BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00005431
         (1974 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   602   e-169
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   598   e-168
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              594   e-167
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   592   e-166
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   591   e-166
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   589   e-165
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   585   e-164
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   583   e-163
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   577   e-162
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   574   e-161
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   574   e-161
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   565   e-158
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           560   e-157
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   560   e-157
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   559   e-156
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   541   e-151
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   534   e-149
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     530   e-148
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   529   e-147
gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus...   528   e-147

>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  602 bits (1553), Expect = e-169
 Identities = 340/571 (59%), Positives = 411/571 (71%), Gaps = 14/571 (2%)
 Frame = -1

Query: 1821 MEAA-RNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTS 1645
            MEAA RN L SPP   S +T LRNCS      SVL LHE AAP L++ P AYL RH P S
Sbjct: 1    MEAAGRNLLSSPPTF-SQKTQLRNCS-----SSVLMLHEHAAPVLSSVPHAYLGRHVPAS 54

Query: 1644 VHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQLLH 1468
                +   E    L L K+++TS AT+DRRL++A +                + ++QLL 
Sbjct: 55   AIGPEQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLR 114

Query: 1467 MPGLWYLFRSLEAIQSVPM---------EAEKFSNVEAKSVIVLAKKALSASREATLLAE 1315
             PG  Y F         P+         + +K  N E  SV+ LA+KAL ASREA LLAE
Sbjct: 115  CPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAE 174

Query: 1314 QSKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGA-KTKFVVPERNY 1138
             SKL    LD +  P+ L++   D  L+  +TV+STR  ER+S++RGA K    V E N 
Sbjct: 175  DSKL----LDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNR 230

Query: 1137 SGKLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQN 964
            SG+  ++RK+ E+ D ND LR+F  GPETK LLTA EES+LI+KIQ  +KL+EVK++LQ 
Sbjct: 231  SGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQI 290

Query: 963  EFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPD 784
            +F HEP+ VEW EA G++ R+L+SQL SGK SREKLI+AN R+VVHIAKQYQGRGL+L D
Sbjct: 291  QFAHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 350

Query: 783  LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKV 604
            LLQEGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+YALLSKV
Sbjct: 351  LLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKV 410

Query: 603  KEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVT 424
            K+AK+ CIQQG+ +PTKE+IA CAGM+VE+L  LL   R PLSMQQ VWSDQDTTFQE+T
Sbjct: 411  KDAKKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEIT 470

Query: 423  ADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLS 244
            AD AIEAP+LSV KQ MR HIR LL++L+PKERKIIRLRFGI DG  KSLSEIG VFGLS
Sbjct: 471  ADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLS 530

Query: 243  KERVRQLESRALYKLKQCLNSQGLKAYGNLV 151
            KERVRQLE+RALYKLKQ LN  GL AY +L+
Sbjct: 531  KERVRQLETRALYKLKQNLNKHGLDAYSDLL 561


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  598 bits (1542), Expect = e-168
 Identities = 336/572 (58%), Positives = 409/572 (71%), Gaps = 15/572 (2%)
 Frame = -1

Query: 1821 MEAA-RNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTS 1645
            MEAA RN L SPP   S +T LRNCS      SVL LHE AAP L++ P  YL R+ P S
Sbjct: 1    MEAAGRNLLSSPPTF-SQKTQLRNCS-----SSVLMLHEHAAPVLSSVPHTYLGRYVPAS 54

Query: 1644 VHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQLLH 1468
                + H E    L L K+++TS AT+DRRL+ A +                + ++QLLH
Sbjct: 55   AIGPEQHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLH 114

Query: 1467 MPGLWYLFRSLEAIQSVPM---------EAEKFSNVEAKSVIVLAKKALSASREATLLAE 1315
             PG  Y F         P+         + +K  N E  SV+ LA+KAL AS+EA LLAE
Sbjct: 115  WPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAE 174

Query: 1314 QSKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKF--VVPERN 1141
             SKL    LD +  P+ L++   D  L+  +TV+STR +ER+S++RGA      V    N
Sbjct: 175  DSKL----LDDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNN 230

Query: 1140 YSGKLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQ 967
             SG+  ++RK+ E+ D ND LR+F  GPETK LLTA EES+LI+KIQ  +KL+EVK++LQ
Sbjct: 231  RSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQ 290

Query: 966  NEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLP 787
             +F  EP+ +EW EA G++ R+L+SQL SGK SREKLI+AN R+VVHIAKQYQGRGL+L 
Sbjct: 291  IQFAREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQ 350

Query: 786  DLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSK 607
            DLLQEGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+YALLSK
Sbjct: 351  DLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSK 410

Query: 606  VKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEV 427
            VK+AKR CI+QG+ HPTKE+IA CAGM+VE+L  LL   R PLSMQQ VWSDQDTTFQE+
Sbjct: 411  VKDAKRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEI 470

Query: 426  TADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGL 247
            TAD AIEAP+LSV KQ MR HIR LL++L+PKERKIIRLRFGI DG  KSLSEIG VFGL
Sbjct: 471  TADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGL 530

Query: 246  SKERVRQLESRALYKLKQCLNSQGLKAYGNLV 151
            SKERVRQLE+RALYKLKQ LN  GL AY +L+
Sbjct: 531  SKERVRQLETRALYKLKQNLNKHGLDAYSDLL 562


