BLASTX nr result
ID: Catharanthus23_contig00001840
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00001840
(2283 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 511 e-142
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 502 e-139
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 491 e-136
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 481 e-133
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom... 478 e-132
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 476 e-131
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 474 e-131
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 471 e-130
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe... 471 e-130
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 449 e-123
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 446 e-122
emb|CAD20832.1| sigma factor [Spinacia oleracea] 425 e-116
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 408 e-111
ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr... 405 e-110
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 402 e-109
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 401 e-109
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-... 400 e-108
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A... 399 e-108
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun... 398 e-108
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 395 e-107
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
Length = 555
Score = 511 bits (1315), Expect = e-142
Identities = 289/558 (51%), Positives = 368/558 (65%), Gaps = 14/558 (2%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
MGFRL+L WG S KG EA YD A+ S I + D
Sbjct: 1 MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDPAR-SLKPFITGDCEPSHSDPF 59
Query: 1905 RDQRC-----------SFSTEVLENENTRGPSTDAYSMLHDN-VWRTTEANNLTHLTSSH 1762
R Q C S +TE+ + N RG ++ Y + + + + + T+L ++
Sbjct: 60 RVQTCLSDPQLWTSDTSVTTEI-KTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTT- 117
Query: 1761 GIKALYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXX 1582
K+L+FSLLMKNLD+LE +DSEM RLERDILVQLE+LGAL+ F T L RT
Sbjct: 118 --KSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFP 175
Query: 1581 XXXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVT 1402
+++ +++ V + KV+ T
Sbjct: 176 KVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNI 235
Query: 1401 GRQL--PTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVS 1228
L P SGKR SR +RQ+IA+NEAEMSRGVKLVA+LERIR+ +EEE G+V + S
Sbjct: 236 QEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFS 295
Query: 1227 SWALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGV 1048
SWA AAGI+ K L +++HFGW+CRDELL+STRSLVLY+A+NYRGLGVAFEDL+QAGN+GV
Sbjct: 296 SWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGV 355
Query: 1047 LQGAERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRN 868
LQGA RFDH RGYKFSTYVQYWIRKS+S LVAQHA V+IP ++ K I+QI KARK+L
Sbjct: 356 LQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSR 415
Query: 867 SNGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPE 688
S+GK P ++IAKFTGL+TA+I ASKC RVVGS+DQKVGD ISAK LE+ PD SI +PE
Sbjct: 416 SHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPE 475
Query: 687 ETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIER 508
ETV+RQ +V +Y+LL+ L+P+E+QV+ RFGL++HQ KSLEEIGRLYGVSKEW+R+IER
Sbjct: 476 ETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIER 535
Query: 507 KALTKLRKRDTFQNLSHY 454
+ALTKLR D FQ+++HY
Sbjct: 536 RALTKLRNADYFQHITHY 553
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 502 bits (1293), Expect = e-139
Identities = 285/557 (51%), Positives = 361/557 (64%), Gaps = 13/557 (2%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
MGFRL+L WG S KG E YD A+ S I+ + D
Sbjct: 1 MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDPAR-SLKPFINGDCEPSHSDPF 59
Query: 1905 RDQRC-----------SFSTEVLENENTRGPSTDAYSMLHDNVWRTTEANNLTHLTSSHG 1759
R Q C S +TE + N RG ++ Y + + T+L ++
Sbjct: 60 RVQTCLSDPQLWTSDASVTTET-KTRNGRGSPSNVYGDIGSY---KIDGEKPTYLNTT-- 113
Query: 1758 IKALYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXX 1579
K+L+FSLLMKNLD+LE +DSEM RLERDILVQLE+LGAL+ F T L RT
Sbjct: 114 -KSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPK 172
Query: 1578 XXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTG 1399
+++ +++ V + KV+ T
Sbjct: 173 VLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQ 232
Query: 1398 RQLPTLS--SGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSS 1225
L L SGKR SR +RQ+IA+NEAEMS+GVKLVA+LERIR+ +EEE GQV + SS
Sbjct: 233 EDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSS 292
Query: 1224 WALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVL 1045
WA AAGI+ K L + +HFGW+CRDELL+STRSLVLY+A+NYRGLGVAFEDL+QAGN+GVL
Sbjct: 293 WAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVL 352
Query: 1044 QGAERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNS 865
QGA RFDH RGYKFSTYVQYWIRKS+S LVAQHA V+IP ++ K I+QI KARK+L S
Sbjct: 353 QGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRS 412
Query: 864 NGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEE 685
