BLASTX nr result
ID: Catharanthus23_contig00003514
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00003514
(2322 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 174 1e-77
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 169 9e-58
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 176 3e-57
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 149 1e-54
gb|EEC75227.1| hypothetical protein OsI_11496 [Oryza sativa Indi... 144 4e-50
gb|ABB46931.2| retrotransposon protein, putative, unclassified [... 148 5e-50
gb|ABF95850.1| retrotransposon protein, putative, unclassified [... 143 1e-49
gb|EEE59033.1| hypothetical protein OsJ_10782 [Oryza sativa Japo... 143 1e-49
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 160 4e-48
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja... 148 4e-45
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 156 6e-45
gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indi... 135 8e-45
gb|EEC83406.1| hypothetical protein OsI_28856 [Oryza sativa Indi... 136 7e-43
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 157 2e-42
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 133 2e-42
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 133 2e-42
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 156 5e-42
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group... 130 9e-42
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 152 2e-41
ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group] g... 128 2e-41
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 174 bits (442), Expect(5) = 1e-77
Identities = 81/194 (41%), Positives = 128/194 (65%)
Frame = -3
Query: 847 NEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNR 668
N+ I I K + P+ FR I LCN+V K++TK+I NR+KP++ L+S Q +F+PNR
Sbjct: 492 NDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSFVPNR 551
Query: 667 QASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKL 488
Q +DN+++VQEM S++ + KK + VK+D EKAYDR++W F+ +++ + + + +
Sbjct: 552 QITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFIRESLMELRIPQHLVDI 611
Query: 487 IIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWK 308
++ CV+ L +LWNG+ +E I R LR DPLSPYL+V+ ++ L+ +I V WK
Sbjct: 612 VMNCVSSANLQILWNGEPMEKICPTRGLRQGDPLSPYLYVICMERLAHLIDQEVTNGNWK 671
Query: 307 VVKASRHSPSISHV 266
VKASR+ P IS++
Sbjct: 672 PVKASRNGPPISNL 685
Score = 89.0 bits (219), Expect(5) = 1e-77
Identities = 73/282 (25%), Positives = 126/282 (44%), Gaps = 10/282 (3%)
Frame = -2
Query: 1676 GLCNQKWNMMFQAAVVQHLPRXXXXXXXXXXXLYGTAGKRSILWPFRLLAAWQNQTQFPD 1497
GL N +W + F VV++LP+ G A I+ PFR AAW N F +
Sbjct: 201 GLANSEWKLKFTEGVVRNLPKSQSDHCPILISTSGFAPVPRIIKPFRFQAAWLNHQVFCE 260
Query: 1496 FLARTW*SS------IEDLQSKINRFTSRVKTEIDKYLEIFPIEGRDILHELIGYKPP*L 1335
F+ + W + ++ K+N++ +++ IF + ++ + G +
Sbjct: 261 FVRKNWNADAPIVPFLKSFADKLNKWNK------EEFYNIFRKKS-ELWARISGVQALLS 313
Query: 1334 NTRQPIWWSWKKDLFRSVMIFKIRRKHVVIEI*RT*-LKEGEGSTKYFHATIVIRKKARR 1158
RQ + L R + I + + + R + +G+ +T+YFH + VIR+ R
Sbjct: 314 TGRQNHLIKLEAKLRREMDIVLDDEETLWFQKSRMEAICDGDRNTRYFHLSTVIRRSRNR 373
Query: 1157 VTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDDN--RQPYLDFFAL*TL-EIQSLN 987
+ L++ D + N +K M +++ L++ D N P DFF T + + +
Sbjct: 374 IDMLQNNDGEWISNPMEVKAMVLGYWKHLFSEDSVQSNFCHLP-RDFFPQITADDFEKMM 432
Query: 986 RQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDSV 861
R + E E+ +A M KAPGPD F+QR D VK +V
Sbjct: 433 RPLSEVEVTLALKSMKPFKAPGPDGFQPLFYQRFWDLVKPNV 474
Score = 55.8 bits (133), Expect(5) = 1e-77
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Frame = -1
Query: 2115 FEGFICSEAKGFSGGIWLFWRKSSIDFDTLFINNQCVTVVALTG*SAPWVLSTIYASTVE 1936
F G EA+GF GGIWLFW+ + ++Q +TV PW+ S IYAS
Sbjct: 53 FSGQTRVEAEGFRGGIWLFWKSEEVTVTPYGSHSQHLTVEIRRIGDDPWLFSAIYASPDS 112
Query: 1935 KYRRELSNYVGKIGDIMCYLGCS*GIVIKSYLIMRKKGVNRT*V-RRAEPL*DAILNYQL 1759
R+EL + +I + G ++ + + G + + RR + + I N L
Sbjct: 113 TLRKELWRELEQIKNQYTGPWLLAGDFNETSSLCERNGSESSEMQRRCKDFANWIENNAL 172
Query: 1758 IDLGCSGPSFT 1726
IDLG +GP+ T
Sbjct: 173 IDLGFTGPAHT 183
Score = 33.5 bits (75), Expect(5) = 1e-77
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2
Query: 239 SKAFTKQALVMARIMKEFCIDIGKKVNTQKSKLFTSKRIH 120
S+A +QA VM + FC G KVN KSK++ S H
Sbjct: 695 SEASVEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTH 734
Score = 29.6 bits (65), Expect(5) = 1e-77
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 126 NTSEHVVNILSQTFNIPYTDDLGLYLGIPIIHGRLSHK 13
NT + + + T + T D G YLG+P I+GR S +
Sbjct: 732 NTHLDIRDAVCNTLAMEATADFGKYLGVPTINGRSSKR 769