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  594 bits (1531), Expect = e-167
 Identities = 333/570 (58%), Positives = 404/570 (70%), Gaps = 12/570 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA  N L S P  P  RTH RN     SS SVL LH+Q APA+ + PT  +AR FPTSV
Sbjct: 1    MEAGTNILSSTPSFPP-RTHFRN-----SSSSVLMLHDQVAPAVASIPTT-IARKFPTSV 53

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHMP 1462
             +Q+  DE        KD+RT QATL++R +                       QLL  P
Sbjct: 54   LLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQP 113

Query: 1461 GLWYLFRSLEA----------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQ 1312
            GLWY   S +           ++S+  + E   +V+   V+ LAKKALSAS++A  L E 
Sbjct: 114  GLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYEN 173

Query: 1311 SKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNYSG 1132
            +KL G +L+ + SPS     S ++ LE  KTV+STRLLERRSK+R    K  V E + S 
Sbjct: 174  AKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKR-RNPKVAVHENHGSR 231

Query: 1131 KLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNKLQNEF 958
            +  +QRKI E +D  D LR+F  GPET KLLTA EES+LI++IQE ++LEEVK +LQ+  
Sbjct: 232  RAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHL 291

Query: 957  GHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLL 778
              EP++VEW EAVGLSC+ LQSQL+SG  SR+KLI+AN R+VVHIAKQYQGRGL+L DLL
Sbjct: 292  KREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLL 351

Query: 777  QEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKE 598
            QEGSMGLM S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY+LL KVKE
Sbjct: 352  QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKE 411

Query: 597  AKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTAD 418
            AKR  IQ+G H PTKEEIA   G+T+EKL +LL   RMPLSMQQPVW+DQDTTFQEVTAD
Sbjct: 412  AKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTAD 471

Query: 417  TAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKE 238
            T IE PD+SV KQ MR H+RNLL +L PKER+IIRLRFGI DG  ++LSEIG VFG SKE
Sbjct: 472  TGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKE 531

Query: 237  RVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            RVRQLE RAL+KLKQCL+S GL++Y +L++
Sbjct: 532  RVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  592 bits (1525), Expect = e-166
 Identities = 319/575 (55%), Positives = 412/575 (71%), Gaps = 17/575 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSS---RTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFP 1651
            MEA RN L SPP  PS    +  L + + +SSS SVL  +EQ+APA+ + PT+ +ARHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1650 TSVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQL 1474
            TSV +Q+  DE    L + K+ +TSQAT D R +   A               +    Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1473 LHMPGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLL 1321
            LH P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA  L
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1320 AEQSKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPER 1144
            AE  KL+G    D++L+       S    LE VKTV+ST+ LERRSK+R      V    
Sbjct: 181  AENPKLNGAEFTDISLT------SSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 234

Query: 1143 NY-SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNK 973
             Y S K  +++K++E FD+ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K+K
Sbjct: 235  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294

Query: 972  LQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLS 793
            LQ++FG EP+L+EW +A+GLSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG+ 
Sbjct: 295  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 354

Query: 792  LPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALL 613
            L DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LL
Sbjct: 355  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414

Query: 612  SKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQ 433
            S+V EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQ
Sbjct: 415  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474

Query: 432  EVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVF 253
            E+TADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++F
Sbjct: 475  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 534

Query: 252  GLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            GLSKERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 535  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  591 bits (1524), Expect = e-166
 Identities = 320/577 (55%), Positives = 414/577 (71%), Gaps = 19/577 (3%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRN-----CSFTSSSPSVLTLHEQAAPALNNTPTAYLARH 1657
            MEA RN L SPP  PS RT +++      S +SSS +VL  +EQ+APA+ + PT+ +ARH
Sbjct: 1    MEAGRNLLSSPPSFPS-RTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARH 59

Query: 1656 FPTSVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RI 1480
            FPTSV +Q+  DE    L + K+ +TSQAT D R +   A               +    
Sbjct: 60   FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEH 119

Query: 1479 QLLHMPGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREAT 1327
            Q LH P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA 
Sbjct: 120  QFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 179

Query: 1326 LLAEQSKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVP 1150
             LAE  KL+G    D++L+       S    LE VKTV+ST+ LERRSK+R      V  
Sbjct: 180  SLAENPKLNGAEFTDISLT------SSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTN 233

Query: 1149 ERNY-SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVK 979
               Y S K  +++K++E FD+ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K
Sbjct: 234  HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 293

Query: 978  NKLQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRG 799
            +KLQ++FG EP+L+EW +A+GLSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG
Sbjct: 294  SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 353

Query: 798  LSLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYA 619
            + L DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y 
Sbjct: 354  IGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 413

Query: 618  LLSKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTT 439
            LLS+V EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTT
Sbjct: 414  LLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 473

Query: 438  FQEVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGD 259
            FQE+TADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G+
Sbjct: 474  FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGN 533

Query: 258  VFGLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            +FGLSKERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 534  IFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  589 bits (1518), Expect = e-165
 Identities = 331/576 (57%), Positives = 405/576 (70%), Gaps = 18/576 (3%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSS------PSVLTLHEQAAPALNNTPTAYLAR 1660
            MEA  N L S P  P  RTH RN S + ++        VL LH+Q APA+ + PT  +AR
Sbjct: 1    MEAGTNILSSTPSFPP-RTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IAR 58