+GK P ++IAKFTGL+TA+I ASKC RVVGS+DQKVGD I+AK LE+ PD S+ +PEE
Sbjct: 413 HGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEE 472
Query: 684 TVIRQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERK 505
V+RQ +V +Y LL+ L+P+E+QV+ RFGL++HQ KSLEEIGRLYGVSKEW+R+IER+
Sbjct: 473 FVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERR 532
Query: 504 ALTKLRKRDTFQNLSHY 454
ALTKLR D FQ+++HY
Sbjct: 533 ALTKLRSADYFQHITHY 549
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 491 bits (1265), Expect = e-136
Identities = 280/560 (50%), Positives = 355/560 (63%), Gaps = 15/560 (2%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
MGFRLNL W S++G EA +DS + SF SV E+ +L D
Sbjct: 3 MGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPF 62
Query: 1905 RDQRCSFST-EVLENENTRGPSTDAYSML-----HDNVWRTTEANNL-------THLTSS 1765
+ CS + EN+ + + +A M H ++++ A+ +
Sbjct: 63 KPFACSSGALQTFENDYS---AMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGL 119
Query: 1764 HGIKALYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXX 1585
KA FSLL++NLD+LEE +DS M+RLERDI+VQL RLGALKLFQ L RTLK
Sbjct: 120 QASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTS 179
Query: 1584 XXXXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNV 1405
+ + Q NG VDD KV+ +
Sbjct: 180 FDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKT 239
Query: 1404 T--GRQLPTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISV 1231
G P++S+ KR LNSR +R A+NEAEMS+GVKLVA LERIR +EEE+G V S+
Sbjct: 240 IRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASL 299
Query: 1230 SSWALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIG 1051
S+WA AAG+D KVL +Q+ FGW+CRDELLRST SLVLYIA+NYRG+GVAFED++QAGN+G
Sbjct: 300 SNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLG 359
Query: 1050 VLQGAERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLR 871
VLQGAERFDH +GY+FSTYVQYWIRKS+S LVA+HA VKIP +L++AI QIQKARK+L
Sbjct: 360 VLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALY 419
Query: 870 NSNGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNP 691
S+G++PD N+IAKFTGL+ AKI SA C RVVGS DQ D A LE PDTSIK+P
Sbjct: 420 KSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSP 479
Query: 690 EETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIE 511
EE ++Q +I+NLLKGL+PRERQ+L+LR+G Q KSLEEIGR + VSKEW+RK+E
Sbjct: 480 EEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLE 539
Query: 510 RKALTKLRKRDTFQNLSHYL 451
+ AL LR + QNL HY+
Sbjct: 540 KTALANLRDEEICQNLRHYV 559
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 481 bits (1239), Expect = e-133
Identities = 271/531 (51%), Positives = 346/531 (65%), Gaps = 15/531 (2%)
Frame = -1
Query: 1998 LKGNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFST-EVLENENTRGPSTDAYSML 1822
++G EA +DS + SF SV E+ +L D + CS + EN+ + + +A M
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYS---AMEAMKMK 138
Query: 1821 -----HDNVWRTTEANNL-------THLTSSHGIKALYFSLLMKNLDMLEETISDSEMIR 1678
H ++++ A+ + KA FSLL++NLD+LEE +DS M+R
Sbjct: 139 IGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVR 198
Query: 1677 LERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVDDLGRKVLX 1498
LERDI+VQL RLGALKLFQ L RTLK + + Q NG VDD KV+
Sbjct: 199 LERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVV 258
Query: 1497 XXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVT--GRQLPTLSSGKRALNSRIRRQRIARN 1324
+ G P++S+ KR LNSR +R A+N
Sbjct: 259 RSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKN 318
Query: 1323 EAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELL 1144
EAEMS+GVKLVA LERIR +EEE+G V S+S+WA AAG+D KVL +Q+ FGW+CRDELL
Sbjct: 319 EAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELL 378
Query: 1143 RSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSIS 964
RST SLVLYIA+NYRG+GVAFED++QAGN+GVLQGAERFDH +GY+FSTYVQYWIRKS+S
Sbjct: 379 RSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMS 438
Query: 963 ALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKC 784
LVA+HA VKIP +L++AI QIQKARK+L S+G++PD N+IAKFTGL+ AKI SA C
Sbjct: 439 TLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNC 498
Query: 783 SRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLL 604
RVVGS DQ D A LE PDTSIK+PEE ++Q +I+NLLKGL+PRERQ+L+
Sbjct: 499 LRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILV 558
Query: 603 LRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
LR+G Q KSLEEIGR + VSKEW+RK+E+ AL LR + QNL HY+
Sbjct: 559 LRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609
>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
Length = 848
Score = 478 bits (1230), Expect = e-132
Identities = 259/481 (53%), Positives = 339/481 (70%), Gaps = 5/481 (1%)
Frame = -1
Query: 1878 EVLENENTRGPSTDAYSMLHDNVWRTTE---ANNLTHLTSSHGIKALYFSLLMKNLDMLE 1708
E+ E + G + A+S + +T E + + TS KA ++SLLM+NLD+LE
Sbjct: 367 EIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTSPQACKASHYSLLMENLDVLE 426
Query: 1707 ETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGP 1528
ET +DS+++ LER+IL+QL R GALKLF T L RTLK +N + N
Sbjct: 427 ETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTLKASNILDLSDVPANSGDC-NMNLS 485
Query: 1527 VDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVT-GR-QLPTLSSGKRALNS 1354