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 169 bits (428), Expect(4) = 9e-58
Identities = 85/194 (43%), Positives = 130/194 (67%)
Frame = -3
Query: 847 NEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNR 668
N+AL+ I+K KPE + FR ++LCNV+ K+ITK++ R+K +ISKL+ QA+FIP R
Sbjct: 349 NDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGR 408
Query: 667 QASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKL 488
+ DNIV+VQE + S++ + +K +++K+DLEKAYDR++W+FL++ +E GLS
Sbjct: 409 LSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSR 468
Query: 487 IIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWK 308
I+ VT + +LWNG++ + + R LR DPLSPYLFVL ++ L +I SV ++ WK
Sbjct: 469 IMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWK 528
Query: 307 VVKASRHSPSISHV 266
+ S +SHV
Sbjct: 529 PIAVSCGGSKLSHV 542
Score = 66.6 bits (161), Expect(4) = 9e-58
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Frame = -2
Query: 1217 GEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD--N 1044
G+ +T +FH + +IR++ R+ LK DD V + L+ MA +Y++LY+ ++ + N
Sbjct: 211 GDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRN 270
Query: 1043 RQPYLDFFAL*TLEIQSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDS 864
P F ++ E +L + +AE+ A M + KAPGPD F+Q+ + V S
Sbjct: 271 MLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPS 330
Query: 863 VTQ 855
VT+
Sbjct: 331 VTR 333
Score = 33.9 bits (76), Expect(4) = 9e-58
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -2
Query: 239 SKAFTKQALVMARIMKEFCIDIGKKVNTQKSKLFTSKRIHQNM 111
++A Q ++ R+++ FC G+KV+ +KSK+F S + + M
Sbjct: 552 AEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREM 594
Score = 25.0 bits (53), Expect(4) = 9e-58
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 1416 NRQVFGNISH*RKRYLARINRVQTPLTQYKTTYLVELEERFIQE 1285
NR+VFG+I +++ +A I VQ L + L+ EE ++E
Sbjct: 144 NREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKE 187
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 176 bits (445), Expect(3) = 3e-57
Identities = 88/194 (45%), Positives = 130/194 (67%)
Frame = -3
Query: 847 NEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNR 668
N+ L+ ++K KPE + FR ++LCNV+ K+ITK++ R+K +ISKL+ QA+FIP R
Sbjct: 301 NDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGR 360
Query: 667 QASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKL 488
+ DNIVVVQE + S++ + +K +++K+DLEKAYDRI+W+FL + +E GLS K
Sbjct: 361 LSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKR 420
Query: 487 IIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWK 308
I+ CV ++ LLWNG+K + +R LR DP+SPYLFVL I+ L I +V + WK
Sbjct: 421 IMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWK 480
Query: 307 VVKASRHSPSISHV 266
+ S+ P +SHV
Sbjct: 481 SISISQGGPKVSHV 494
Score = 70.9 bits (172), Expect(3) = 3e-57
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Frame = -2
Query: 1217 GEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDDNR- 1041
G+ +T +FH + VIR++ R+ LKD +D V E L+ +A ++Y KLY+ ++ R
Sbjct: 163 GDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRG 222
Query: 1040 -QPYLDFFAL*TLEIQSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDS 864
P F L E +LNR E+ +A M + KAPGPD F+Q+ + V +S
Sbjct: 223 TLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGES 282
Query: 863 VTQ 855
V++
Sbjct: 283 VSK 285
Score = 25.8 bits (55), Expect(3) = 3e-57
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 1416 NRQVFGNISH*RKRYLARINRVQTPLTQYKTTYLVELEERFIQE 1285
N++VFGNI +++ ++ + VQ L +T L+ E+ ++E
Sbjct: 96 NKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKE 139
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 149 bits (375), Expect(3) = 1e-54
Identities = 71/196 (36%), Positives = 118/196 (60%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
++++ ++ I K E P FR I LCN V K+ITK+IANRIKP++ +L+ +Q +F+P
Sbjct: 489 LSDSFLALIPKIESPVCCKDFRPIGLCNTVYKMITKVIANRIKPILGELIHPSQTSFVPG 548
Query: 670 RQASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFK 491
R +NI++ +EM K K++ + +K+DL KAYD ++W F+ + ++ S+
Sbjct: 549 RNIQENIIIAKEMAFLFKKSNPKRNIMALKIDLSKAYDSLEWGFIRETLQGFNFPQSLIA 608
Query: 490 LIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGW 311
LI+ C++ + L+WNG+ + R +R DPLSPY+FVL ++ LS +I + W
Sbjct: 609 LIMDCISSPAISLIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCMERLSMLISDRIRDGSW 668
Query: 310 KVVKASRHSPSISHVF 263
K +K S +SH+F
Sbjct: 669 KPIKIS-SDLGVSHIF 683
Score = 83.6 bits (205), Expect(3) = 1e-54
Identities = 83/286 (29%), Positives = 130/286 (45%), Gaps = 6/286 (2%)
Frame = -2
