SP GDEN+F S+GEVRFPWEK + KE
Sbjct: 159  EKGEERAIEKGSVEDILYIEEGMLPNTRGGFSKESPMGDENMFGSDGEVRFPWEKPKEKE 218

Query: 2562 EAARQKSR---SSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSS 2392
            +     +R   +S+A+LTLPE ELRRL+NLT + ++KM+IGG GVT  VV+ IHEKWKSS
Sbjct: 219  DTHGDSTRRGSASLAQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSS 278

Query: 2391 EVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVP-SEKLQKRLYN 2215
            E+VRLKI G  ALNMKRMHEILERKTGGLVIWRSGTS++LYRGV YE+P + +  KR+Y 
Sbjct: 279  EIVRLKILGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYK 338

Query: 2214 KNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQ---ADIVNDGKENNDAEPLPEVNYEDE 2044
            +N+I   P    T A+    SE +    V+  Q   A+   +G+  ++     +VNYEDE
Sbjct: 339  RNEITALPK---TGASTIAPSESSSHRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDE 395

Query: 2043 VDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKR 1864
            V+K+LDGLG RYTDWPG  PLPVDAD+LP  +P Y PPFRILPYGVRS++G KEATALKR
Sbjct: 396  VNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKR 455

Query: 1863 LARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGG 1684
            LAR LPPHFALGR+RQ QGLA AM KLWERS IAKIALKRGVQLTTSERMAE+IKKLTGG
Sbjct: 456  LARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGG 515

Query: 1683 ILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRELTD 1504
            +LLSRNKDFLVFYRGK FLSPEV EALLE+ERLAK+LQD+EEQARL+ASA V P  E T+
Sbjct: 516  MLLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDKEEQARLKASAFVVPI-EKTE 574

Query: 1503 ESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERKIMRA 1324
            +SGTAG+LEETLDADARWGK LD+ HKE VMREAE LRH  LVRKLE+KL  AERK+++A
Sbjct: 575  QSGTAGSLEETLDADARWGKALDDKHKENVMREAEQLRHTDLVRKLERKLAFAERKLVKA 634

Query: 1323 ERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 1144
            ER L+KVE  + PA+R A+PDSIT+EERFMFRKLGLRMKAFLLLGRR VFDGTVENMHLH
Sbjct: 635  ERTLAKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLH 694

Query: 1143 WKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPAL 964
            WKYRELVKI++KA SFD V++IAL LE+ESGGVLVS+DKVSKGYAIIV+RGK+Y+RP  L
Sbjct: 695  WKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLL 754

Query: 963  RPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRL 784
            RPKNLLTKRKALARSIELQR EALL HISA+Q +VG+L SEIEQM +VK+ GDE LYN L
Sbjct: 755  RPKNLLTKRKALARSIELQRHEALLKHISAMQSKVGKLNSEIEQMEKVKDQGDEVLYNTL 814

Query: 783  DSAYPS 766
            DSAYP+
Sbjct: 815  DSAYPT 820


>ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
            gi|223543652|gb|EEF45180.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 773

 Score =  940 bits (2430), Expect = 0.0
 Identities = 484/690 (70%), Positives = 574/690 (83%), Gaps = 12/690 (1%)
 Frame = -1

Query: 2799 MERIVEKLKKFGY----VXXXXXXXXXXXXXXKGSIEDIFYVEEGILPNARGGFSEKSPF 2632
            ME+IVEKLKK GY    V              KGS+EDIFYVEEG LPN+RGGFS++SP 
Sbjct: 1    MEKIVEKLKKHGYIDGNVDEKKKEKTLERVIQKGSVEDIFYVEEGNLPNSRGGFSKESPL 60

Query: 2631 GDENVFSSNGEVRFPWEK------KEVKEEAARQKSRSSMAELTLPESELRRLKNLTIRI 2470
            G E+VF SNGEVRFPWEK      +  K+  AR KSR+ +AELTLPESELRRL+NLT +I
Sbjct: 61   GVEDVFKSNGEVRFPWEKPKREELEHEKKWTARSKSRTQLAELTLPESELRRLRNLTYQI 120

Query: 2469 KNKMRIGGSGVTGEVVEKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRS 2290
            K+K+R+ G+GVT EVV+ IH++WK+SE+VR+K+EGA ALNM+RMHEILERKTGGLVIWRS
Sbjct: 121  KSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRS 180

