BLASTX nr result
ID: Catharanthus23_contig00005567
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00005567
(827 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006354580.1| PREDICTED: DNA-directed RNA polymerases II, ... 159 1e-36
ref|XP_004229520.1| PREDICTED: probable DNA-directed RNA polymer... 157 6e-36
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 150 7e-34
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 150 7e-34
ref|XP_002319223.1| hypothetical protein POPTR_0013s06920g [Popu... 145 2e-32
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 142 1e-31
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 141 2e-31
ref|XP_004966137.1| PREDICTED: DNA-directed RNA polymerases I, I... 141 3e-31
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 140 4e-31
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 140 4e-31
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 140 5e-31
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I... 140 7e-31
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S... 139 2e-30
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g... 138 2e-30
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 138 2e-30
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi... 138 2e-30
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao] 137 4e-30
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun... 137 4e-30
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 137 5e-30
ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer... 137 6e-30
>ref|XP_006354580.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Solanum tuberosum]
gi|565376162|ref|XP_006354581.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Solanum tuberosum]
Length = 144
Score = 159 bits (401), Expect = 1e-36
Identities = 82/144 (56%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M +H DEII V +D +GKKYDKVSRI+A + G +QLD++SE+YPM+ KE YRM++
Sbjct: 1 MDAFHFDEIIKVVKVDADGKKYDKVSRIEAESSDGASSIQLDINSELYPMKRKELYRMVI 60
Query: 382 SETLSLDGSA--SYPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLM 555
S TL ++GSA SYP + KSL DKFEY++HGL+YK+S E S A+ KV ++SFGGLQLM
Sbjct: 61 STTL-MEGSAVTSYPP-EGKSLLDKFEYIVHGLVYKVSMEGSGADKKVVVYVSFGGLQLM 118
Query: 556 VKAPYSKMIRFRVDQRLFLLLRKM 627
+K+ K+ +F++DQ+LFLLLRKM
Sbjct: 119 LKSDALKVQKFKLDQKLFLLLRKM 142
>ref|XP_004229520.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Solanum lycopersicum]
Length = 144
Score = 157 bits (396), Expect = 6e-36
Identities = 81/144 (56%), Positives = 110/144 (76%), Gaps = 2/144 (1%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M +H DEII V +D +GKKY+KVSRI+A + G +QLD++SE+YPM+ KE YRM++
Sbjct: 1 MDAFHFDEIIKVVKVDADGKKYEKVSRIEAESSDGATSIQLDINSELYPMKRKELYRMVI 60
Query: 382 SETLSLDGSA--SYPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLM 555
S TL ++GSA SYP + KSL DKFEY++HGL+YK+S E S A+ KV ++SFGGLQLM
Sbjct: 61 STTL-MEGSAVTSYPP-EGKSLLDKFEYIVHGLVYKVSMEGSGADKKVVVYVSFGGLQLM 118
Query: 556 VKAPYSKMIRFRVDQRLFLLLRKM 627
+K+ K +F++DQ+LFLLLRKM
Sbjct: 119 LKSDALKTQKFKLDQKLFLLLRKM 142
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 150 bits (378), Expect = 7e-34
Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Frame = +1
Query: 7 LPPLIAAQTHLIARRAATGRAVPAQYSSPRTAPFLLH*QPIRHPAPPATVLSILCFLGAF 186
LPPL A T + P Q+S P A +P+ P PP
Sbjct: 211 LPPLSATYTRTQPCKN------PCQFSQPTPA---FPSRPLTPPPPPR------------ 249
Query: 187 LEDSEMAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEK 366
+M + ++I V +D +GKK+D+VSRI+AR+E ++YMQLDV +E+YPMRA ++
Sbjct: 250 ----KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDR 305
Query: 367 YRMLLSETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAE-TKVTAFIS 534
+ M+L+ TL+LDG+ Y + +K+LADKF+YVMHG LYKISE+ S + TKV + S
Sbjct: 306 FTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYAS 365
Query: 535 FGGLQLMVKAPYSKMIRFRVDQRLFLLLRKM 627
FGGL +M+K S F +DQRLFLL+RK+
Sbjct: 366 FGGLLMMLKGDPSSAASFELDQRLFLLIRKV 396
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 150 bits (378), Expect = 7e-34
Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Frame = +1
Query: 7 LPPLIAAQTHLIARRAATGRAVPAQYSSPRTAPFLLH*QPIRHPAPPATVLSILCFLGAF 186
LPPL A T + P Q+S P A +P+ P PP
Sbjct: 6 LPPLSATYTRTQPCKN------PCQFSQPTPA---FPSRPLTPPPPPR------------ 44
Query: 187 LEDSEMAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEK 366
+M + ++I V +D +GKK+D+VSRI+AR+E ++YMQLDV +E+YPMRA ++
Sbjct: 45 ----KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDR 100
Query: 367 YRMLLSETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAE-TKVTAFIS 534
+ M+L+ TL+LDG+ Y + +K+LADKF+YVMHG LYKISE+ S + TKV + S
Sbjct: 101 FTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYAS 160
Query: 535 FGGLQLMVKAPYSKMIRFRVDQRLFLLLRKM 627
FGGL +M+K S F +DQRLFLL+RK+
Sbjct: 161 FGGLLMMLKGDPSSAASFELDQRLFLLIRKV 191
>ref|XP_002319223.1| hypothetical protein POPTR_0013s06920g [Populus trichocarpa]
gi|118487468|gb|ABK95561.1| unknown [Populus
trichocarpa] gi|222857599|gb|EEE95146.1| hypothetical
protein POPTR_0013s06920g [Populus trichocarpa]
Length = 143
Score = 145 bits (366), Expect = 2e-32
Identities = 71/138 (51%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Frame = +1
Query: 223 EIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSLD 402
+ +++ ++ +GKKYDKVSRI AR+E G++YM LDVH+EIYP+ K +Y +LL+ETL+ D
Sbjct: 6 DFFVIEKLNPDGKKYDKVSRIVARSEKGDLYMVLDVHTEIYPIEEKSRYLVLLTETLNTD 65
Query: 403 GSASYP---EGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPYS 573
G+ P +GKQ S DKFEYV HG LYKI +E S A+ K+ +ISFGGLQL+++ S
Sbjct: 66 GTPVDPRNAQGKQPSKEDKFEYVTHGKLYKIDKEGSGADFKLEIYISFGGLQLLLRGSPS 125
Query: 574 KMIRFRVDQRLFLLLRKM 627
+ RF++D+ F+L+RKM
Sbjct: 126 SLARFQLDKNYFMLMRKM 143
>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Oryza brachyantha]
gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X3 [Oryza brachyantha]
gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X4
[Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X5 [Oryza brachyantha]
Length = 146
Score = 142 bits (358), Expect = 1e-31
Identities = 73/146 (50%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M + ++I V +D +GKK+D+VSRI+AR+E ++YMQLDV +E+YPMR +K+ M+L
Sbjct: 1 MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAE-TKVTAFISFGGLQ 549
+ TL+LDG+ Y + +K+LADK++YVMHG LYKISE+ S + TKV + SFGGL
Sbjct: 61 APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120
Query: 550 LMVKAPYSKMIRFRVDQRLFLLLRKM 627
+M+K S F +DQRLFLL+RK+
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 141 bits (356), Expect = 2e-31
Identities = 68/139 (48%), Positives = 101/139 (72%), Gaps = 3/139 (2%)
Frame = +1
Query: 220 DEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSL 399
++I +V+ ID +GKK+DKVSRI+A ++ ++YM LDV+SE+YPMR +K+ M L+ TL+L
Sbjct: 8 EDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNL 67
Query: 400 DGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPY 570
DG+ Y G +K+LADK+EY+MHG L+KI +E S K ++S+GGL +M+K
Sbjct: 68 DGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
Query: 571 SKMIRFRVDQRLFLLLRKM 627
S + F +DQRLFLL+RK+
Sbjct: 128 SYVSHFELDQRLFLLMRKL 146
>ref|XP_004966137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Setaria italica]
Length = 144
Score = 141 bits (355), Expect = 3e-31
Identities = 72/146 (49%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M Y DE V +D +GKK+DKV+R++A NE ++YMQLDV +EI+P+RA +K+ M++
Sbjct: 1 MVEYLFDENFSVSRLDPDGKKFDKVTRVEAHNE--QVYMQLDVATEIFPLRAGDKFNMVI 58
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKS-KAETKVTAFISFGGLQ 549
+ TL+LDG+ Y + +K+LADKF+YVMHG LYKIS++ S + TKV + SFGGL
Sbjct: 59 APTLNLDGTPDTGYYTQAGRKTLADKFDYVMHGKLYKISDDSSTSSSTKVEIYASFGGLL 118
Query: 550 LMVKAPYSKMIRFRVDQRLFLLLRKM 627
L+++ S F +DQRLFLL+RK+
Sbjct: 119 LLLRCDSSSAASFELDQRLFLLIRKL 144
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 140 bits (354), Expect = 4e-31
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 5/147 (3%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA + ++I V +D +GKK+D+VSRI+ARNE +YMQLDV +++YPM +K+ M+L