Query: 1673 LCNQKWNMMFQAAVVQHLPRXXXXXXXXXXXLYGTAGKRSILWPFRLLAAWQNQTQFPDF 1494
L N +W +F V HLPR RS +PFR W F +
Sbjct: 202 LVNSEWLDLFPDTKVIHLPRTFSDHCPLLILF--NENPRSESFPFRCKEVWAYHPDFTNV 259
Query: 1493 LARTW*SSIEDLQSKINRFTSRVKTEIDKYL--EIFPIEGRDILHELIGYKPP*LNTRQP 1320
+ TW S + + F S VK+ KY+ IF + R IL L G + L+
Sbjct: 260 IEETWGSHHNSYVAARDLFLSSVKSW-SKYVFGSIFQKKKR-ILARLGGIQKS-LSIHPS 316
Query: 1319 IWWSWKKDLFRSVMIFKIRRKHVVIEI*RT*L---KEGEGSTKYFHATIVIRKKARRVTC 1149
++ S K ++ V + ++ ++ V + + K G+ +TKYFH IR R+++C
Sbjct: 317 VFLS-KLEIDLLVELNELSKQERVFWAQKAGIDRAKLGDMNTKYFHTLAKIRTCKRKISC 375
Query: 1148 LKDMDDNLVENIEHLKYMARNFYEKLYAADEYDDNR-QPYLDFFAL*TLEIQSLNRQVCE 972
LK+ + + V N E LK M + +EK++ Y R + + + L R+V E
Sbjct: 376 LKNDNHDWVSNNEDLKKMMMSHFEKIFTTSMYSHQRNNSFRGECRISDEWNKRLARRVEE 435
Query: 971 AEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDSVTQPYERSFD 834
EIK A QMA LK+PGPD + FF++ + + SV R+F+
Sbjct: 436 DEIKEALAQMAPLKSPGPDGIQAFFFKKYWEQMGPSVVSLIIRAFE 481
Score = 31.6 bits (70), Expect(3) = 1e-54
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 10/139 (7%)
Frame = -1
Query: 2091 AKGFSGGIWLFWRKSSI----------DFDTLFINNQCVTVVALTG*SAPWVLSTIYAST 1942
A G GGIWL W+ F LF + V LTG AP V+S
Sbjct: 61 AFGKRGGIWLMWKADIALVHYADYQPNHFHALFKLRSDIPEVLLTGMHAPSVVSER---- 116
Query: 1941 VEKYRRELSNYVGKIGDIMCYLGCS*GIVIKSYLIMRKKGVNRT*VRRAEPL*DAILNYQ 1762
KY +L+ G G ++ + K G + + + D I
Sbjct: 117 -NKYWVDLTEDSPPRGTPWLVAGDMNEVLHGN----EKMGGRQVGKEQGKQCKDWIAANA 171
Query: 1761 LIDLGCSGPSFT*TNSCEG 1705
L+DLG GP FT TN G
Sbjct: 172 LLDLGFQGPKFTWTNGRTG 190
>gb|EEC75227.1| hypothetical protein OsI_11496 [Oryza sativa Indica Group]
Length = 1059
Score = 144 bits (363), Expect(2) = 4e-50
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = -3
Query: 862 LLNHMNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQAN 683
+L +N+ I I K KPE++ FR I+LCNV+ KV++K + NR++P++ ++S Q+
Sbjct: 238 MLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSKCMVNRLRPILKDIISVTQSA 297
Query: 682 FIPNRQASDNIVVVQEMIRSLKWRTRK-KDAIVVKVDLEKAYDRIQWEFLEKAIETVGLS 506
FIP R +DN ++ E I ++ T K K+DL KAYDR+ W+FL A+ VG
Sbjct: 298 FIPERLITDNALIAFECIHHIQKETSAGKQFCAYKLDLAKAYDRVDWDFLRGALTKVGFC 357
Query: 505 PSIFKLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSV 326
+ + ++ CVT K + +NG LEP R LR DPLSPYLF+ LS ++ V
Sbjct: 358 STCVEWVMACVTTVKYSVSFNGNLLEPFSPSRGLRQGDPLSPYLFLFVADGLSTILSQDV 417
Query: 325 EQKGWKVVKASRHSPSISHV 266
+ + +K R +P +SH+
Sbjct: 418 QAGRLEELKVCRRAPGVSHL 437
Score = 83.6 bits (205), Expect(2) = 4e-50
Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +TK+FH R K ++T LK D VEN E +++MAR F++ LY D D
Sbjct: 103 LKEGDRNTKFFHRQAAWRSKKNKITRLKAEDSRFVENKEEMEHMAREFFQTLYLKDNSVD 162
Query: 1046 NRQPYLDFFAL*TLEIQSLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*D 879
R+ +D AL +N +C + EI A FQ+ LKAPGPD FFQRN
Sbjct: 163 PRE-LID--ALTPRVDDGMNAGLCKPFSDDEIAYALFQIGPLKAPGPDGFPARFFQRNWA 219
Query: 878 FVKDSVTQPYERSF 837
+K VT F
Sbjct: 220 VLKKEVTTAVRNFF 233
>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1853
Score = 148 bits (373), Expect(2) = 5e-50
Identities = 75/196 (38%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+NE I I KTE+P+E+ FR I+LCNVV K+++K + NR++P++ LVS+NQ+ F+P
Sbjct: 1020 VNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPG 1079
Query: 670 RQASDNIVVVQEMIRSLKWRTRKKDAI-VVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E ++ ++A K+DL KAYDR+ WEFLE+A+ +G +
Sbjct: 1080 RLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWV 1139
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
K I+ C+TL + + NG L R LR DPLSP+LF+ LS ++ V+Q
Sbjct: 1140 KWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGA 1199
Query: 313 WKVVKASRHSPSISHV 266
+ RH+P++ H+
Sbjct: 1200 MNPIHICRHAPAVLHL 1215
Score = 79.3 bits (194), Expect(2) = 5e-50
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +T++FH V R K ++T L+D DD + + L+ MA ++++L+ AD
Sbjct: 881 LKEGDRNTRFFHNKAVWRAKKNKITKLRDSDDTVHSTTKELERMATEYFQRLFTAD---- 936
Query: 1046 NRQPYLDFFAL*TL----EIQSLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFFQ 891
P +D + +L ++N ++C E EI A FQ+ LKAPGPD F+Q
Sbjct: 937 ---PSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQ 993
Query: 890 RN*DFVKDSVTQPYERSFDL 831
RN +KD + + + F L
Sbjct: 994 RNWAILKDDIVRAVQEFFSL 1013
>gb|ABF95850.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 940
Score = 143 bits (361), Expect(2) = 1e-49
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = -3
Query: 862 LLNHMNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQAN 683
+L +N+ I I K KPE++ FR I+LCNV+ KV++K + NR++P++ ++S Q+