VD ++ +N GR Q P +SS KR +S
Sbjct: 486 VDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDS 545
Query: 1353 RIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMH 1174
R RR RIARNEAEMS+GVK+VA LERIRT +EEE G+ S+S WA AAG+ KVL + +
Sbjct: 546 RSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLR 605
Query: 1173 FGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTY 994
FGW+CRDELLRSTRSLVLY A+NYRGLG+A EDL+QAG++GVLQGAERFDH RGY+FSTY
Sbjct: 606 FGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTY 665
Query: 993 VQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLT 814
VQ+WIRKS+S +VA+HA +++P +LS+AI QIQKARK+L S+GK+PD + IAKFTGL+
Sbjct: 666 VQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLS 725
Query: 813 TAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKG 634
AKI SA+KC RVVGS+DQK+GD ++AK+LE IPD S+++PE+TV+RQHM +I++LL G
Sbjct: 726 LAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNG 785
Query: 633 LEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHY 454
L+ RERQV++LR+GL+ KSLEEIGRL+ VSKEW+R+IE KA+ KLR ++T +NLSHY
Sbjct: 786 LDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHY 845
Query: 453 L 451
L
Sbjct: 846 L 846
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 476 bits (1224), Expect = e-131
Identities = 256/526 (48%), Positives = 363/526 (69%), Gaps = 10/526 (1%)
Frame = -1
Query: 1998 LKGNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFSTEVLENENTRGPSTDAY---- 1831
++G EA +++SF SVI EE D ++ S++ + +ENE+++G
Sbjct: 33 VRGREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSYAVQTVENEHSQGEGFKVNFGKR 92
Query: 1830 SMLHDNVWRTTEAN---NLTHLTSSHGIKALYFSLLMKNLDMLEETISDSEMIRLERDIL 1660
S N+ E + ++ SS + FSLL++NL++LE++ +DS+ +LE DIL
Sbjct: 93 SHFGLNIIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDIL 152
Query: 1659 VQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXX 1480
+QL +LGALKLF T L RTL+ + I+ NG + KV+
Sbjct: 153 LQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKE 212
Query: 1479 XXXXXXXXXXXXXXXXXXXXXKTN---VTGRQLPTLSSGKRALNSRIRRQRIARNEAEMS 1309
+ +G + PT+SSGK+A S+ RR IARNEAEM+
Sbjct: 213 ERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMA 272
Query: 1308 RGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELLRSTRS 1129
RG+K++A+LE+IRT +EEE +V+S+S WA AAG+D KVL +Q+ FGW+CRDEL++STRS
Sbjct: 273 RGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRS 332
Query: 1128 LVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSISALVAQ 949
LVLY A+NYRG G+A EDL+QAGN+GVL+GAERFDH RGY+FSTYVQYWIRKS+S +V++
Sbjct: 333 LVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSR 392
Query: 948 HANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKCSRVVG 769
A ++IP +LS+AI QIQKARK+L SNGK+PD ++IAK+TGL+ AKI SAS+C RVVG
Sbjct: 393 LARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVG 452
Query: 768 SVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGL 589
S+DQK+G+S++AK+LE +PDTS+++PEE V+RQHM+ +++NLL+ L+ RERQVL+LRFGL
Sbjct: 453 SIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGL 512
Query: 588 QSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
+Q KSLEEIGR + VSKEWVR++E++ +T+LR +T +NL HY+
Sbjct: 513 NDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYI 558
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 474 bits (1221), Expect = e-131
Identities = 260/550 (47%), Positives = 361/550 (65%), Gaps = 3/550 (0%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
MGFRLNL W S++G E ++SA++SF S I E+ + D V
Sbjct: 3 MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62
Query: 1905 RDQRCSF-STEVLENENTRGPSTDAYSMLHDNVWRTTEANNLTHLTSSHGIKALYFSLLM 1729
+ CSF +T+ +EN+ YS + ++T + S F LLM
Sbjct: 63 KAYTCSFVNTQTVEND---------YSETEEIRQKSTSCIGQDASSRSD------FRLLM 107
Query: 1728 KNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVE 1549
+NLD+LE T +DS+ +RLER+IL QL +LGALKLF ++L R +K E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164
Query: 1548 AAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVT--GRQLPTLSS 1375
+ N D K+L + G + PT+ S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224
Query: 1374 GKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNK 1195
+RALNSR RR IARNEAEMS+GV++VA LERI+T +E+E G+ S++ WA AAG+ +
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER 284
Query: 1194 VLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHER 1015
VL + + FGW+CR+EL++STR LVL++A+NYRGLG+ F DL+QAGN+GVLQGAERFDH R
Sbjct: 285 VLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
Query: 1014 GYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQI 835
GYKFSTYVQYWIRKSIS +VA+HA +KIP L++ IS+IQKARK+L NS+GK+P+ +I
Sbjct: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEI 404
Query: 834 AKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGE 655
AK+TGL+ A+I SAS+C R+VGS+DQK+GD ++AK+LE PD S+K+P+E V+RQHM +
Sbjct: 405 AKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464
Query: 654 IYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDT 475
++ +L+ L+ RERQVL+LR+GL H+ KSLEEIG+L+ VSKEW+RK+E+KA+TKLR +T
Sbjct: 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
Query: 474 FQNLSHYLYI 445
++LSH+L +
Sbjct: 525 CRDLSHFLVL 534