Query: 2289 GTSVALYRGVGYEVPSEKLQKRLYNKNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQ-- 2116
            GTSV+LYRGV YE PS +L K++  +N++ ++ SL T    I   S+   SS ++     
Sbjct: 181  GTSVSLYRGVSYEDPSVQLNKQILKRNELSNN-SLSTATGIIRSPSKSAASSDLNMPHLN 239

Query: 2115 ADIVNDGKENNDAEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYN 1936
            +D   +G+E  + E   EV YEDEVDK+L+GLG RYTDW G  PLPVDAD+LP  IPGY 
Sbjct: 240  SDSTAEGEEKKEIEMETEVKYEDEVDKLLEGLGPRYTDWAGLDPLPVDADMLPGIIPGYQ 299

Query: 1935 PPFRILPYGVRSTVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKI 1756
            PPFRILPYGVRS++G KEAT+L+RLAR+LPPHFALGRSRQ QGLA AM+KLWE+SSIAKI
Sbjct: 300  PPFRILPYGVRSSLGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKI 359

Query: 1755 ALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKT 1576
            +LKRGVQLTTSERMAEDIKKLTGG+LLSRNKDFLVFYRGKDFLSPEV EAL+E+ERLA++
Sbjct: 360  SLKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVTEALVERERLAQS 419

Query: 1575 LQDEEEQARLRASALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEI 1396
            LQD+EEQARLRASAL     E  ++ GTAGTLEETLDADARWGK LD++H+E++MREAEI
Sbjct: 420  LQDKEEQARLRASALFVQTAETLEQPGTAGTLEETLDADARWGKCLDQNHREKIMREAEI 479

Query: 1395 LRHASLVRKLEKKLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGL 1216
             RHA+LVRKLE KL  AE+K+M+AERALSKVE  L PAER ADP+SITDEERFMFRKLGL
Sbjct: 480  ARHANLVRKLESKLAFAEKKLMKAERALSKVEVFLKPAERQADPESITDEERFMFRKLGL 539

Query: 1215 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVS 1036
            RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII+KAK+ ++V+ IAL+LE+ESGG+LVS
Sbjct: 540  RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVS 599

Query: 1035 VDKVSKGYAIIVFRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVG 856
            VD+VSKGYAIIVFRGK+Y+RP  LRP NLLTKRKALARSIE+QR EALL HISA+QK+V 
Sbjct: 600  VDRVSKGYAIIVFRGKDYQRPSKLRPGNLLTKRKALARSIEIQRSEALLKHISALQKKVD 659

Query: 855  QLRSEIEQMARVKEHGDEELYNRLDSAYPS 766
            ++R EI QM +VK+ GDEELY+RLD+ YP+
Sbjct: 660  KIRYEIAQMEKVKDQGDEELYDRLDATYPT 689


>ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max]
          Length = 835

 Score =  921 bits (2381), Expect = 0.0
 Identities = 487/763 (63%), Positives = 590/763 (77%), Gaps = 19/763 (2%)
 Frame = -1

Query: 2928 WLDKWNEHKQNKLKGTPQ-VVVNY-------RNXXXXXXXXXXXXXXXXSTMERIVEKLK 2773
            WL +WN+   N  +  P   V++Y       ++                STM+RIVEKLK
Sbjct: 64   WLKRWNDPTNNHARPKPPCAVLDYSENGHASKSGLASSDEEGGDGNTGGSTMDRIVEKLK 123

Query: 2772 KFGYVXXXXXXXXXXXXXXKGSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVR 2593
            KFGYV               GS+EDIFYVEEG+LPN+RGGFS +SP G  +  S + EVR
Sbjct: 124  KFGYVEDGIQNKERVIEK--GSVEDIFYVEEGMLPNSRGGFSSESPLGFGSFGSDDREVR 181

Query: 2592 FPWEKKEVKE----EAARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEV 2425
            FPWEK  V+E    ++ R +S++S+AELTLPESEL+RL  LT   K+K RIG SGVT  V
Sbjct: 182  FPWEKPVVEELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAV 241

Query: 2424 VEKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVP 2245
            V+KIHE+WK+SE+VRLK EG +ALNMKRMHEILERKTGGLVIWRSG SV+LYRGV YEVP
Sbjct: 242  VDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVP 301