Sbjct: 203 MLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSKCMVNRLRPILKDIISVTQSA 262
Query: 682 FIPNRQASDNIVVVQEMIRSLKWRTRK-KDAIVVKVDLEKAYDRIQWEFLEKAIETVGLS 506
FIP R +DN ++ E I ++ T K K+DL KAYDR+ W+FL A+ VG
Sbjct: 263 FIPERLITDNALIAFECIHHIQKETSAGKQFCAYKLDLAKAYDRVDWDFLRGALTKVGFC 322
Query: 505 PSIFKLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSV 326
+ + ++ CVT K + +NG LEP R LR DPLSPYLF+ LS ++ V
Sbjct: 323 STWVEWVMACVTTVKYSVSFNGNLLEPFSPSRGLRQGDPLSPYLFLFVADGLSTILSQDV 382
Query: 325 EQKGWKVVKASRHSPSISHV 266
+ + +K R +P +SH+
Sbjct: 383 QAGRLEELKVCRRAPGVSHL 402
Score = 82.8 bits (203), Expect(2) = 1e-49
Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +TK+FH R K ++T LK D VEN E +++MAR F++ LY D D
Sbjct: 68 LKEGDRNTKFFHRQAAWRSKKNKITRLKAEDSRFVENKEEMEHMAREFFQTLYLKDNSVD 127
Query: 1046 NRQPYLDFFAL*TLEIQSLNRQVCEA----EIKIAHFQMAQLKAPGPDSLSLAFFQRN*D 879
R+ +D AL +N +C+ EI A FQ+ LKAPGPD FFQRN
Sbjct: 128 PRE-LID--ALTPRVDDGMNAGLCKPFSYDEIADALFQIGPLKAPGPDGFPARFFQRNWA 184
Query: 878 FVKDSVTQPYERSF 837
+K VT F
Sbjct: 185 VLKKEVTTAVRNFF 198
>gb|EEE59033.1| hypothetical protein OsJ_10782 [Oryza sativa Japonica Group]
Length = 850
Score = 143 bits (361), Expect(2) = 1e-49
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = -3
Query: 862 LLNHMNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQAN 683
+L +N+ I I K KPE++ FR I+LCNV+ KV++K + NR++P++ ++S Q+
Sbjct: 203 MLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSKCMVNRLRPILKDIISVTQSA 262
Query: 682 FIPNRQASDNIVVVQEMIRSLKWRTRK-KDAIVVKVDLEKAYDRIQWEFLEKAIETVGLS 506
FIP R +DN ++ E I ++ T K K+DL KAYDR+ W+FL A+ VG
Sbjct: 263 FIPERLITDNALIAFECIHHIQKETSAGKQFCAYKLDLAKAYDRVDWDFLRGALTKVGFC 322
Query: 505 PSIFKLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSV 326
+ + ++ CVT K + +NG LEP R LR DPLSPYLF+ LS ++ V
Sbjct: 323 STWVEWVMACVTTVKYSVSFNGNLLEPFSPSRGLRQGDPLSPYLFLFVADGLSTILSQDV 382
Query: 325 EQKGWKVVKASRHSPSISHV 266
+ + +K R +P +SH+
Sbjct: 383 QAGRLEELKVCRRAPGVSHL 402
Score = 82.8 bits (203), Expect(2) = 1e-49
Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +TK+FH R K ++T LK D VEN E +++MAR F++ LY D D
Sbjct: 68 LKEGDRNTKFFHRQAAWRSKKNKITRLKAEDSRFVENKEEMEHMAREFFQTLYLKDNSVD 127
Query: 1046 NRQPYLDFFAL*TLEIQSLNRQVCEA----EIKIAHFQMAQLKAPGPDSLSLAFFQRN*D 879
R+ +D AL +N +C+ EI A FQ+ LKAPGPD FFQRN
Sbjct: 128 PRE-LID--ALTPRVDDGMNAGLCKPFSYDEIADALFQIGPLKAPGPDGFPARFFQRNWA 184
Query: 878 FVKDSVTQPYERSF 837
+K VT F
Sbjct: 185 VLKKEVTTAVRNFF 198
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 160 bits (404), Expect(5) = 4e-48
Identities = 85/185 (45%), Positives = 121/185 (65%)
Frame = -3
Query: 847 NEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNR 668
N+AL+ I+K KPE + FR ++LCNV+ K+ITK+I NR+K +I KL+ QANFIP R
Sbjct: 199 NDALLVLIAKVAKPERITQFRPMSLCNVLFKIITKMIVNRLKKVILKLIGPAQANFIPGR 258
Query: 667 QASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKL 488
+ DNIV+VQE + S++ + +K +++K+DLEKAYDRI+W FL++ + GLS
Sbjct: 259 LSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHR 318
Query: 487 IIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWK 308
I+ VT + +LWNG K + + R LR DPLSPYLFVL ++ L +I SV WK
Sbjct: 319 IMAGVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWK 378
Query: 307 VVKAS 293
+ S
Sbjct: 379 PMALS 383
Score = 36.6 bits (83), Expect(5) = 4e-48
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -2
Query: 1172 KKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD--NRQPYLDFFAL*TLEI 999
KK R+ KD D+ + + L+ MA N+Y +LY+ ++ N P F L E
Sbjct: 108 KKRNRIESPKDGDNRWMTDKVELETMALNYYTRLYSLEDVSAVWNMLPIGGFATLTDGEK 167
Query: 998 QSLNRQVCEAEIKIAHFQMAQLKAPGP 918
+L + E+ +A M + KA GP
Sbjct: 168 AALLKPFTSEEVVVAVKGMGRFKASGP 194
Score = 32.7 bits (73), Expect(5) = 4e-48
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -2
Query: 236 KAFTKQALVMARIMKEFCIDIGKKVNTQKSKLFTSKRIHQNM 111
+A Q L++ R++++FC G+ V+ +KSK+ S + ++M
Sbjct: 385 EASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVSRDM 426
Score = 28.1 bits (61), Expect(5) = 4e-48
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 126 NTSEHVVNILSQTFNIPYTDDLGLYLGIPIIHGRLS 19
N S + ++S I T +LG YLG+PI+ R++
Sbjct: 421 NVSRDMERLISGESGIGCTRELGKYLGMPILQKRMN 456
Score = 24.6 bits (52), Expect(5) = 4e-48
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 1416 NRQVFGNISH*RKRYLARINRVQTPLTQYKTTYLVELEERFIQE 1285
NR+VFG+I +++ +A I VQ L + L+ EE +++
Sbjct: 46 NREVFGDIHVKKEKLVADIKAVQDLLDVMHSDELLAQEEILLKD 89
>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
Length = 1888
Score = 148 bits (373), Expect(2) = 4e-45