Query: 1659 HFPTSVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRI 1480
             FPTSV +Q+  DE        KD+RT QATL++R +                       
Sbjct: 59   KFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFER 118

Query: 1479 QLLHMPGLWYLFRSLEA----------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREA 1330
            QLL  PGLWY   S +           ++S+  + E   +V+   V+ LAKKALSAS++A
Sbjct: 119  QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178

Query: 1329 TLLAEQSKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVP 1150
              L E +KL G +L+ + SPS     S ++ LE  KTV+STRLLERRSK+R    K  V 
Sbjct: 179  VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKR-RNPKVAVH 236

Query: 1149 ERNYSGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKN 976
            E + S +  +QRKI E +D  D LR+F  GPET KLLTA EES+LI++IQE ++LEEVK 
Sbjct: 237  ENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKK 296

Query: 975  KLQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGL 796
            +LQ+    EP++VEW EAVGLSC+ LQSQL+SG  SR+KLI+AN R+VVHIAKQYQGRGL
Sbjct: 297  RLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGL 356

Query: 795  SLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYAL 616
            +L DLLQEGSMGLM S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY+L
Sbjct: 357  NLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 416

Query: 615  LSKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTF 436
            L KVKEAKR  IQ+G H PTKEEIA   G+T+EKL +LL   RMPLSMQQPVW+DQDTTF
Sbjct: 417  LGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTF 476

Query: 435  QEVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDV 256
            QEVTADT IE PD+SV KQ MR H+RNLL +L PKER+IIRLRFGI DG  ++LSEIG V
Sbjct: 477  QEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 536

Query: 255  FGLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            FG SKERVRQLE RAL+KLKQCL+S GL++Y +L++
Sbjct: 537  FGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  585 bits (1508), Expect = e-164
 Identities = 329/575 (57%), Positives = 412/575 (71%), Gaps = 17/575 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPS--VLTLHEQAAPALNNTPTAYLARHFPT 1648
            MEA R+FL S    PS+ THLR+    SSSPS  VL LHEQA PA+ + P   +ARHFPT
Sbjct: 1    MEAGRHFLSSSSAFPST-THLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPT 58

Query: 1647 SVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLH 1468
            SV +Q+  DE    L + K+ +TS+A LDR  I   A                S    L 
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLL 118

Query: 1467 MPGLWYLFRSLEA---------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAE 1315
               +  +F SL+          ++S+   + K  +VE  +V+ LAKKALSASREA  LAE
Sbjct: 119  NHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 1314 QSKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKR----RGAKTKFVVPE 1147
             S+  G + D  L  + L    A+  +E  KTV+STR+LERR KR    +  K+K +  E
Sbjct: 179  DSQSMGADFD-DLGYTSL----ANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHE 233

Query: 1146 RNYSGKLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNK 973
             N      +++KI+E F+ ND LR+F  GPET+ LLTA EE++LI ++Q+  KLEEVK++
Sbjct: 234  SNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSR 293

Query: 972  LQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLS 793
            LQ +FG EP+L+EW EAVG+SC+ L+SQL SG  SREKLI+AN R+VVHIAKQYQGRGL 
Sbjct: 294  LQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLG 353

Query: 792  LPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALL 613
            L DL+QEGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y+LL
Sbjct: 354  LQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLL 413

Query: 612  SKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQ 433
             KV EAK++CIQ+G+H+P KEE+A   G+TVEKL+KLL+  RMPLSMQQPVW+DQDTTFQ
Sbjct: 414  GKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQ 473

Query: 432  EVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVF 253
            EVTADT +E PD+SV KQ MR H+R+LLSILN +ER+IIRLR+GIEDG Q+SLSEIG +F
Sbjct: 474  EVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMF 533

Query: 252  GLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            GLSKERVRQLESRA  KL+Q L SQGL AYG L++
Sbjct: 534  GLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  583 bits (1502), Expect = e-163
 Identities = 315/572 (55%), Positives = 408/572 (71%), Gaps = 14/572 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA RN L SPP  PS RT +++   +S+S S       +APA+ + PT+ +ARHFPTSV
Sbjct: 1    MEAGRNLLSSPPSFPS-RTRVKHSLSSSASSS----SSSSAPAVASVPTSSVARHFPTSV 55

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQLLHM 1465
             +Q+  DE    L + K+ +TSQAT D R +   A               +    Q LH 
Sbjct: 56   LLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHW 115

Query: 1464 PGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQ 1312
            P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA  LAE 
Sbjct: 116  PDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAEN 175

Query: 1311 SKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNY- 1138
             KL+G    D++L+       S    LE VKTV+ST+ LERRSK+R      V     Y 
Sbjct: 176  PKLNGAEFTDISLT------SSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYN 229

Query: 1137 SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNKLQN 964
            S K  +++K++E FD+ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K+KLQ+
Sbjct: 230  SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 289

Query: 963  EFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPD 784
            +FG EP+L+EW +A+GLSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG+ L D
Sbjct: 290  QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 349

Query: 783  LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKV 604
            LLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V
Sbjct: 350  LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRV 409

Query: 603  KEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVT 424
             EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+T
Sbjct: 410  LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 469

Query: 423  ADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLS 244
            ADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLS
Sbjct: 470  ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 529