Query: 2244 SEKLQKRLYNKNDIPHDPSLLTTDA-----NISQLSEDNPSSTVHTAQADIVNDGKENND 2080
            S +  K++Y K++  +   LL T +     N S ++  N  ++   A+ +  ND KE   
Sbjct: 302  SVQQNKKIYRKSE--NSSKLLPTPSYNSVGNPSDIAS-NSGTSAPLAKLESTNDEKER-- 356

Query: 2079 AEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRS 1900
             + LP+VNYE EVDK+LDGLG RYTDWPG  PLPVDAD+LP  +PGY PPFR+LP+GVR+
Sbjct: 357  -DYLPKVNYEHEVDKLLDGLGPRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRA 415

Query: 1899 TVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSE 1720
            T+G +EATAL+R+AR LPPHFALGR+RQ QGLA AM+KLWE SSIAK+ALKRGVQLTTSE
Sbjct: 416  TLGLREATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSE 475

Query: 1719 RMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRA 1540
            RMAE+IKKLTGGILLSRNKDFLVF+RGK+FLS +V +ALLE+ER+AK +QDEEEQARLRA
Sbjct: 476  RMAEEIKKLTGGILLSRNKDFLVFFRGKNFLSADVTQALLERERMAKVMQDEEEQARLRA 535

Query: 1539 SALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEK 1360
            S+L+ P    ++ S  AGTL ETLDADA+WGK LDE HK+++MRE E LRHA+LV+KLE+
Sbjct: 536  SSLLIPTNNTSELSAEAGTLGETLDADAKWGKTLDERHKQKIMREVEQLRHANLVKKLEQ 595

Query: 1359 KLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRG 1180
            KL  AERK+ RAE+AL KVE  L P+E  ADP+SITDEERFMFRKLGLRMKAFLLLGRRG
Sbjct: 596  KLSFAERKLRRAEKALMKVESFLKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRG 655

Query: 1179 VFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIV 1000
            VFDGT+ENMHLHWKYRELVKIIVKAK+F++V+ IAL+LE+ESGGVLVSVDKVSKGY++IV
Sbjct: 656  VFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIV 715

Query: 999  FRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARV 820
            +RGK+Y+RP  LRPKNLLTKRKALARSIELQR EAL+NHIS +Q +VG++RSEIEQM +V
Sbjct: 716  YRGKDYQRPSTLRPKNLLTKRKALARSIELQRHEALMNHISTLQSKVGRIRSEIEQMEKV 775

Query: 819  KEHGDEELYNRLDSAYPS--XXXXXXXXXXXXEAYIETYNSTN 697
            K+ GDE LY++LDSAYPS              EAY++TYNS N
Sbjct: 776  KDKGDEALYDKLDSAYPSDDENSEVEDGEQGDEAYLKTYNSEN 818


>ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cicer arietinum]
          Length = 838

 Score =  915 bits (2365), Expect = 0.0
 Identities = 506/848 (59%), Positives = 612/848 (72%), Gaps = 25/848 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTTFIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTINSD 3061
            M+LVPT Q +P    FIDSF +S    +    L+FF Y  +          T+K+   + 
Sbjct: 1    MSLVPTRQLHP----FIDSFHTSSPSFN---SLRFFTYNLT----------TYKTPSTNF 43

Query: 3060 STPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNE--HKQNKLK 2887
            +  +     R+ F   +                           WL  WN+   K N+ K
Sbjct: 44   TFKKYPILPRNTFSTHT---------------------------WLKHWNQPSSKHNRPK 76

Query: 2886 GTPQVVVNYRNXXXXXXXXXXXXXXXXS------TMERIVEKLKKFGYVXXXXXXXXXXX 2725
              P+ V+NYRN                       TM+RIVEKLKKFGY            
Sbjct: 77   -PPRAVLNYRNSGNGHSSKSHFSSSDDEDNNGGSTMDRIVEKLKKFGYDDDDDDEKKDHN 135

Query: 2724 XXXK----GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEE- 2560
               +    GS+EDIFYVEEGILPN +GGFS +SPFG     S  GEVRFPWEKK V ++ 
Sbjct: 136  TKERVIEKGSVEDIFYVEEGILPNTKGGFSSESPFGVGRFGSDGGEVRFPWEKKTVVDDE 195

Query: 2559 ------AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWK 2398
                    R+KS++S+AELTLPESEL+RL  LT   K+K RIGG GVT  VV+KIHE+WK
Sbjct: 196  EEEDRKGLRKKSKTSLAELTLPESELKRLLKLTFEKKHKTRIGGGGVTQAVVDKIHERWK 255