Sbjct: 1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEK--SKAETKVTAFISFGGL 546
TL+LDG+ + + +K+LADK+EYVMHG LYKISE+K S KV + SFGGL
Sbjct: 61 VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120
Query: 547 QLMVKAPYSKMIRFRVDQRLFLLLRKM 627
+M+K S F +DQRLFLL+RK+
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147
>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like isoform 1 [Solanum lycopersicum]
gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
isoform 2 [Solanum lycopersicum]
Length = 145
Score = 140 bits (354), Expect = 4e-31
Identities = 69/139 (49%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
Frame = +1
Query: 220 DEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSL 399
++I V D +GKK+D+V+RI+AR+E +++M LDV++EIYPMR K+K+ M+L+ TL+L
Sbjct: 7 EDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVLASTLNL 66
Query: 400 DGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPY 570
DG+ + +G +KSLADKFEYVMHG LY+ISEE S K F+SFGGL + ++
Sbjct: 67 DGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDP 126
Query: 571 SKMIRFRVDQRLFLLLRKM 627
S +F +DQ++FLL+RK+
Sbjct: 127 SIAAKFELDQKIFLLIRKV 145
>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Solanum tuberosum]
Length = 145
Score = 140 bits (353), Expect = 5e-31
Identities = 68/139 (48%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
Frame = +1
Query: 220 DEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSL 399
++I V D +GKK+D+V+RI+AR+E +++M LD+++EIYPMR K+K+ M+L+ TL+L
Sbjct: 7 EDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVLASTLNL 66
Query: 400 DGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPY 570
DG+ + +G +KSLADKFEYVMHG LY+ISEE S K F+SFGGL + ++
Sbjct: 67 DGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDP 126
Query: 571 SKMIRFRVDQRLFLLLRKM 627
S +F +DQ++FLL+RK+
Sbjct: 127 SIAAKFELDQKIFLLIRKV 145
>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3 isoform 2
[Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
protein product [Vitis vinifera]
Length = 145
Score = 140 bits (352), Expect = 7e-31
Identities = 73/138 (52%), Positives = 98/138 (71%), Gaps = 3/138 (2%)
Frame = +1
Query: 223 EIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSLD 402
+I V ID +GKK+DKVSRI+A++E ++YMQLDV++EIYPM A EK+ M L+ TL LD
Sbjct: 8 DIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTLDLD 67
Query: 403 GSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPYS 573
G+ Y + +KSLADKFEYVMHG LYKISEE S K ++SFGGL +M+ +
Sbjct: 68 GTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDPA 127
Query: 574 KMIRFRVDQRLFLLLRKM 627
+ +DQR+FLL+RK+
Sbjct: 128 NTAKLDLDQRVFLLIRKV 145
>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein
SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 139 bits (349), Expect = 2e-30
Identities = 67/145 (46%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M+ + ++ +V +D +GKK+D+VSR++AR+E +YMQLDV +++YPM+ EK+ M+L
Sbjct: 1 MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQL 552
+ TL+LDG+ Y + +K+LAD +EYVMHG LYKISE+ S KV + SFGGL +
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120
Query: 553 MVKAPYSKMIRFRVDQRLFLLLRKM 627
+++ S F +DQRLFLL+RK+
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145
>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase
[Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 148
Score = 138 bits (348), Expect = 2e-30
Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 6/148 (4%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA + ++I V +D +GKK+D+VSRI+AR++ ++YMQLDV +++YPM +++ M+L
Sbjct: 1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60
Query: 382 SETLSLDG---SASYPEGKQKSLADKFEYVMHGLLYKISEEKSKAE---TKVTAFISFGG 543
TL+LDG SA + + +K+LADK+EYVMHG LYKISE+K ++ KV + SFGG
Sbjct: 61 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120
Query: 544 LQLMVKAPYSKMIRFRVDQRLFLLLRKM 627
L +M+K S F +DQRLFLL+RK+
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148