Query: 243  KERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            KERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 530  KERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  577 bits (1488), Expect = e-162
 Identities = 320/573 (55%), Positives = 412/573 (71%), Gaps = 15/573 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEAARN L+SPP   S+RT L++  F++SS SVL  HEQAAPA  + P   +ARHFPTSV
Sbjct: 1    MEAARN-LLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSV 59

Query: 1641 HIQDHHDE--ALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLH 1468
             +Q+  D+   L  L   K+ +      D++ I   A                 + +LL 
Sbjct: 60   LLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLGFEK-KLLQ 118

Query: 1467 MPGLWYLFRSLEA---------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAE 1315
             P L  L   LE+         +QSV  + ++  +VE  +++ LAKKALSAS++A  L+E
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178

Query: 1314 QSKLSGNNLDVALSPSPLTSESADIHLEV--VKTVKSTRLLERRSKRRGAKTKFVVPERN 1141
              KL   +LD +LS S  ++ S  + +E   V TV+STR LER+SKRR  + K  + E  
Sbjct: 179  DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETY 235

Query: 1140 YSGKLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQ 967
             S +  ++RK++E FD ND LR+F  GPETK LLTA EES+L  ++Q  ++LE+VK+KLQ
Sbjct: 236  SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQ 295

Query: 966  NEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLP 787
            ++FG EP+LVEW EA+GL C  LQ++L+SG  SR+KLI+AN R+VVHIAKQYQ RGLSL 
Sbjct: 296  SQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQ 355

Query: 786  DLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSK 607
            DLLQEGSMGLM+S+E+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RLP+N++ LLSK
Sbjct: 356  DLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSK 415

Query: 606  VKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEV 427
            V +AK++ I++G+H P+KEE+A   G+TVEKLDKLLFT RMPLSMQQ VW DQD TFQEV
Sbjct: 416  VLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEV 475

Query: 426  TADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGL 247
            T DT IE PD+SV KQ MR H+RNLLS+L+P+ER II+LRFGIE+  + SLSEIG++FGL
Sbjct: 476  TPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGL 535

Query: 246  SKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            SKERVRQLESRALYKLKQCLN  GL AY +L++
Sbjct: 536  SKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  574 bits (1479), Expect = e-161
 Identities = 316/575 (54%), Positives = 405/575 (70%), Gaps = 17/575 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSS---RTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFP 1651
            MEA RN L SPP  PS    +  L + + +SSS SVL  +EQ+APA+ + PT+ +ARHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1650 TSVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQL 1474
            TSV +Q+  DE    L + K+ +TSQAT D R +   A               +    Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1473 LHMPGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLL 1321
            LH P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA  L
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1320 AEQSKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPER 1144
            AE  KL+G    D++L+       S    LE VKTV+STR LERRSK+R      V    
Sbjct: 181  AENPKLNGAEFTDISLT------SSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 234

Query: 1143 NY-SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNK 973
             Y S K  +++K++E FD ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K+K
Sbjct: 235  TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294

Query: 972  LQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLS 793
            LQ++FG EP+L+       LSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG+ 
Sbjct: 295  LQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 354

Query: 792  LPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALL 613
            L DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LL
Sbjct: 355  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414

Query: 612  SKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQ 433
            S+V EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQ
Sbjct: 415  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474

Query: 432  EVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVF 253
            E+TADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++F
Sbjct: 475  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 534

Query: 252  GLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            GLSKERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 535  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  574 bits (1479), Expect = e-161
 Identities = 320/564 (56%), Positives = 401/564 (71%), Gaps = 6/564 (1%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSS---PSVLTLHEQAAPALNNTPTAYLARHFP 1651
            ME AR FL SPP  PS RTH +N   +S +     V  LHEQA PA+ + PT  +AR+FP
Sbjct: 1    METARTFLSSPPPFPS-RTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFP 59

Query: 1650 TSVHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLL 1471
            TSV +Q+  DE    L + K+ +T QAT+D + ++                       +L
Sbjct: 60   TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQL------IL 113

Query: 1470 HMPGLWYLFRSLEAIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQSKLSGNN 1291
            H    W L      +QS+    ++   VE  +VI LA+KALSAS+EA LLA++     + 
Sbjct: 114  HSNLSWSL-----TMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQKCANLDDT 168

Query: 1290 LDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSK-RRGAKTKFVVPERNYSGKLHLQR 1114
            +   L P+ L++ S    LE VKTV+STR LER+SK RR  KTK +  E   S +  +Q+
Sbjct: 169  VSTGLEPTDLSNFS----LEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQK 224

Query: 1113 KITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQNEFGHEPSL 940
            KI E FD  D LR+F  GPETK LLTA EES+LI ++Q+ + LE VK K + +FG +P+L
Sbjct: 225  KINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284

Query: 939  VEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLLQEGSMG 760
            VEW +AVGLS   +QSQL+SG  SREKLI+AN R+VVHIAKQYQGRGLSL DLLQEGSMG
Sbjct: 285  VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMG 344

Query: 759  LMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEAKRTCI 580
            LM+SIEKFKPQVGCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y  L KV EAKR+ I
Sbjct: 345  LMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYI 404

Query: 579  QQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADTAIEAP 400
             +G+H+PTKEE+A   G+T  +L++LL+ ARMPLSMQQ VW+DQ+TTFQE+TAD  +E P
Sbjct: 405  MEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIP 464