Query: 2397 SSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLY 2218
            +SE+VRLK EG +ALNMKRMHEILERKTGGLVIWRSG SV+LYRGV Y+ PS +  K+LY
Sbjct: 256  TSEIVRLKFEGDAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYKDPSIQHNKQLY 315

Query: 2217 NKNDIPHDPSLLTTDANI-----SQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNY 2053
             K++  +    L+  +N      S+L+ ++ ++T    + +  ND KE ++   LP++ Y
Sbjct: 316  RKSE--NSSKFLSKPSNNFAVKPSELTSNSETNT-SLEKLESTNDQKEKDN---LPKLTY 369

Query: 2052 EDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATA 1873
            EDEVDK+LDGLG RYTDWPG  PLPVDAD+LP  +PGY PPFR+LP+GVR T+G KEAT+
Sbjct: 370  EDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGLKEATS 429

Query: 1872 LKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKL 1693
            L+R+AR LPPHFALGR+RQ QGLAAAM+KLWE+SSIAK+ALKRGVQLTTSERMAE+IKKL
Sbjct: 430  LRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKL 489

Query: 1692 TGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLRASALVTPHRE 1513
            TGG +LSRNKDFLVF+RGK FLS +V EALLE+ER+AK +QDEEEQARLRAS+L+ P   
Sbjct: 490  TGGTILSRNKDFLVFFRGKSFLSSDVTEALLERERMAKAMQDEEEQARLRASSLLIPAIN 549

Query: 1512 LTDES-GTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASLVRKLEKKLFIAERK 1336
             ++ S   AGTL ETLDADA+WGK LDE HK++VMRE E LRHA+LVRKLE+KL +AERK
Sbjct: 550  TSELSVAEAGTLGETLDADAKWGKTLDERHKQKVMREVEQLRHANLVRKLEQKLSLAERK 609

Query: 1335 IMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 1156
            IMRAE+AL KVEESL P+E  ADP+SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN
Sbjct: 610  IMRAEKALMKVEESLKPSENTADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 669

Query: 1155 MHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYER 976
            MHLHWKYREL+KIIVKAK+F++V+ IAL+LE+ESGGVLVSVDKVSKGY+I+V+RGK+Y+R
Sbjct: 670  MHLHWKYRELIKIIVKAKNFEQVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQR 729

Query: 975  PPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEEL 796
            P  LRPKNLLTKRKALARSIELQR EAL  HIS +Q  + +LRSEIEQM +VKE GDE L
Sbjct: 730  PSTLRPKNLLTKRKALARSIELQRHEALSTHISTLQSNMEKLRSEIEQMEKVKEEGDEAL 789

Query: 795  YNRLDSAY 772
            YN+LDSAY
Sbjct: 790  YNKLDSAY 797


>ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
            truncatula] gi|355479830|gb|AES61033.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Medicago
            truncatula]
          Length = 838

 Score =  914 bits (2362), Expect = 0.0
 Identities = 486/742 (65%), Positives = 575/742 (77%), Gaps = 23/742 (3%)
 Frame = -1

Query: 2928 WLDKWNEHKQNKLKGTPQVVVNYR-----NXXXXXXXXXXXXXXXXSTMERIVEKLKKFG 2764
            WL +WNE  + K    P+ V+NY+     +                S M+RIVEKLKKFG
Sbjct: 66   WLKRWNEQNRPK---PPRGVLNYQGSGNGHSSKSDFDSSDDEDFGGSRMDRIVEKLKKFG 122

Query: 2763 YVXXXXXXXXXXXXXXKGSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNG-EVRFP 2587
            Y               KGS+EDIFYVEEG+LPN RGGFS +SPFG  +  S +G EVRFP
Sbjct: 123  YESDENENIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESPFGIGSYGSGDGGEVRFP 182

Query: 2586 WEKKEVKEE-----AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVV 2422
            WEK  V EE     ++R+KS++SMAELTLPESELRRL  LT   K+K RIGG GVT   V
Sbjct: 183  WEKPVVDEEVEERTSSRKKSKTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAV 242

Query: 2421 EKIHEKWKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPS 2242
            +KIHE+WK+SE+VRLK EG +ALNMKRMHEILE+KTGGLVIWRSG SV+LYRGV Y+ PS
Sbjct: 243  DKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPS 302