Identities = 75/196 (38%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+NE I I KTE+P+E+ FR I+LCNVV K+++K + NR++P++ LVS+NQ+ F+P
Sbjct: 1055 VNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPG 1114
Query: 670 RQASDNIVVVQEMIRSLKWRTRKKDAI-VVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E ++ ++A K+DL KAYDR+ WEFLE+A+ +G +
Sbjct: 1115 RLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWV 1174
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
K I+ C+TL + + NG L R LR DPLSP+LF+ LS ++ V+Q
Sbjct: 1175 KWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGA 1234
Query: 313 WKVVKASRHSPSISHV 266
+ RH+P++ H+
Sbjct: 1235 MNPIHICRHAPAVLHL 1250
Score = 63.2 bits (152), Expect(2) = 4e-45
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Frame = -2
Query: 1175 RKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDDNRQPYLDFFAL*TLE-- 1002
R K ++T L+D DD + + L+ MA ++++L+ AD P +D + +L
Sbjct: 933 RAKKNKITKLRDSDDTVHSTTKELERMATEYFQRLFTAD-------PSIDHSRVTSLMKP 985
Query: 1001 --IQSLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDSVTQPYERS 840
++N ++C E EI A FQ+ LKAPGPD F+QRN +KD + + +
Sbjct: 986 KVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEF 1045
Query: 839 FDL 831
F L
Sbjct: 1046 FSL 1048
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 156 bits (394), Expect(2) = 6e-45
Identities = 75/195 (38%), Positives = 116/195 (59%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
++ LI+ I K + P FR I+LCN + K+ITK++ +R++P ++ L+ Q++F+P
Sbjct: 487 ISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPG 546
Query: 670 RQASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFK 491
R +DN +++QE++ +K RKK + K+DLEKA+D + W+FL + G I K
Sbjct: 547 RGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVK 606
Query: 490 LIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGW 311
LI+ CV+ LLWNG K+ P LR DPLSPYLF+L ++ LS I +V Q W
Sbjct: 607 LIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSW 666
Query: 310 KVVKASRHSPSISHV 266
+ + P ISH+
Sbjct: 667 EPIHIINDGPQISHL 681
Score = 54.3 bits (129), Expect(2) = 6e-45
Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 20/292 (6%)
Frame = -2
Query: 1676 GLCNQKWNMMFQAAVVQHLPRXXXXXXXXXXXLYG---TAGKRSILWPFRLLAAWQNQTQ 1506
G+ N W + F A V+ L R G T G R PFR AAW +
Sbjct: 198 GMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR----PFRFEAAWIDHYD 253
Query: 1505 FPDFLARTW*SSIED-LQSKINRFTSRVKTEIDKYLEIFPIEGR---------DILHELI 1356
+ + + R+W + + S I + + D + IF + R L +
Sbjct: 254 YGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVD 313
Query: 1355 GYKPP*LNTRQPIWWSWKKDLFRSVMIFKIRRKHVVIEI*RT*LKEGEGSTKYFHATIVI 1176
Y+ L + + + LF+ M++ + + +++ G+ +T +FHA VI
Sbjct: 314 SYRHTLLE--KELQDEYNHILFQEEMLWYQKSREQWVKL-------GDKNTAFFHAQTVI 364
Query: 1175 RKKARRVTCLK------DMDDNLVENIEHLKYMARNFY-EKLYAADEYDDNRQPYLDFFA 1017
R+K ++ L+ D N+++ E LKY + F ++ + +++ R P LD
Sbjct: 365 RRKWNKIHKLQLPNGISTSDSNILQE-EALKYFKKFFCGSQIPYSRFFNEGRHPALDDTG 423
Query: 1016 L*TLEIQSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDSV 861
SL + + E+ A M KAPGPD FF++ V D V
Sbjct: 424 K-----TSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDV 470
>gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indica Group]
Length = 1784
Score = 135 bits (341), Expect(2) = 8e-45
Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+N+ I I K E+P E+ FR I+LCNV+ KV++K + NR++P++ +LVS Q+ F+
Sbjct: 489 VNDTAIVLIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVLG 548
Query: 670 RQASDNIVVVQEMIRSL-KWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E S+ K R + A K+DL KAYDR+ W FLE+++ +G +
Sbjct: 549 RMITDNAILAFECFHSIQKNRKPESAACAYKLDLSKAYDRVDWGFLEQSLYKLGFAHRWV 608
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
+ I+ C+T + + +NG L R LR DPLSP+LF+ LS ++ V Q
Sbjct: 609 RWIMVCITTVRYSVKFNGTLLSTFAPSRGLRQGDPLSPFLFLFIADGLSLLLEDKVAQGA 668
Query: 313 WKVVKASRHSPSISHV 266
VK R +P ISH+
Sbjct: 669 LSPVKICRQAPGISHL 684
Score = 74.3 bits (181), Expect(2) = 8e-45
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 9/140 (6%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +T++FH+ V R K R+T LKD + + L+ MA +++++++AD
Sbjct: 350 LKEGDRNTRFFHSKAVWRAKKNRITKLKDREGTVHSTTAKLEDMATEYFKEVFSAD---- 405
Query: 1046 NRQPYLDFFAL*TLEIQ-----SLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFF 894
P LD + T IQ ++N +C E EI A FQ+ LKAPGPD F+
Sbjct: 406 ---PLLDQSKV-TRLIQRKVSPAMNETLCSEFKEEEISNAMFQIGPLKAPGPDGFPARFY 461
Query: 893 QRN*DFVKDSVTQPYERSFD 834
QR+ F+K+ + + + FD
Sbjct: 462 QRHWGFMKNDIVRAVKLFFD 481
Score = 135 bits (341), Expect(2) = 1e-43
Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+N+ I I K E+P E+ FR I+LCNV+ KV++K + NR++P++ +LVS Q+ F+