Query: 399  DLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKERVRQLE 220
            +L V KQ MR H+ +LL+ILNP+ERKIIRLR+GIEDG +KSLSEIG VFGLSKERVRQLE
Sbjct: 465  ELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLE 524

Query: 219  SRALYKLKQCLNSQGLKAYGNLVL 148
            SRALYKLKQCL S GL+AY +L++
Sbjct: 525  SRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  565 bits (1456), Expect = e-158
 Identities = 312/572 (54%), Positives = 401/572 (70%), Gaps = 14/572 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA RN L SPP  PS RT +++   +S+S S       +APA+ + PT+ +ARHFPTSV
Sbjct: 1    MEAGRNLLSSPPSFPS-RTRVKHSLSSSASSS----SSSSAPAVASVPTSSVARHFPTSV 55

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQLLHM 1465
             +Q+  DE    L + K+ +TSQAT D R +   A               +    Q LH 
Sbjct: 56   LLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHW 115

Query: 1464 PGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQ 1312
            P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA  LAE 
Sbjct: 116  PDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAEN 175

Query: 1311 SKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNY- 1138
             KL+G    D++L+       S    LE VKTV+STR LERRSK+R      V     Y 
Sbjct: 176  PKLNGAEFTDISLT------SSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYN 229

Query: 1137 SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNKLQN 964
            S K  +++K++E FD ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K+KLQ+
Sbjct: 230  SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 289

Query: 963  EFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPD 784
            +FG EP+L+       LSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG+ L D
Sbjct: 290  QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 349

Query: 783  LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKV 604
            LLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V
Sbjct: 350  LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRV 409

Query: 603  KEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVT 424
             EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+T
Sbjct: 410  LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 469

Query: 423  ADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLS 244
            ADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLS
Sbjct: 470  ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 529

Query: 243  KERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            KERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 530  KERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  560 bits (1444), Expect = e-157
 Identities = 318/561 (56%), Positives = 389/561 (69%), Gaps = 4/561 (0%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA R  L S P  P+ RTHL+N    S + SVL L EQA PA+++ PT   A+HFPTSV
Sbjct: 1    MEAGRTLLSSSPSFPT-RTHLKN----SLTSSVLILREQATPAVSSIPTTSTAQHFPTSV 55

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLIN-ATAXXXXXXXXXXXXXXSKSRIQLLHM 1465
             +Q+  DE      + K+ R SQATLDRR     T+                   QL H 
Sbjct: 56   LLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHW 115

Query: 1464 PGLWYLFRSLEAIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQSKLSGNNLD 1285
            P  W L              +K  +VE  +VI LAK+ALSAS+ A  LA+      NN D
Sbjct: 116  PAYWNL-------------TDKLIDVEPTNVINLAKRALSASKHAAFLAD------NNTD 156

Query: 1284 VALSPSPLTSESADIHLEVVKTVKSTRLLERRS-KRRGAKTKFVVPERNYSGKLHLQRKI 1108
            +    +  ++ S+   LE VK V+S R L R+S  RR  KTK ++ E   S    +Q+++
Sbjct: 157  L---DNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRL 213

Query: 1107 TEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQNEFGHEPSLVE 934
            ++ FD ND LR+F  GPETK LLTA EE +LI +IQ+ + LE VKN+L+++FG EP+LVE
Sbjct: 214  SQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVE 273

Query: 933  WGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLLQEGSMGLM 754
            W +AVGLSC  L+ QL+SG  SREKLI+AN R+VVHIAK+YQ RGL L DLLQEG++GLM
Sbjct: 274  WAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLM 333

Query: 753  RSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEAKRTCIQQ 574
            +SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+Y LL KV EAKR+ IQ+
Sbjct: 334  KSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQE 393

Query: 573  GSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADTAIEAPDL 394
            G+H PT EEIA   G+ ++KL+KLL   R PLSMQQ VWSDQ+TTFQE+TADT IE PD+
Sbjct: 394  GNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDM 453

Query: 393  SVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKERVRQLESR 214
            SV KQ MR HIR LL+IL+ KER+IIRLRFGIEDG QKSLSEIG+VFGLSKERVRQLESR
Sbjct: 454  SVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESR 513

Query: 213  ALYKLKQCLNSQGLKAYGNLV 151
            ALYKLKQC+ S GL AY +L+
Sbjct: 514  ALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  560 bits (1443), Expect = e-157
 Identities = 318/561 (56%), Positives = 389/561 (69%), Gaps = 4/561 (0%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA R  L S P  P+ RTHL+N    S + SVL L EQA PA+++ PT   A+HFPTSV
Sbjct: 1    MEAGRTLLSSSPSFPT-RTHLKN----SLTSSVLILREQATPAVSSIPTTSTAQHFPTSV 55

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLIN-ATAXXXXXXXXXXXXXXSKSRIQLLHM 1465
             +Q+  DE      + K+ R SQATLDRR     T+                   QL H 
Sbjct: 56   LLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHW 115

Query: 1464 PGLWYLFRSLEAIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQSKLSGNNLD 1285
            P  W L              +K  +VE  +VI LAK+ALSAS+ A  LA+      NN D
Sbjct: 116  PAYWNL-------------TDKLIDVEPTNVINLAKRALSASKHAAFLAD------NNTD 156