Query: 2241 EKLQKRLYNKN------------DIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVND 2098
             +  K+LY KN            D   +PS  TTD+      E   S+          ND
Sbjct: 303  IQQNKQLYRKNEKSLKFLSAPSDDFEVEPSEFTTDSETKTSLEKLEST----------ND 352

Query: 2097 GKENNDAEPLPEVNYEDEVDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRIL 1918
             KE  +   LP+++YEDEVDK+LDGLG RYTDWPG  PLPVDAD+LP  +PGY PPFR+L
Sbjct: 353  QKEKVN---LPKISYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVL 409

Query: 1917 PYGVRSTVGHKEATALKRLARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGV 1738
            P+GVR T+G KEAT+L+R+AR LPPHFALGR+RQ QGLAAAM+KLWE+SSIAK+ALKRGV
Sbjct: 410  PFGVRPTLGFKEATSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGV 469

Query: 1737 QLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEE 1558
            QLTTSERMAE+IKKLTGGI+LSRNKDFLVFYRGK+FLSP+V +ALLE+E++AK++QDEEE
Sbjct: 470  QLTTSERMAEEIKKLTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDEEE 529

Query: 1557 QARLRASALVTPHRELTDESGTAGTLEETLDADARWGKKLDEDHKERVMREAEILRHASL 1378
            QARLRAS+L+ P    ++ S  AGTL ETLDADA+WGK LDE H+++VMRE E LRHA++
Sbjct: 530  QARLRASSLILPAINTSELSAEAGTLGETLDADAKWGKTLDECHEQKVMREVEQLRHANI 589

Query: 1377 VRKLEKKLFIAERKIMRAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFL 1198
            VRKLE+KL +AERKI RAERAL KVE SL P+E  ADP+SITDEERFMFRKLGLRMKAFL
Sbjct: 590  VRKLEEKLSLAERKIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFL 649

Query: 1197 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSK 1018
            LLGRRGVFDGT+ENMHLHWKYRELVKIIVKA +F+ V+ IAL+LE+ESGGVLVSVDKVSK
Sbjct: 650  LLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSK 709

Query: 1017 GYAIIVFRGKNYERPPALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEI 838
            GY+I+V+RGK+Y+RP  LRPKNLLTKRKALARSIELQR EAL +HIS +Q +V +LRSEI
Sbjct: 710  GYSILVYRGKDYQRPSMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEI 769

Query: 837  EQMARVKEHGDEELYNRLDSAY 772
            EQ+ +VKE GDE LYNRLDSAY
Sbjct: 770  EQIEKVKEEGDEALYNRLDSAY 791


>ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
            lyrata] gi|297329237|gb|EFH59656.1| hypothetical protein
            ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata]
          Length = 873

 Score =  912 bits (2357), Expect = 0.0
 Identities = 501/841 (59%), Positives = 599/841 (71%), Gaps = 16/841 (1%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTT--FIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTIN 3067
            MA+ P+  FYP T T  F+ SFQSS          +F RY  SI   +   C   K  + 
Sbjct: 1    MAMKPSLHFYPTTVTKKFVYSFQSSFCS-------RFIRYSSSISIGS---C---KGVVF 47

Query: 3066 SDSTPQQNPQKRSNFDGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNKLK 2887
            S S   Q P +R +F     N  W                       L+ WN  ++    
Sbjct: 48   S-SRNYQIPSRRFSFSRDGNNGEW-----------------------LENWNRIQKRNQP 83

Query: 2886 GTPQVVVNYRNXXXXXXXXXXXXXXXXS-TMERIVEKLKKFGYVXXXXXXXXXXXXXXK- 2713
              P+VVVNYR                   TME+IVEKLKK+GY+              + 
Sbjct: 84   KPPKVVVNYRKEGGIVSGDDNRSRDGEGSTMEKIVEKLKKYGYMEKGEEVQNKEIEQERR 143

Query: 2712 ---GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKEE------ 2560
               GS+EDIFYVEEG LPN RGGF+E+S  G ++VF SNGEV FPWEK   KE+      
Sbjct: 144  IEKGSVEDIFYVEEGNLPNTRGGFTEESLLGRDDVFGSNGEVGFPWEKMSAKEKKELEAE 203