Sbjct: 1187 VNDTAIVLIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVLG 1246
Query: 670 RQASDNIVVVQEMIRSL-KWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E S+ K R + A K+DL KAYDR+ W FLE+++ +G +
Sbjct: 1247 RMITDNAILAFECFHSIQKNRKPESAACAYKLDLSKAYDRVDWGFLEQSLYKLGFAHRWV 1306
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
+ I+ C+T + + +NG L R LR DPLSP+LF+ LS ++ V Q
Sbjct: 1307 RWIMVCITTVRYSVKFNGTLLSTFAPSRGLRQGDPLSPFLFLFIADGLSLLLEDKVAQGA 1366
Query: 313 WKVVKASRHSPSISHV 266
VK R +P ISH+
Sbjct: 1367 LSPVKICRQAPGISHL 1382
Score = 70.5 bits (171), Expect(2) = 1e-43
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +T++FH+ V R K R+T LKD + + L+ MA +++++++AD
Sbjct: 1048 LKEGDRNTRFFHSKAVWRAKKNRITKLKDREGTVHSTTAKLEDMATEYFKEVFSAD---- 1103
Query: 1046 NRQPYLDFFAL*TLEIQ-----SLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFF 894
P LD + T IQ ++N +C E EI A FQ+ LKA GPD F+
Sbjct: 1104 ---PLLDQSKV-TRLIQRKVSPAMNETLCSEFKEEEISNAMFQIGPLKALGPDGFPARFY 1159
Query: 893 QRN*DFVKDSVTQPYERSFD 834
QR+ F+K+ + + + FD
Sbjct: 1160 QRHWGFMKNDIVRAVKLFFD 1179
>gb|EEC83406.1| hypothetical protein OsI_28856 [Oryza sativa Indica Group]
Length = 1143
Score = 136 bits (343), Expect(2) = 7e-43
Identities = 76/196 (38%), Positives = 116/196 (59%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+N I I K E+P E+ +R I+LCNVV KV++K + NR++P++ ++VS+ Q+ FI
Sbjct: 416 VNNTAIVLIPKIEQPLELKDYRPISLCNVVYKVVSKCLVNRLRPVLDEVVSEEQSAFIQG 475
Query: 670 RQASDNIVVVQEMIRSL-KWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E ++ K + K A V K+DL KAYDR+ W FLE A++ +G +
Sbjct: 476 RMITDNALLAFECFHAIQKNKVANKAACVYKLDLSKAYDRVDWRFLEMAMKRLGFAHRWV 535
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
+ II CVT + + +NG L R LR DPLS +LF+ LS ++ VEQ
Sbjct: 536 RWIISCVTSVRYSIKFNGTLLHSFAPSRGLRQGDPLSLFLFLFVADGLSLLLKGKVEQNI 595
Query: 313 WKVVKASRHSPSISHV 266
+K R++PSISH+
Sbjct: 596 LTPIKFCRNAPSISHL 611
Score = 67.0 bits (162), Expect(2) = 7e-43
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +T++FH+ V R K ++T L+D + + ++ L+ MA ++EK+Y A D
Sbjct: 277 LKEGDRNTRFFHSRAVWRAKKNKITKLRDAEGTVQKSTTVLEDMATEYFEKVYTA---DP 333
Query: 1046 NRQPYLDFFAL*TLEIQSLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFFQRN 885
N P + + +N ++C + EI A FQ+ LK+P PD F+QRN
Sbjct: 334 NLDPECVTRLIQEKVTEEMNAKLCADFNDEEIAQALFQIGPLKSPDPDGFPARFYQRN 391
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 157 bits (398), Expect(2) = 2e-42
Identities = 77/194 (39%), Positives = 121/194 (62%)
Frame = -3
Query: 844 EALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNRQ 665
+A ++ I K + PE A FR I L NV KVI+K++ NR++P++S ++ +Q +F+P R
Sbjct: 491 QAFMTLIPKKDTPETAADFRPITLLNVSFKVISKVLVNRLRPIMSNIIGPHQNSFLPGRS 550
Query: 664 ASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKLI 485
DN+++ QE++ S+ RKK +++KVDL+KAYD + W++LE+ +E G + LI
Sbjct: 551 TMDNVILTQEVVHSMNNPRRKKKQMILKVDLQKAYDSVSWDYLEETLEDFGFPRRLIDLI 610
Query: 484 IFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWKV 305
+F + + L +LWNG +L P R LR DPL+PYLF L ++ L+ I V + WK
Sbjct: 611 LFSLQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKP 670
Query: 304 VKASRHSPSISHVF 263
V +R ISH+F
Sbjct: 671 VHITRGGTGISHLF 684
Score = 44.7 bits (104), Expect(2) = 2e-42
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
++ G+ +T ++H + +I++ RV LK + ++ + L NF+ L+ + D
Sbjct: 350 IRNGDRNTTFYHRSALIKRNRNRVRFLK-LQGAWTDDADLLTEHIINFFSTLFCRVDRDS 408
Query: 1046 N--RQPYLDFFAL*TLEIQSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFV 873
RQ F + + +L R+ E+K A F M + +PGPD + F+Q+ V
Sbjct: 409 QPPRQGLPMDFQIPRDQASTLLRRASLEEVKKAVFGMKKYGSPGPDGIPAVFYQQFWGEV 468
Query: 872 KDSVTQPYERSFD 834
++T +F+
Sbjct: 469 GPAMTDMVNHAFE 481
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 133 bits (334), Expect(3) = 2e-42
Identities = 62/193 (32%), Positives = 114/193 (59%)
Frame = -3
Query: 844 EALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNRQ 665
++++ I K ++ FR I+LCNV+ K+ +K++ANR+KP + +VS+ Q+ F+P R
Sbjct: 502 DSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRL 561
Query: 664 ASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKLI 485
+D+ +V E + +++ + K +K+D+ KAYDR++W +L + +G S +
Sbjct: 562 ITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTV 621
Query: 484 IFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWKV 305
+ CV+ + + NG+ +P++ R +R DP+SPYLF+L + LS ++H +
Sbjct: 622 MRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQG 681
Query: 304 VKASRHSPSISHV 266
+K RH P ISH+
Sbjct: 682 IKNGRHGPPISHL 694