Query: 1284 VALSPSPLTSESADIHLEVVKTVKSTRLLERRS-KRRGAKTKFVVPERNYSGKLHLQRKI 1108
            +    +  ++ S+   LE VK V+S R L R+S  RR  KTK ++ E   S    +Q+++
Sbjct: 157  L---DNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRL 213

Query: 1107 TEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQNEFGHEPSLVE 934
            ++ FD ND LR+F  GPETK LLTA EE +LI +IQ+ + LE VKN+L+++FG EP+LVE
Sbjct: 214  SQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVE 273

Query: 933  WGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLLQEGSMGLM 754
            W +AVGLSC  L+ QL+SG  SREKLI+AN R+VVHIAK+YQ RGL L DLLQEG++GLM
Sbjct: 274  WAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLM 333

Query: 753  RSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEAKRTCIQQ 574
            +SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+Y LL KV EAKR+ IQ+
Sbjct: 334  KSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQE 393

Query: 573  GSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADTAIEAPDL 394
            G+H PT EEIA   G+ ++KL+KLL   R PLSMQQ VWSDQ+TTFQE+TADT IE PD+
Sbjct: 394  GNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDM 453

Query: 393  SVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKERVRQLESR 214
            SV KQ MR HIR LL+IL+ KER+IIRLRFGIEDG QKSLSEIG+VFGLSKERVRQLESR
Sbjct: 454  SVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESR 513

Query: 213  ALYKLKQCLNSQGLKAYGNLV 151
            ALYKLKQC+ S GL AY +L+
Sbjct: 514  ALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  559 bits (1440), Expect = e-156
 Identities = 309/572 (54%), Positives = 400/572 (69%), Gaps = 14/572 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA RN L SPP  PS RT +++   +S+S S       ++ ++ + PT+ +ARHFPTSV
Sbjct: 1    MEAGRNLLSSPPSFPS-RTRVKHSLSSSASSS-------SSSSVASVPTSSVARHFPTSV 52

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKS-RIQLLHM 1465
             +Q+  DE    L + K+ +TSQAT D R +   A               +    Q LH 
Sbjct: 53   LLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHW 112

Query: 1464 PGLWYLFRSLE---------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQ 1312
            P LW L   ++          +QS+  + E+  + E    + LA+KALSAS+EA  LAE 
Sbjct: 113  PDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAEN 172

Query: 1311 SKLSGNNL-DVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNY- 1138
             KL+G    D++L+       S    LE VKTV+STR LERRSK+R      V     Y 
Sbjct: 173  PKLNGAEFTDISLT------SSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYN 226

Query: 1137 SGKLHLQRKITEAFDKNDALRIFT-GPET-KLLTANEESDLIMKIQEYLKLEEVKNKLQN 964
            S K  +++K++E FD ND LR+F  GPET KLLTA+EE +LI +IQ+ ++LE+ K+KLQ+
Sbjct: 227  SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 286

Query: 963  EFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPD 784
            +FG EP+L+       LSCRDL+S+L+SG  SREKLI+AN RLVVH+AKQYQGRG+ L D
Sbjct: 287  QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 346

Query: 783  LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKV 604
            LLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V
Sbjct: 347  LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRV 406

Query: 603  KEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVT 424
             EAKR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+T
Sbjct: 407  LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 466

Query: 423  ADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLS 244
            ADT +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLS
Sbjct: 467  ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 526

Query: 243  KERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            KERVRQLESRALY+LKQ L  +    Y +L++
Sbjct: 527  KERVRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  541 bits (1394), Expect = e-151
 Identities = 307/564 (54%), Positives = 382/564 (67%), Gaps = 6/564 (1%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            MEA R+FL S    PS+         +S S SVL LHEQAAPA+ + PT+++ RHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHMP 1462
             +Q+  DE    L + K+++ SQATLDR  I  T                  R   +   
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFNIDDFYKLVKDFRQLHVTPS 120

Query: 1461 GLWYLFRSLEAIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQSKLSGNNLDV 1282
             +     +  A++S    A    +VE   V+ LAK ALSAS EA  LAE SK     L+ 
Sbjct: 121  QIGENSPTGSALES-NTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSKSISAGLNE 179

Query: 1281 ALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNY----SGKLHLQR 1114
            + S      E         +TV+ST+LLERR KR   +        NY    S    L+R
Sbjct: 180  STSLGLGWEE---------ETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSDLRR 230

Query: 1113 KITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQNEFGHEPSL 940
            K  E  + ND LR+F  GPET+ LLT  EE++LI ++Q+  KLE VK++LQ++FG EP+L
Sbjct: 231  KYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFGREPTL 290

Query: 939  VEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLLQEGSMG 760
            +EW EAVG+SC+ LQSQL  G  SREKLI++N R+VVHIAKQYQGRGL L DLLQEGSMG
Sbjct: 291  IEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQEGSMG 350

Query: 759  LMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEAKRTCI 580
            LM+S+EKFKPQ GCRFATYAYWW+RQ IRKAIFQHSRTIRLP+N+Y LL KV EAK++ I
Sbjct: 351  LMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKKSYI 410

Query: 579  QQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADTAIEAP 400
            Q+G+ +P++EE+A   GM+VEKL KLL+  RMP+SMQQ VW+DQDTTFQEVTADT IE P
Sbjct: 411  QEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTADTGIEIP 470