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 471 bits (1213), Expect = e-130
Identities = 258/550 (46%), Positives = 360/550 (65%), Gaps = 3/550 (0%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
MGFRLNL W S++G E ++SA++SF S I E+ + D V
Sbjct: 3 MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62
Query: 1905 RDQRCSF-STEVLENENTRGPSTDAYSMLHDNVWRTTEANNLTHLTSSHGIKALYFSLLM 1729
+ CSF +T+ +EN+ YS + ++T + S F LLM
Sbjct: 63 KAYTCSFVNTQTVEND---------YSETEEIRQKSTSCIGQDASSRSD------FRLLM 107
Query: 1728 KNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVE 1549
+NLD+LE T +DS+ +RLER+IL QL +LGALKLF ++L R +K E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164
Query: 1548 AAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVT--GRQLPTLSS 1375
+ + D K+L + G + PT+ S
Sbjct: 165 EQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIFS 224
Query: 1374 GKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNK 1195
+RALNSR RR IARNEAEMS+GV++VA LERI+T +E+E G+ ++ WA AAG+ +
Sbjct: 225 AERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSER 284
Query: 1194 VLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHER 1015
VL + + FGW+CR+EL++STR LVL++A+NYRGLG+ F DL+QAGN+GVLQGAERFDH R
Sbjct: 285 VLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
Query: 1014 GYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQI 835
GYKFSTYVQYWIRKSIS +VA+HA +KIP L++ IS+IQKARK+L NS+GK+P+ +I
Sbjct: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEI 404
Query: 834 AKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGE 655
AK+TGL+ A+I SAS+C R+VGS+DQK+GD ++AK+LE PD S+K+P+E V+RQHM +
Sbjct: 405 AKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464
Query: 654 IYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDT 475
++ +L+ L+ RERQVL+LR+GL H+ KSLEEIG+L+ VSKEW+RK+E+KA+TKLR +T
Sbjct: 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
Query: 474 FQNLSHYLYI 445
++LSH+L +
Sbjct: 525 CRDLSHFLVL 534
>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 471 bits (1211), Expect = e-130
Identities = 273/555 (49%), Positives = 364/555 (65%), Gaps = 10/555 (1%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXS-LKGNEAFYDSAKMSFHSVIHEERIALLGDS 1909
+GFRLNL G + ++G E ++SA++SF SVI EE A D
Sbjct: 3 LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62
Query: 1908 VRDQRC-SFSTEVLEN-----ENTRGPSTDAYSMLHDNVWRTTEANNLTHLTSSHGIKAL 1747
++ S S ++LE+ E + DN E + SS G++A
Sbjct: 63 LKVYTFPSASPQILEDGVSELEEVKTAFRRVPKSFSDNQMPVAEGKFI----SSKGLEAC 118
Query: 1746 ---YFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXX 1576
+FSLL++NL++LEET + S++++LE++IL+QL RLGALKLF L RTLK
Sbjct: 119 TASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDL 178
Query: 1575 XXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGR 1396
+ VE + D+ +++ KT G
Sbjct: 179 SDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGL 238
Query: 1395 QLPTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWAL 1216
+ PTLSSGKRA N R RR I++NEAEMS GVK++A+LERI+ +E+E G+V ++ WA
Sbjct: 239 KKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAE 298
Query: 1215 AAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGA 1036
AAG+ KVLL+ + FGW+C+DEL+RSTRSLVLY+A+NYRGLGVA +DL+QAGN+G+LQGA
Sbjct: 299 AAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGA 358
Query: 1035 ERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGK 856
ERFDH RGY+FSTYVQYWIRKS+S LVAQHA V+IP +LSKAI+QIQKARK+ NS+ K
Sbjct: 359 ERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMK 418
Query: 855 HPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVI 676
+PD +IAK TGL+ A+I SAS C RVVGSVD K+ +S ++E PDTS+K+PEETV+
Sbjct: 419 YPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVM 478
Query: 675 RQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALT 496
RQHM +I++LLKGL RERQVL+LR+GL ++ KSLEEIGRL+ VSKEW+RKIE+KAL
Sbjct: 479 RQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALM 538
Query: 495 KLRKRDTFQNLSHYL 451
KLR ++ + LSHYL
Sbjct: 539 KLRVEESHKYLSHYL 553
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 449 bits (1155), Expect = e-123
Identities = 261/551 (47%), Positives = 357/551 (64%), Gaps = 6/551 (1%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXS-LKGNEAFYDSAKMSFHSVIHEERIALLGDS 1909
+GFRLNL G S ++G E + SA +SF SVI EE D
Sbjct: 3 LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62
Query: 1908 VRDQRC-SFSTEVLENENTRGPSTDAYSMLHDNVWRTTEANNLTH----LTSSHGIKALY 1744
++ C S S ++L++ G S M + ++ AN + SS G++ +
Sbjct: 63 LKVYTCPSASPQLLDD----GLSEMEEKMNPRRMSKSGSANMIDDKEYSFMSSAGLRTSH 118
Query: 1743 FSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXX 1564
++LL++NL++LEET +DS + +LE++IL+QL RLGALKLF+ L RTLK
Sbjct: 119 YTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFLDLSDIP 178
Query: 1563 SNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQLPT 1384
+ +E + RK + K G + P
Sbjct: 179 TEPIEKHKTE-------RKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPN 231
Query: 1383 LSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGI 1204
SS +RA NSR RR +A+NEAEMS GVK++A+LER++ +E+E G+V ++ WA AAG+
Sbjct: 232 PSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGV 291