Score = 60.8 bits (146), Expect(3) = 2e-42
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
L+EG+ +T +FHA R++ R+ L D + + E +K MA FYE L+++ E D
Sbjct: 361 LREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSS-EPCD 419
Query: 1046 NRQPYLDFFAL*TLEI--QSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFV 873
+ + LD + L +Q EIK A FQM KAPGPD F+Q + +
Sbjct: 420 SMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGIL 479
Query: 872 KDSV 861
++ +
Sbjct: 480 EEHI 483
Score = 28.9 bits (63), Expect(3) = 2e-42
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 239 SKAFTKQALVMARIMKEFCIDIGKKVNTQKSKLFTSKR 126
+KA ++ + ++ +C G+K+N KS +F KR
Sbjct: 704 AKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKR 741
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 133 bits (334), Expect(3) = 2e-42
Identities = 62/193 (32%), Positives = 114/193 (59%)
Frame = -3
Query: 844 EALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNRQ 665
++++ I K ++ FR I+LCNV+ K+ +K++ANR+KP + +VS+ Q+ F+P R
Sbjct: 459 DSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRL 518
Query: 664 ASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKLI 485
+D+ +V E + +++ + K +K+D+ KAYDR++W +L + +G S +
Sbjct: 519 ITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTV 578
Query: 484 IFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWKV 305
+ CV+ + + NG+ +P++ R +R DP+SPYLF+L + LS ++H +
Sbjct: 579 MRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQG 638
Query: 304 VKASRHSPSISHV 266
+K RH P ISH+
Sbjct: 639 IKNGRHGPPISHL 651
Score = 60.8 bits (146), Expect(3) = 2e-42
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
L+EG+ +T +FHA R++ R+ L D + + E +K MA FYE L+++ E D
Sbjct: 318 LREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSS-EPCD 376
Query: 1046 NRQPYLDFFAL*TLEI--QSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFV 873
+ + LD + L +Q EIK A FQM KAPGPD F+Q + +
Sbjct: 377 SMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGIL 436
Query: 872 KDSV 861
++ +
Sbjct: 437 EEHI 440
Score = 28.9 bits (63), Expect(3) = 2e-42
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 239 SKAFTKQALVMARIMKEFCIDIGKKVNTQKSKLFTSKR 126
+KA ++ + ++ +C G+K+N KS +F KR
Sbjct: 661 AKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKR 698
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 156 bits (394), Expect(2) = 5e-42
Identities = 76/194 (39%), Positives = 120/194 (61%)
Frame = -3
Query: 844 EALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPNRQ 665
+A ++ I K + PE A FR I L N KVI+K++ NR++P++S ++ +Q +F+P R
Sbjct: 491 QAFMTLIPKKDTPETAADFRPITLLNASFKVISKVLVNRLRPIMSNIIGPHQNSFLPGRS 550
Query: 664 ASDNIVVVQEMIRSLKWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIFKLI 485
DN+++ QE++ S+ RKK +++KVDL+KAYD + W++LE+ +E G + LI
Sbjct: 551 TMDNVILTQEVVHSMNNPRRKKKQMILKVDLQKAYDSVSWDYLEETLEDFGFPRRLIDLI 610
Query: 484 IFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKGWKV 305
+F + + L +LWNG +L P R LR DPL+PYLF L ++ L+ I V + WK
Sbjct: 611 LFSLQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKP 670
Query: 304 VKASRHSPSISHVF 263
V +R ISH+F
Sbjct: 671 VHITRGGTGISHLF 684
Score = 44.7 bits (104), Expect(2) = 5e-42
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
++ G+ +T ++H + +I++ RV LK + ++ + L NF+ L+ + D
Sbjct: 350 IRNGDRNTTFYHRSALIKRNRNRVRFLK-LQGAWTDDADLLTEHIINFFSTLFCRVDRDS 408
Query: 1046 N--RQPYLDFFAL*TLEIQSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFV 873
RQ F + + +L R+ E+K A F M + +PGPD + F+Q+ V
Sbjct: 409 QPPRQGLPMDFQIPRDQASTLLRRASLEEVKKAVFGMKKYGSPGPDGIPAVFYQQFWGEV 468
Query: 872 KDSVTQPYERSFD 834
++T +F+
Sbjct: 469 GPAMTDMVNHAFE 481
>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 1936
Score = 130 bits (327), Expect(3) = 9e-42
Identities = 71/196 (36%), Positives = 110/196 (56%), Gaps = 1/196 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+N+ I I K ++P ++ +R I+LCNVV KV++K + NR++P++ LVSK Q+ FI
Sbjct: 1124 VNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQG 1183
Query: 670 RQASDNIVVVQEMIRSL-KWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E S+ K + A K+DL KAYDR+ W FLE A+ +G +
Sbjct: 1184 RMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWV 1243
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
I+ CVT + + +NG L R LR +PLSP+LF+ LS ++ V Q
Sbjct: 1244 SWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNS 1303
Query: 313 WKVVKASRHSPSISHV 266
+K R +P IS++
Sbjct: 1304 LTPLKICRQAPGISYL 1319
Score = 59.3 bits (142), Expect(3) = 9e-42
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 18/289 (6%)
Frame = -2