Query: 399  DLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKERVRQLE 220
            DLSV KQ MR H+RNLL  L  +ER+IIRLR+GIEDG Q+SL+EIG++FGLSKERVRQLE
Sbjct: 471  DLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGLSKERVRQLE 530

Query: 219  SRALYKLKQCLNSQGLKAYGNLVL 148
            SRA  KLK+ L SQGL AY  L++
Sbjct: 531  SRAFLKLKESLGSQGLGAYAPLLV 554


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  534 bits (1375), Expect = e-149
 Identities = 301/577 (52%), Positives = 385/577 (66%), Gaps = 19/577 (3%)
 Frame = -1

Query: 1821 MEAARN-FLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTS 1645
            ME AR  F  SPP  P +         +SS+ SVL LHEQA+P + +  + + A++FP S
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60

Query: 1644 VHIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHM 1465
            V + +  DE    L +SK+ +TSQA L  R ++                    R  L H 
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120

Query: 1464 PGLWYLFRSLE--------AIQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQS 1309
            P L YL  S +         ++ V ++ E+  N    + + LAKKALS S++ + + E  
Sbjct: 121  PNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVED- 179

Query: 1308 KLSGNNLDVALSPSPLTSES-ADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNYSG 1132
             L     D    P  L S S AD  +   KTV+STRLLERRSK+R      V+ +  Y  
Sbjct: 180  -LKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 238

Query: 1131 -------KLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVK 979
                   KL  ++K  E  D++D LR+F  GPETK LLT  +ES LI +IQ+ L+LEEVK
Sbjct: 239  RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 298

Query: 978  NKLQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRG 799
              LQ++FG EP++ EW E  GL+CR LQSQL+SG  SREKLI AN R+VVH+AK YQGRG
Sbjct: 299  TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 358

Query: 798  LSLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYA 619
            LSL DLLQEGSMGLM+S+EKF P  G RF  YA+WWIRQAIRKA+F+HSRTIRLP+ ++ 
Sbjct: 359  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 418

Query: 618  LLSKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTT 439
            LL KV EAK+  IQ+G+ HPTKEE+A   G+TVEK+DKLLF+AR+P+SMQQ VW+DQ+TT
Sbjct: 419  LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 478

Query: 438  FQEVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGD 259
            FQE+TAD  +EA D++VEKQ MR H+ N+LS+L+PKER+IIRLR+G EDG QKSLSEIGD
Sbjct: 479  FQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGD 538

Query: 258  VFGLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            +FGLSKERVRQLE RALYKLK+CL  QGL AY +L+L
Sbjct: 539  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  530 bits (1366), Expect = e-148
 Identities = 305/570 (53%), Positives = 383/570 (67%), Gaps = 12/570 (2%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            ME  RN L  PP  PS RTHLRN   +SSS S        A  + + P   +A+ F TSV
Sbjct: 1    MEVGRNLLSPPPSFPS-RTHLRNYLPSSSSASTSA---NVATGITSMPATSIAQPFSTSV 56

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHMP 1462
             +Q+  DE    L ++K+ +TSQ  L+RR  ++ A               +     +H P
Sbjct: 57   LLQEQRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVHWP 116

Query: 1461 GLWYLFRSLEA----IQSVPMEAEKFS-----NVEAKSVIVLAKKALSASREATLLAEQS 1309
            G W++  SL+       S+ ME    S     +VE    I LAKKAL AS+EA  LAE+S
Sbjct: 117  GFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEES 176

Query: 1308 KLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNYSGK 1129
            KL G + D  LS S L            KTV+STRLLERRSKRR      V+   N   +
Sbjct: 177  KLVGTDSDDMLSVSFLGKGD--------KTVRSTRLLERRSKRRKVPESSVLFYENPRNR 228

Query: 1128 L-HLQRKITEAFDKNDALRIF-TGPETK-LLTANEESDLIMKIQEYLKLEEVKNKLQNEF 958
               ++++++E  + +D LR+F  GPET+ LLT  EES+LI ++Q+ +KLE+VK +LQ+EF
Sbjct: 229  AADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEF 288

Query: 957  GHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGLSLPDLL 778
            G EP+LVEW EAVGLSCR LQSQ+ SG  SREKLI AN RLVVHIAKQYQGRG+ + DL+
Sbjct: 289  GREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLM 348

Query: 777  QEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKE 598
            QEGSMGLM+S+EKFKPQVGCRFA+YAYWWIRQ                +N+Y LL KV E
Sbjct: 349  QEGSMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVLE 393

Query: 597  AKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTAD 418
            AKR+ IQ+G+H+P+KE++A   G+TVEKL+KLL+  R+PLSMQQPVW+DQ TTFQEVTAD
Sbjct: 394  AKRSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTAD 453

Query: 417  TAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKE 238
            T IE PD+SV KQ MR H+R LL  LN +ER+IIRLRFGIEDG+QKSLSEIG ++GLSKE
Sbjct: 454  TRIEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKE 513

Query: 237  RVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            RVRQLESRALYKLKQCL SQ L+AY +L++
Sbjct: 514  RVRQLESRALYKLKQCLGSQDLEAYADLIV 543