Query: 1203 DNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFD 1024
D KVL +Q+HFGW+C+DEL+RSTRSLVLY+A+NYRGLGVA +DL+QAGN+G+LQGAERFD
Sbjct: 292 DEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFD 351
Query: 1023 HERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDV 844
RGY+FSTYVQYWIRKS+S LVAQHA +KIP++LSKAI++IQKARK+ NS+ K+PD
Sbjct: 352 PSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDD 411
Query: 843 NQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHM 664
+IAK TGL+ AKI SAS+C RVVGSVD K+ + + ++E PD +++ PEE+V+RQHM
Sbjct: 412 EEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHM 471
Query: 663 VGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRK 484
+I+ LL+GL RE++VL LR+GL KSLEEIGRL+ VSKEW+RKIE+ ALTKLR
Sbjct: 472 KNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRN 531
Query: 483 RDTFQNLSHYL 451
++ +NLSHYL
Sbjct: 532 EESNKNLSHYL 542
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 446 bits (1146), Expect = e-122
Identities = 252/557 (45%), Positives = 347/557 (62%), Gaps = 10/557 (1%)
Frame = -1
Query: 2085 MGFRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSV 1906
+GFRL WG S +G EA + A++SF SV+ EE L S
Sbjct: 3 VGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSF 62
Query: 1905 RDQRCSFSTEVLENE---------NTRGPSTDAYSMLHDNVWRTTEANNLTHLTSSHGIK 1753
+ CS + + +EN+ N S + + + N + E T T
Sbjct: 63 KSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERM 122
Query: 1752 ALYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXX 1573
S L+ NLD LE+ ++D + ++LERDIL+QL RLGAL+ F L RTL+
Sbjct: 123 TSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLS 182
Query: 1572 XXXSNIVEAAQRNGPVDDL-GRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGR 1396
+ ++ +G + DL G+ V+ +
Sbjct: 183 AVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQN 242
Query: 1395 QLPTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWAL 1216
LP + KR +S RR IARNEA+M+RGVK+ ++LERIRT +EEE GQV+S+S WA
Sbjct: 243 NLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAE 302
Query: 1215 AAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGA 1036
A G+D KVL +Q+ FGW+CRDEL+++T SLVLYIA+NYRG+G+A EDL+QAGN+G+LQGA
Sbjct: 303 ATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGA 362
Query: 1035 ERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGK 856
ERFD RGY+FSTYVQYWIRKS+ +V +HA ++IP +LS++I++IQKARK+L NS+G+
Sbjct: 363 ERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGR 422
Query: 855 HPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVI 676
+PD ++AKFTGL+ AKI SA KC RVV S+DQK+G+ AK+ E IPD SI+NPEE V+
Sbjct: 423 YPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVM 482
Query: 675 RQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALT 496
RQHM EIY+LL+GL+ RE+QV++LR+G + +Q KSL EIGRL+ VSKE VRKIE+K +
Sbjct: 483 RQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMI 542
Query: 495 KLRKRDTFQNLSHYLYI 445
KLR +NLS Y+ +
Sbjct: 543 KLRDEGIRRNLSRYMIL 559
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 425 bits (1092), Expect = e-116
Identities = 229/520 (44%), Positives = 340/520 (65%), Gaps = 5/520 (0%)
Frame = -1
Query: 1995 KGNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFSTEV-LENENTRGPSTDAYSMLH 1819
+G E + SA++S ++ +E L D++R S S + +EN+ + +T +
Sbjct: 34 RGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLETTISKRSCK 93
Query: 1818 DNVWRT---TEANNLTHLTSSHGIKALYFSLLMKNLDMLEETISDSEMIRLERDILVQLE 1648
D + T ++ + ++ S A +F LM N+++LE +SDSE+++LE+DILVQL
Sbjct: 94 DLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLG 153
Query: 1647 RLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVD-DLGRKVLXXXXXXXXXX 1471
RLGAL+LF L R + I E + N D +L +K++
Sbjct: 154 RLGALQLFHACLSRIIDMSDLPGL------ITEDGKANVRKDNELKKKLVFSKRKEERKL 207
Query: 1470 XXXXXXXXXXXXXXXXXXKTNVTGRQLPTLSSGKRALNSRIRRQRIARNEAEMSRGVKLV 1291
++++ +S+ + +R RR IA+NEAEMSRG+K+V
Sbjct: 208 RQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVV 267
Query: 1290 AELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIA 1111
A+LE+++ +E+E G+ +S++ WA AAGID KVL +HFGW+CRDELL+S RSLVLY++
Sbjct: 268 AQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLS 327
Query: 1110 KNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSISALVAQHANVVK 931
+ YRGLGVA EDL+QAGNIG+LQGAERFDH RGY+FSTYVQYWIRK++S LV++H +K
Sbjct: 328 RYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIK 387
Query: 930 IPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKV 751
+P++LS I+++QKARK L+ S GKHPD +++K TGL+ KI SA C R+VGS+DQKV
Sbjct: 388 VPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKV 447
Query: 750 GDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCK 571
G I+ K+LE PDT+++ PE+TV++QHM +++ LL+ L+P+ER+VL+ R+GL+ H C
Sbjct: 448 GHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEGH-CM 506
Query: 570 SLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
SL E+G+++ VSKEW+RK+E++ALTKLR NL HYL
Sbjct: 507 SLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYL 546
>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
Length = 545
Score = 408 bits (1049), Expect = e-111
Identities = 236/523 (45%), Positives = 333/523 (63%), Gaps = 9/523 (1%)
Frame = -1