>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein
SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 138 bits (348), Expect = 2e-30
Identities = 68/145 (46%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
M+ + ++ +V +D +GKK+DKVSR++AR+E +YMQLDV +++YP+RA EK+ M+L
Sbjct: 1 MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQL 552
+ TL+LDG+ Y + +K+LAD +EYVM G LYKISE+ S KV + SFGGL +
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120
Query: 553 MVKAPYSKMIRFRVDQRLFLLLRKM 627
+++ S F +DQRLFLL+RK+
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145
>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 138 bits (348), Expect = 2e-30
Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 6/148 (4%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA + ++I V +D +GKK+D+VSRI+AR++ ++YMQLDV +++YPM +++ M+L
Sbjct: 68 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127
Query: 382 SETLSLDG---SASYPEGKQKSLADKFEYVMHGLLYKISEEKSKAE---TKVTAFISFGG 543
TL+LDG SA + + +K+LADK+EYVMHG LYKISE+K ++ KV + SFGG
Sbjct: 128 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 187
Query: 544 LQLMVKAPYSKMIRFRVDQRLFLLLRKM 627
L +M+K S F +DQRLFLL+RK+
Sbjct: 188 LLVMLKGDPSSAANFELDQRLFLLMRKV 215
>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
Length = 145
Score = 137 bits (346), Expect = 4e-30
Identities = 66/138 (47%), Positives = 101/138 (73%), Gaps = 2/138 (1%)
Frame = +1
Query: 220 DEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLLSETLSL 399
++I +V +D +GKK+DKV+RI+AR++ +++M LDV+SEIYPM +K+ M L+ TL+L
Sbjct: 8 EDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHTLNL 67
Query: 400 DGS--ASYPEGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQLMVKAPYS 573
DG+ Y +KSLADK+EYVMHG LYK+S++ S K ++S+GGL +M++ S
Sbjct: 68 DGTPDTGYYTPGRKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLRGEAS 127
Query: 574 KMIRFRVDQRLFLLLRKM 627
+ +F +DQRLFLL+RK+
Sbjct: 128 HVSQFELDQRLFLLMRKL 145
>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
[Aegilops tauschii]
Length = 220
Score = 137 bits (346), Expect = 4e-30
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 6/148 (4%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA + ++I V ID +GKK+D+V+RI+AR+E E+YMQLD+ +++YPM +K+ M+L
Sbjct: 1 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEE---KSKAETKVTAFISFGG 543
+ TL+LDG+ Y + +K+LADK++YVMHG LYKISE+ K K TKV + SFGG
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120
Query: 544 LQLMVKAPYSKMIRFRVDQRLFLLLRKM 627
L +++K S +DQ+LFLL+RK+
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148
>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 137 bits (345), Expect = 5e-30
Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA + ++I +V ID +GKK+D+V+RI+AR+E +YMQLDV + +YPM A +K+ M+L
Sbjct: 1 MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60
Query: 382 SETLSLDGSAS---YPEGKQKSLADKFEYVMHGLLYKISEEKSKAE-TKVTAFISFGGLQ 549
+ TL+LDG+ Y + +K+LADK++YVMHG LYKISE+ S + KV + SFGGL
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120
Query: 550 LMVKAPYSKMIRFRVDQRLFLLLRKM 627
+++K S +DQRLFLL+RK+
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146
>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
gi|449509097|ref|XP_004163492.1| PREDICTED: probable
DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cucumis sativus]
Length = 146
Score = 137 bits (344), Expect = 6e-30
Identities = 77/146 (52%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Frame = +1
Query: 202 MAPYHLDEIILVQNIDVEGKKYDKVSRIDARNEGGEIYMQLDVHSEIYPMRAKEKYRMLL 381
MA ++I V+ ++ +GKKYDKVSRI+AR+E ++M LDV++EIYP+ EK M+L
Sbjct: 1 MAGLLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVL 60
Query: 382 SETLSLDGS--ASYP--EGKQKSLADKFEYVMHGLLYKISEEKSKAETKVTAFISFGGLQ 549
S TL+ DGS SY EGK KSLADKFEY+MHG YK+S+E S ++ KV + SFGGLQ
Sbjct: 61 SPTLNYDGSPVTSYKDQEGK-KSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQ 119
Query: 550 LMVKAPYSKMIRFRVDQRLFLLLRKM 627
+++K +FRVDQ +FLLLRK+
Sbjct: 120 MLLKGDPIHCAKFRVDQNMFLLLRKL 145