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  529 bits (1363), Expect = e-147
 Identities = 301/576 (52%), Positives = 381/576 (66%), Gaps = 18/576 (3%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            ME +R    S P  P    H  N    SSS SVL L EQA+P + +  + + A++FP SV
Sbjct: 1    MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHMP 1462
             +Q+  DE    L +SK+ +TSQA L  R ++                    R  L + P
Sbjct: 61   LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120

Query: 1461 GLWYLFRSLEA--------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAEQSK 1306
             L  L  S +         +Q V  + ++ +N    + + LAKKALS S++ + + E   
Sbjct: 121  HLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED-- 178

Query: 1305 LSGNNLDVALSPSPLTSES-ADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNYSG- 1132
            L     D    P  L S   AD  +   KTV+STRLLERRSK+R      V+ +  Y   
Sbjct: 179  LKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLAR 238

Query: 1131 ------KLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEVKN 976
                  KL +++K  E  D+ND L  F  GPETK LLT  +ES LI +IQ+ L+LEEVK 
Sbjct: 239  KDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKT 298

Query: 975  KLQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGRGL 796
            KLQ++FG EP++ EW E VGL+CR L +QL SG  SREKLI AN R+VVH+AK YQGRGL
Sbjct: 299  KLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGL 358

Query: 795  SLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYAL 616
            SL DLLQEGSMGLM+S+EKF P VG RF  YA+WWIRQAIRKA+F+HSRTIRLP+ ++ L
Sbjct: 359  SLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFIL 418

Query: 615  LSKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTF 436
            L KV EAK+  IQ+G+ HPTKEE+A   G+TVEK+DKLLF+AR+P+SMQQ VW+DQ+TTF
Sbjct: 419  LGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTF 478

Query: 435  QEVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDV 256
            QE+TAD  +EA D+SVEKQ MR H+ N+LSIL+PKER+IIRLR+G EDG QKSLSEIGD+
Sbjct: 479  QEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDI 538

Query: 255  FGLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            FGLSKERVRQLE RALYKLK+CL  QGL AY +L+L
Sbjct: 539  FGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  528 bits (1359), Expect = e-147
 Identities = 297/578 (51%), Positives = 384/578 (66%), Gaps = 20/578 (3%)
 Frame = -1

Query: 1821 MEAARNFLVSPPLIPSSRTHLRNCSFTSSSPSVLTLHEQAAPALNNTPTAYLARHFPTSV 1642
            ME AR    S P  P  RTH  N   TSSS SVL L EQA+  + +  + + A++FP SV
Sbjct: 10   MEFARTMFCSSPPFPP-RTHPWNTHPTSSSTSVLMLREQASSTVASWSSNFSAQNFPASV 68

Query: 1641 HIQDHHDEALSTLLLSKDQRTSQATLDRRLINATAXXXXXXXXXXXXXXSKSRIQLLHMP 1462
             +Q+  DE    L +SK+ +TSQA L+ R ++                    R  L   P
Sbjct: 69   LLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVHEENNTGNADQIVLDFRKHLHLWP 128

Query: 1461 GLWYLFRSLEA--------IQSVPMEAEKFSNVEAKSVIVLAKKALSASREATLLAE--- 1315
             L  L  S +         +Q V +++E+ ++    + + LAKKALS +++ + + E   
Sbjct: 129  RLQNLLNSSQTGEIAASSTLQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVEGLK 188

Query: 1314 QSKLSGNNLDVALSPSPLTSESADIHLEVVKTVKSTRLLERRSKRRGAKTKFVVPERNY- 1138
              K   +++   L+ + L   S   +    KTV+STRLLERR+K+R      V  +  Y 
Sbjct: 189  SIKADDDSIPFGLASTGLADPSVGRN----KTVRSTRLLERRAKQRKVSKSIVKDDETYL 244

Query: 1137 ------SGKLHLQRKITEAFDKNDALRIFT-GPETK-LLTANEESDLIMKIQEYLKLEEV 982
                    ++  ++KI E FD+ND LR+F  GPETK LLT  +ES+LI KIQ+ LKLEE+
Sbjct: 245  TRKDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEEL 304

Query: 981  KNKLQNEFGHEPSLVEWGEAVGLSCRDLQSQLYSGKLSREKLIHANYRLVVHIAKQYQGR 802
            K +LQ++FG EP++ EW E  GL+CR L SQL  G  SREKLI AN R+VVH+AK YQGR
Sbjct: 305  KTRLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGR 364

Query: 801  GLSLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMY 622
            GLSL DLLQEGSMGLM+S+EKF P  G RF  YA+WWIRQAIRKA+F+HSRTIRLP+ +Y
Sbjct: 365  GLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVY 424

Query: 621  ALLSKVKEAKRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDT 442
              L K+ EAK+  IQ+G+ HPTKEE+A   G+TVEK+DKLL+ AR+P+SMQQ VW+DQDT
Sbjct: 425  IQLGKIMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYAARIPISMQQTVWADQDT 484

Query: 441  TFQEVTADTAIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIG 262
            TFQE+TAD  +EA DLSVEKQ MR H+ N+L+IL PKERKIIRLR+G EDG Q+SLSEIG
Sbjct: 485  TFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQRSLSEIG 544

Query: 261  DVFGLSKERVRQLESRALYKLKQCLNSQGLKAYGNLVL 148
            D+FGLSKERVRQLE RALYKLK+CL  QGL AY +L+L
Sbjct: 545  DIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 582