Query: 1992 GNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFSTEVLENENTRGPSTDAYSMLHDN 1813
G E F++ ++S S ++EE L D + +FS+ LE P D +L
Sbjct: 34 GREVFFNPTRLSLLSTVYEEGETLQKDF--GKTFAFSSSALEV-----PEMD---LLQGE 83
Query: 1812 VWRTTEANNLTHLTSSHGI--------KALYFSLLMKNLDMLEETISDSEMIRLERDILV 1657
V + + L+S H I +F LLM+NL +LEET +DSE +RLE+DI++
Sbjct: 84 VTKVNKGKR--SLSSVHEIIDNTQLPFGEPHFGLLMENLGILEETFADSEAMRLEKDIVL 141
Query: 1656 QLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVDDL-GRKVLXXXXXXX 1480
+LE+LGAL+LF L R+ V+ +RN VD+ G+ V+
Sbjct: 142 KLEKLGALELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKRKEN 201
Query: 1479 XXXXXXXXXXXXXXXXXXXXXKTNVTGRQLPTLSSGKRALNSRIRRQRIARNEAEMSRGV 1300
N G S KR N+ RR IA+ E EMS+GV
Sbjct: 202 RTRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQREVEMSKGV 261
Query: 1299 KLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVL 1120
K++AELE+++T +EE+ Q +S+SSWA A+G+D VL RQ++ G++CRDEL+RSTRSLVL
Sbjct: 262 KVLAELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVL 321
Query: 1119 YIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSISALVAQHAN 940
Y A+ YRG+G+A EDL+Q G IGVLQGAERFD RGY+FSTYVQYWIRKS+S +VA++A
Sbjct: 322 YFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYAR 381
Query: 939 VVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVD 760
+ IP S++KAISQIQKARK L++++ K+PD ++IAK TGL+ +I SAS C R+V S++
Sbjct: 382 GITIPWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMN 441
Query: 759 QKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGLQSH 580
QK+GD +++ + D SI++PEETV++QH+ +I+++L+ L+ RERQ+L+LRFGL H
Sbjct: 442 QKMGDR-GIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGLNDH 500
Query: 579 QCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
Q KSLE IG++Y VSKEW+RKIE+KALTKLR L++YL
Sbjct: 501 QPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYYL 543
>ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum]
gi|312281919|dbj|BAJ33825.1| unnamed protein product
[Thellungiella halophila] gi|557104759|gb|ESQ45093.1|
hypothetical protein EUTSA_v10010251mg [Eutrema
salsugineum]
Length = 562
Score = 405 bits (1041), Expect = e-110
Identities = 216/434 (49%), Positives = 302/434 (69%), Gaps = 1/434 (0%)
Frame = -1
Query: 1749 LYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXX 1570
L ++LL KNL LEET + +R+ERDI++Q+ +LGA +LF+T L R+
Sbjct: 136 LQYNLLGKNLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRSRGSSVTSCLSD 195
Query: 1569 XXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQL 1390
+ +V A + RK+ +T
Sbjct: 196 TGTELVVATEEQQTFVPSRRKL------KKKARRSSLSTGKGDQGSLLIGSRTTWNDIDA 249
Query: 1389 PTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAA 1210
P L +++ R +R+RI+RNEAEMS G K+VA++ERIRTK+EEE G+V S+S WA AA
Sbjct: 250 PRL---RKSSKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAA 306
Query: 1209 GIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAER 1030
G++ +L+R +H+GW+CRDELL+STRSLVL++++NYRGLG+A EDL+QAGN+GVLQGAER
Sbjct: 307 GMNEILLMRNLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAER 366
Query: 1029 FDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNG-KH 853
FDH RGYKFSTYVQYWIRKS+S +V++HA V IPSS+ + +SQIQKARK+L+ S+G K+
Sbjct: 367 FDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKTSHGIKY 426
Query: 852 PDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIR 673
P +I+K TG + KI +A++C +VVGS+D+KVGD + KFLE PDT++++PEE V+R
Sbjct: 427 PADEEISKETGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 486
Query: 672 QHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTK 493
Q ++++LL+GLEPRE+QV++LR+GLQ + KSLEEIG+L VSKEW+RKIER+A+ K
Sbjct: 487 QSAWRDVHDLLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAK 546
Query: 492 LRKRDTFQNLSHYL 451
LR + +NL YL
Sbjct: 547 LRDQANAENLRFYL 560
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 402 bits (1032), Expect = e-109
Identities = 213/434 (49%), Positives = 302/434 (69%), Gaps = 1/434 (0%)
Frame = -1
Query: 1749 LYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXX 1570
L ++LL KNL LEET + +R+ERDI++Q+ +LGA +LF+T L R +
Sbjct: 146 LQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSR-YRGSSITSCLS 204
Query: 1569 XXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQL 1390
+ +V+ RKV +T +
Sbjct: 205 DTTELVDTTPNQQVFVSSRRKV------KKKARRSSVTAENGDQSSLPIGLRTTWNNIDV 258
Query: 1389 PTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAA 1210
P + +R R +R+RI+RNE EMS GVK+VA++ERIRT++EEE G+V S+S WA AA
Sbjct: 259 PRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 315
Query: 1209 GIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAER 1030
G++ K+L+R +H+GW+CRDEL++STRSLVL++A+NYRG+G+A EDL+QAG +GVLQGAER
Sbjct: 316 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAER 375
Query: 1029 FDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNG-KH 853
FDH RGYKFSTYVQYWIRKS+S +V++HA V IPSS+ + I+ IQKARK+L+ S+G K+
Sbjct: 376 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 435
Query: 852 PDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIR 673
+IAK TG + KI +A++C +VVGS+D+KVGD + KFLE PDT++++PEE V+R
Sbjct: 436 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 495
Query: 672 QHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTK 493