Query: 2559 -AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEKWKSSEVV 2383
              A++++R S+AE+TLPESELRRL+NLT R  +KMRI G+GVT   V+ I EKWKS+E+V
Sbjct: 204  WTAKKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGAGVTQVAVDAIKEKWKSAEIV 263

Query: 2382 RLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKRLYNKNDI 2203
            RLKIEGASALNM++MHEILE+KTGGLVIWRSGTS++LYRGV YE+PS K  K+   + + 
Sbjct: 264  RLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREET 321

Query: 2202 PHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDEVDKMLDG 2023
            P  PS L     +     DN    VH  Q + V    E  D    P+V YEDE+D++LDG
Sbjct: 322  P--PSSLPETTTMV----DNSDGKVHLPQLEQVTTSVEKKDQTSQPDVEYEDEIDELLDG 375

Query: 2022 LGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKRLARVLPP 1843
            LG R+ DWPG  PLPVDADLLP  IPGY PPFR+LPYGVRS++G KEATAL+RLAR +PP
Sbjct: 376  LGPRFMDWPGDNPLPVDADLLPGAIPGYEPPFRVLPYGVRSSLGPKEATALRRLARSIPP 435

Query: 1842 HFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGGILLSRNK 1663
            HFALGRSRQ QGLA AMV+LWE+S +AKIA+KRGVQ TTSERMAED+KKLTGGILLSRNK
Sbjct: 436  HFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGILLSRNK 495

Query: 1662 DFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLR-ASALVTPHRELTDESGTAG 1486
            DFLVFYRGK+FLS EVA+AL+E+ER  +TLQDEEEQARLR +SAL+ P  E   +  +AG
Sbjct: 496  DFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPCIEPPKKLVSAG 555

Query: 1485 TLEETLDADARWGKKLDED-HKERVMREAEILRHASLVRKLEKKLFIAERKIMRAERALS 1309
            TL ETLDA  +WGK LD+D H + V +E EILRH +LVRKLE+KL  AERK+++AER L+
Sbjct: 556  TLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLA 615

Query: 1308 KVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 1129
            KVEE L PAE+  DPDSITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRE
Sbjct: 616  KVEECLKPAEQREDPDSITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRE 675

Query: 1128 LVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPPALRPKNL 949
            LVKIIVKAK+FD V+ +AL+LE+ESGG+LVS+DKV+KGYAIIV+RGK+Y+RP  LRPKNL
Sbjct: 676  LVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNL 735

Query: 948  LTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYNRLDSAYP 769
            LTKRKALARSIELQRRE LL HIS +Q +  QLR+EIEQM +V + GDEELYN+LD AY 
Sbjct: 736  LTKRKALARSIELQRREGLLKHISTMQAKAEQLRAEIEQMEKVTDKGDEELYNKLDMAYA 795

Query: 768  S 766
            S
Sbjct: 796  S 796


>ref|XP_006300008.1| hypothetical protein CARUB_v10016231mg [Capsella rubella]
            gi|482568717|gb|EOA32906.1| hypothetical protein
            CARUB_v10016231mg [Capsella rubella]
          Length = 884

 Score =  888 bits (2295), Expect = 0.0
 Identities = 488/848 (57%), Positives = 599/848 (70%), Gaps = 23/848 (2%)
 Frame = -1

Query: 3240 MALVPTHQFYPRTTT--FIDSFQSSVTKLHVTTRLKFFRYGYSIPFKNQILCETHKSTIN 3067
            MA+ P+  F P T T  F+ SFQSS          +F RY  SI   +   C+    +  
Sbjct: 1    MAMKPSLHFCPTTVTKKFVYSFQSSFC-------FRFLRYSSSISLGS---CKGVAFSSR 50

Query: 3066 SDSTPQQNPQKRSNF--DGGSKNKRWGFASEAALXXXXXXXXXXXXXSWLDKWNEHKQNK 2893
            +D    Q   +R +F  DGG+                           WL+ WN  ++  
Sbjct: 51   ND----QISSRRFSFSRDGGNGE-------------------------WLENWNRVQKRN 81

Query: 2892 LKGTPQVVVNYR-----NXXXXXXXXXXXXXXXXSTMERIVEKLKKFGYVXXXXXXXXXX 2728
                P+VVVNYR     +                STME+IVEKLKK+GY+          
Sbjct: 82   QPKPPKVVVNYRKEGRFSGSGLVSGGDSSRDGDGSTMEKIVEKLKKYGYMENDKEGQKNQ 141