Query: 1673 LCNQKWNMMFQAAVVQHL--PRXXXXXXXXXXXLYGTAGKRSILWPFRLLAAWQNQTQFP 1500
+ + KW +F A V HL P + T R + ++ W+ + +
Sbjct: 836 VADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIV--WEREPESV 893
Query: 1499 DFLARTW*SS-----IEDLQSKINRFTSRVKT-------EIDKYLEIFPIEGRDILHELI 1356
+ W ++ + D+ + R S +++ + K LE + R L +LI
Sbjct: 894 QVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKTKVKNVGKELE----KARKKLEDLI 949
Query: 1355 GYKPP*LNTRQPIWWSWKKDLFRSVMIFKIRRKHVVIEI*RT*LKEGEGSTKYFHATIVI 1176
+ RQ + L+R M++ ++R V LKEG+ +T++FH+ V
Sbjct: 950 ASNAARSSIRQATD-HMNEMLYREEMLW-LQRSRV------NWLKEGDRNTRFFHSRAVW 1001
Query: 1175 RKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDDNRQPYLDFFAL*TLEIQ 996
R K +++ L+D + + L+ MA +++ +Y AD N + F
Sbjct: 1002 RAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADP-SLNPESVTRLFQ--EKVTD 1058
Query: 995 SLNRQVC----EAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVKDSV 861
++N ++C E EI A FQ+ LK+P PD F+QRN +K +
Sbjct: 1059 AMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDI 1107
Score = 30.8 bits (68), Expect(3) = 9e-42
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 1/143 (0%)
Frame = -1
Query: 2118 SFEGFICSEAKGFSGGIWLFWRKSSIDFDTLFINNQCV-TVVALTG*SAPWVLSTIYAST 1942
+F GF+ ++G SGG+ L+W S+ D IN + + V L+ W ++ +Y
Sbjct: 687 AFRGFVGVSSEGKSGGLALYW-DESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEP 745
Query: 1941 VEKYRRELSNYVGKIGDIMCYLGCS*GIVIKSYLIMRKKGVNRT*VRRAEPL*DAILNYQ 1762
+ R + + + I G ++ N + + DA+ +
Sbjct: 746 RVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCD 805
Query: 1761 LIDLGCSGPSFT*TNSCEGNWNI 1693
L DLG G T N +G N+
Sbjct: 806 LQDLGFKGVPHTYDNRRDGWRNV 828
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 152 bits (383), Expect(2) = 2e-41
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Frame = -3
Query: 859 LNHMNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANF 680
+NH N ALI K + P A FR IALCNVV K+++K + R+K + +LVS+NQ+ F
Sbjct: 488 INHTNIALIP---KVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQSAF 544
Query: 679 IPNRQASDNIVVVQEMIRSLKWRTR-KKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSP 503
+P R +DN ++ E+ S+K R R +K I +K+D+ KAYDR++W FL K + T+G
Sbjct: 545 VPGRLITDNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDG 604
Query: 502 SIFKLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVE 323
LI+ CV+ + NG + R LR DPLSPYLF+L + S+MI V+
Sbjct: 605 RWVNLIMSCVSSVSYSFIINGGVCGSVTPARGLRHGDPLSPYLFILIADAFSKMIQKKVQ 664
Query: 322 QKGWKVVKASRHSPSISHVF 263
+K KASR P ISH+F
Sbjct: 665 EKQLHGAKASRSGPVISHLF 684
Score = 47.0 bits (110), Expect(2) = 2e-41
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
+++G+ +TKYFH RKK V L D E ++ ++ + +++ ++ + D
Sbjct: 347 VRDGDRNTKYFHHKASQRKKRNFVKGLFDASGTWCEEVDDIECVFTDYFTSIFTSTNPSD 406
Query: 1046 NR--QPYLDFFAL*TLEIQS-LNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DF 876
+ + T E + L + + E+ +A QM KAPGPD + F+Q+
Sbjct: 407 VQLNDVLCCVDPVVTEECNTWLLKPFSKEELYVALSQMHPCKAPGPDGMHAIFYQKFWHI 466
Query: 875 VKDSVTQ 855
+ D VTQ
Sbjct: 467 IGDDVTQ 473
>ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group]
gi|255677700|dbj|BAH93889.1| Os07g0417700 [Oryza sativa
Japonica Group]
Length = 1011
Score = 128 bits (322), Expect(2) = 2e-41
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%)
Frame = -3
Query: 850 MNEALISWISKTEKPEEMAIFRLIALCNVVSKVITKIIANRIKPLISKLVSKNQANFIPN 671
+N I I K E+P E+ FR I+LCNV+ K ++K + NR++P++ +LVS++Q+ F+P
Sbjct: 176 VNNTAIVLIPKIEQPMEVKDFRPISLCNVLYKFVSKCLVNRLRPILDELVSQSQSAFVPG 235
Query: 670 RQASDNIVVVQEMIRSL-KWRTRKKDAIVVKVDLEKAYDRIQWEFLEKAIETVGLSPSIF 494
R +DN ++ E S+ K + + K+DL KAY+R+ W FLE+++ +G S
Sbjct: 236 RLITDNAILAFECFHSIQKNKNPNSSSCAYKLDLSKAYNRVDWTFLEQSMYKLGFSHRWV 295
Query: 493 KLIIFCVTLTKL*LLWNGKKLEPIIQQRCLR*EDPLSPYLFVLFIKSLSQMIHHSVEQKG 314
I+ C+T + + +NG L+ R LR DPLSP+L + LS ++ + V Q
Sbjct: 296 SWIMECITSVRFSVKFNGTLLDTFAPSRGLRQGDPLSPFLLLFVADGLSLLLEYKVSQGA 355
Query: 313 WKVVKASRHSPSISHVF 263
V R + ISH+F
Sbjct: 356 ITPVHICRRALGISHLF 372
Score = 70.1 bits (170), Expect(2) = 2e-41
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Frame = -2
Query: 1226 LKEGEGSTKYFHATIVIRKKARRVTCLKDMDDNLVENIEHLKYMARNFYEKLYAADEYDD 1047
LKEG+ +T++FH+ V R K + L+D + + ++ MA +++++Y AD D
Sbjct: 37 LKEGDRNTRFFHSKAVWRAKKNIIVRLRDSGGTVQNSTTVMEDMATKYFQEMYTADSTLD 96
Query: 1046 NRQPYLDFFAL*TLEI-QSLNRQVCEAEIKIAHFQMAQLKAPGPDSLSLAFFQRN*DFVK 870
+ Q T E+ +SL R+ E EI A FQ+ LKAPGPD F++RN +K
Sbjct: 97 HTQIIHLIQEKVTPEMNESLCREFSEEEIATAVFQIGPLKAPGPDGFPARFYERNWGVLK 156
Query: 869 DSVTQPYERSF 837
+ + + + F
Sbjct: 157 EDIVRVVKTFF 167