Q +I++LL+GLEPRE+QV++LR+GLQ ++ KSLEEIG+L+ VSKEW+RKIER+A+ K
Sbjct: 496 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAK 555
Query: 492 LRKRDTFQNLSHYL 451
LR + ++L +YL
Sbjct: 556 LRDQPNAEDLRYYL 569
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
thaliana] gi|133778870|gb|ABO38775.1| At3g53920
[Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 401 bits (1030), Expect = e-109
Identities = 214/434 (49%), Positives = 301/434 (69%), Gaps = 1/434 (0%)
Frame = -1
Query: 1749 LYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXX 1570
L ++LL KNL LEET + +R+ERDI++Q+ +LGA +LF+T L R +
Sbjct: 146 LQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSR-YRGSSITSCLS 204
Query: 1569 XXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQL 1390
+ +V+ RKV +T +
Sbjct: 205 DTTELVDTTPNQQVFVSSRRKV------KKKARRSSVTAENGDQSSLPIGLRTTWNNIDV 258
Query: 1389 PTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAA 1210
P + +R R +R+RI+RNE EMS GVK+VA++ERIRT++EEE G+V S+S WA AA
Sbjct: 259 PRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 315
Query: 1209 GIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAER 1030
G++ K+L+R +H+GW+CRDEL++STRSLVL++A+NYRGLG+A EDL+QAG +GVLQGAER
Sbjct: 316 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 375
Query: 1029 FDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNG-KH 853
FDH RGYKFSTYVQYWIRKS+S +V++HA V IPSS+ + I+ IQKARK+L+ S+G K+
Sbjct: 376 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 435
Query: 852 PDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIR 673
+IAK TG + KI +A++C +VVGS+D+KVGD + KFLE PDT++++PEE V+R
Sbjct: 436 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 495
Query: 672 QHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTK 493
Q +I++LL+GLEPRE+QV++LR+GLQ ++ KSLEEIG+L VSKEW+RKIER+A+ K
Sbjct: 496 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 555
Query: 492 LRKRDTFQNLSHYL 451
LR + ++L +YL
Sbjct: 556 LRDQPNAEDLRYYL 569
>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 400 bits (1028), Expect = e-108
Identities = 241/555 (43%), Positives = 336/555 (60%), Gaps = 12/555 (2%)
Frame = -1
Query: 2079 FRLNLSWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSAKMSFHSVIHEERIALLGDSVRD 1900
FR NL WG + KG EA ++S ++SF S I EE ++ ++++
Sbjct: 5 FRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKT 64
Query: 1899 QRC------SFSTEVLENENTRGPS-TDAYSMLHDNVWRTTEA---NNLTHLTSSHGIKA 1750
C + + ++L E S + +H + T + +N + TS KA
Sbjct: 65 YTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKA 124
Query: 1749 LYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGALKLFQTYLFRTLKXXXXXXXXX 1570
F +LM+NLD+LEET ++S M+ LERDI++QL +LGAL+ F T L RTLK
Sbjct: 125 SPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSG 184
Query: 1569 XXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQL 1390
E N +D V T ++
Sbjct: 185 LPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKI 244
Query: 1389 --PTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWAL 1216
T+ S K++ NS RR +A NEAEMS GVK+VA LERIR +E+E G++ S+S WA
Sbjct: 245 HRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAE 304
Query: 1215 AAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGA 1036
AA +D K L +Q+ FG CRDELLRST SLV+++AK YR G+ EDLVQAG +GVLQG
Sbjct: 305 AASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGV 364
Query: 1035 ERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGK 856
ERFD +RG++ STY+QYWIRKS+S +VA+++ ++IP SL+KAI+QIQKARK L +S +
Sbjct: 365 ERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRR 424
Query: 855 HPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVI 676
+ D + IA+ TGL AK+ AS C +VVGS DQK+GD ++ K++E D SI++PEETV
Sbjct: 425 YSD-DDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVK 483
Query: 675 RQHMVGEIYNLLKGLEPRERQVLLLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALT 496
R+ M +I+N+L+ LE RERQVL+LR+GL + KSLEEIG+L +SKEWVRKIE+KA+T
Sbjct: 484 RKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMT 543
Query: 495 KLRKRDTFQNLSHYL 451
KL+ +T ++LSHYL
Sbjct: 544 KLKNEETVKHLSHYL 558
>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
gi|548857444|gb|ERN15250.1| hypothetical protein
AMTR_s00056p00209700 [Amborella trichopoda]
Length = 529
Score = 399 bits (1024), Expect = e-108
Identities = 232/530 (43%), Positives = 322/530 (60%), Gaps = 14/530 (2%)
Frame = -1
Query: 1998 LKGNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFSTEVLENENTRGPSTDAYSMLH 1819
+K + +SAK S SVI EE LLGD +D F ++N N+ T+ M
Sbjct: 7 VKSKQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGD--IQNANSSHDITEEMKM-- 62
Query: 1818 DNVWRTTEANNLTHL----------TSSHGIKALYFSLLMKNLDMLEETISDSEMIRLER 1669
N+ + +L + T S+ +FS L +NL+ +E I DS RLER
Sbjct: 63 -NINKNKPDASLYVIDKAELPIAEDTFSNVAGLPHFSFLFENLEKIEGIIVDSGNARLER 121
Query: 1668 DILVQLERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAA----QRNGPVDDLGRKVL 1501
+IL+ +ERLGALKLF +L RTLK Q +G + G+KV
Sbjct: 122 EILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHAMVQPMDEQADGYIVSSGKKVE 181
Query: 1500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVTGRQLPTLSSGKRALNSRIRRQRIARNE 1321
++ L+ NS+ R A++E