Query: 2727 XXXXK-----GSIEDIFYVEEGILPNARGGFSEKSPFGDENVFSSNGEVRFPWEKKEVKE 2563
                +     GS+ED+F+VEEG+LPN RGGF+E+S  G +N+F  +GEV FPWEK   KE
Sbjct: 142  GIEQERRVEKGSVEDVFFVEEGVLPNTRGGFTEESLLGRDNMFGGDGEVGFPWEKISAKE 201

Query: 2562 E-------AARQKSRSSMAELTLPESELRRLKNLTIRIKNKMRIGGSGVTGEVVEKIHEK 2404
            +        A++++R S+AE+TLPESELRRL+NLT R  +KMRI G+GVT   V+ I EK
Sbjct: 202  KKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGAGVTQVAVDAIKEK 261

Query: 2403 WKSSEVVRLKIEGASALNMKRMHEILERKTGGLVIWRSGTSVALYRGVGYEVPSEKLQKR 2224
            WKS+E+VRLKIEGASALNM++MHEILE+KTGGLVIWRSGTS++LYRGV YE+PS K  K+
Sbjct: 262  WKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ 321

Query: 2223 LYNKNDIPHDPSLLTTDANISQLSEDNPSSTVHTAQADIVNDGKENNDAEPLPEVNYEDE 2044
               + + P  P+ L      + +  DN    VH  Q +      E  D    PEV YEDE
Sbjct: 322  --RREETP--PTTLPE----TSIMVDNSDEKVHLPQLEQEPTNAEKKDQTSRPEVEYEDE 373

Query: 2043 VDKMLDGLGTRYTDWPGPGPLPVDADLLPSFIPGYNPPFRILPYGVRSTVGHKEATALKR 1864
            +D++LDGLG R+ DWPG  PLPVDADLLP  IPGY PPFRILPYGV+S++G KEATAL+R
Sbjct: 374  IDELLDGLGPRFMDWPGDNPLPVDADLLPGAIPGYEPPFRILPYGVKSSLGPKEATALRR 433

Query: 1863 LARVLPPHFALGRSRQHQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGG 1684
            LAR +PPHFALGRSRQ QGLA AM++LWE+S +AKIA+KRGVQ TTSERMAED+KKLTGG
Sbjct: 434  LARSIPPHFALGRSRQLQGLATAMIRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGG 493

Query: 1683 ILLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEQARLR-ASALVTPHRELT 1507
            ILLSRNKD+LVFYRGK+FLS EVA+AL+E+ER A+TLQDEEEQARLR +SAL+ P  E  
Sbjct: 494  ILLSRNKDYLVFYRGKNFLSREVADALVEQERFARTLQDEEEQARLRGSSALIVPCIEPA 553

Query: 1506 DESGTAGTLEETLDADARWGKKLDED-HKERVMREAEILRHASLVRKLEKKLFIAERKIM 1330
             +  +AGTL ETLDA  +WGK LD+D H + V +E EILRH +LV KLE+KL  AERK++
Sbjct: 554  KKLVSAGTLGETLDATGKWGKNLDDDDHTDEVKQEVEILRHENLVMKLERKLAFAERKLL 613

Query: 1329 RAERALSKVEESLNPAERAADPDSITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMH 1150
            +AER L+KVE  L P E+  DP+SITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMH
Sbjct: 614  KAERGLAKVEACLKPVEQRDDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMH 673

Query: 1149 LHWKYRELVKIIVKAKSFDKVRSIALSLESESGGVLVSVDKVSKGYAIIVFRGKNYERPP 970
            LHWKYRELVKIIVKAK+FD VR +AL+LE+ESGG+LVS+DKV+KGYAIIV+RGK+Y+RP 
Sbjct: 674  LHWKYRELVKIIVKAKTFDGVRKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPT 733

Query: 969  ALRPKNLLTKRKALARSIELQRREALLNHISAVQKRVGQLRSEIEQMARVKEHGDEELYN 790
             LRPKNLLTKRKALARSIELQRRE LL HIS +Q +  QLR+EI+QM +V + GDEELYN
Sbjct: 734  MLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAEQLRAEIDQMGKVTDKGDEELYN 793

Query: 789  RLDSAYPS 766
            +L+  Y S
Sbjct: 794  KLNMVYAS 801