Sbjct: 182 RKAQRERALKKVTDEPIVCSSLKRVKKSTKSINA----ALTHKGHPGNSKSRSHLRAQSE 237
Query: 1320 AEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELLR 1141
EMSRGV+ VA+LE+IR +EE +G+ S S WA AAGI+ KVL +Q+HFGW CRD+LLR
Sbjct: 238 VEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRDKLLR 297
Query: 1140 STRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSISA 961
STR LV+Y+AK+YRG G+ FEDL+QAG++GVLQGAERFDH RGY+FSTYVQYWIRKS+SA
Sbjct: 298 STRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRKSLSA 357
Query: 960 LVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKCS 781
LVA+H+ V+IP +L+K ++Q KA+++L +G+HP +IA+FTGL+ + A+KC
Sbjct: 358 LVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLANKCL 417
Query: 780 RVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLLL 601
RV GS+DQ++GD+ A ++E+ DT I+ PE+ V++QHM I+ +L L PRE+QVL+L
Sbjct: 418 RVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQVLML 477
Query: 600 RFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
R+GL +CKSLEEIGRLY V+KEW+RKIE+ AL K+RK + NL+ +L
Sbjct: 478 RYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFL 527
>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
[Medicago truncatula]
Length = 549
Score = 398 bits (1022), Expect = e-108
Identities = 228/517 (44%), Positives = 326/517 (63%), Gaps = 3/517 (0%)
Frame = -1
Query: 1992 GNEAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFSTEVLENENTRGPSTDAYSMLHDN 1813
G E ++ ++S S ++EE L D + S + E E + +G + +
Sbjct: 42 GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRS 101
Query: 1812 VWRTTEANNLTHLTSSHGIKALYFSLLMKNLDMLEETISDSEMIRLERDILVQLERLGAL 1633
+ E + +HL +F LLM+NL +LEET +DSE +RLE++I++QLE+LGAL
Sbjct: 102 LSSVHEMIDNSHLPFEES----HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGAL 157
Query: 1632 KLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXXXXXXXXX 1453
+LF L + VE +RN VDD KV+
Sbjct: 158 ELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGS 217
Query: 1452 XXXXXXXXXXXXKTNVTG--RQLPTLSSGKRALNSRIRRQRIARNEAEMSRGVKLVAELE 1279
N R P S KRA N++ +R IA+ E EMS+GVK++AELE
Sbjct: 218 VSIAPSSRSLPLDDNQEDPLRSSPA-SFVKRASNTKNKRAVIAQREVEMSKGVKVLAELE 276
Query: 1278 RIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDELLRSTRSLVLYIAKNYR 1099
+IRT +EE+ QV+S+SSWA +G+D KVL +Q++ G++CRDEL+RSTRSLVLY A+ YR
Sbjct: 277 KIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYR 336
Query: 1098 GLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSISALVAQHANVVKIPSS 919
G+G+A EDL+Q G IGVLQGAERFD +GY+FSTYVQYWIRKS+S +VA++A + +P S
Sbjct: 337 GMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWS 396
Query: 918 LSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASKCSRVVGSVDQKVGDSI 739
++KAISQIQKARK L+N+ K+P+ +IAK TGL+ KI+SAS C R V S+ + +
Sbjct: 397 MNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI---- 452
Query: 738 SAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVLLLRFGL-QSHQCKSLE 562
+++ +PD SI++PEETV++QH+ +I+++L+ L+ RERQ+++LRFGL HQ KSLE
Sbjct: 453 --EYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLE 510
Query: 561 EIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
IG+++ VSKEW+RKIE+KALTKLR L++YL
Sbjct: 511 YIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNYYL 547
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
Length = 551
Score = 395 bits (1015), Expect = e-107
Identities = 234/532 (43%), Positives = 333/532 (62%), Gaps = 20/532 (3%)
Frame = -1
Query: 1986 EAFYDSAKMSFHSVIHEERIALLGDSVRDQRCSFST-EVLENENTRGPSTD------AYS 1828
E ++ ++SF S +EE AL D R S S E LEN++ T + S
Sbjct: 41 ETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLS 100
Query: 1827 MLHDNVWRTTEANNLTHLTSS--HGIKALYFSLLMKNLDMLEETISDSEMIRLERDILVQ 1654
+H + T S +A +F LLM+NL +LEET DSE +RLE+ I++Q
Sbjct: 101 SVHKMIDNTQMPFGEVSTVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQ 160
Query: 1653 LERLGALKLFQTYLFRTLKXXXXXXXXXXXSNIVEAAQRNGPVDDLGRKVLXXXXXXXXX 1474
L +LGAL+LF L R+L + VDD KV+
Sbjct: 161 LGKLGALELFNVCLSRSLGTSL-------------VSNYADKVDDYKDKVVVQSSKKKEN 207
Query: 1473 XXXXXXXXXXXXXXXXXXXKTNVTGRQLP-----------TLSSGKRALNSRIRRQRIAR 1327
T V+ + L + S KRA N++ +R +A+
Sbjct: 208 KTRRKREFVS----------TAVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAK 257
Query: 1326 NEAEMSRGVKLVAELERIRTKMEEEVGQVISVSSWALAAGIDNKVLLRQMHFGWHCRDEL 1147
EAEMS+GVK++AELE+IRT +EE+ +V S+S+WA A+G+D KVL + +H G++C+DEL
Sbjct: 258 REAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDEL 317
Query: 1146 LRSTRSLVLYIAKNYRGLGVAFEDLVQAGNIGVLQGAERFDHERGYKFSTYVQYWIRKSI 967
+RSTRSLVLY+A+ YRG+G+A +DL+QAG +GVLQGAERFD RGYKFSTYVQYWIRKSI
Sbjct: 318 IRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSI 377
Query: 966 SALVAQHANVVKIPSSLSKAISQIQKARKSLRNSNGKHPDVNQIAKFTGLTTAKIISASK 787
+VA++A + IP SL++AI+QIQKARK++++++ K PD +IAK TGL+ KI SAS
Sbjct: 378 LRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASN 437
Query: 786 CSRVVGSVDQKVGDSISAKFLEIIPDTSIKNPEETVIRQHMVGEIYNLLKGLEPRERQVL 607
C R+V S+DQKVGD + +++E++PD +I++PE+ V++QHM ++++LLKGL RER++L
Sbjct: 438 CLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKIL 497
Query: 606 LLRFGLQSHQCKSLEEIGRLYGVSKEWVRKIERKALTKLRKRDTFQNLSHYL 451
LRFGL +Q +SL++IG L+ VSKE +RKIE+KALTKL+ T L +YL
Sbjct: 498 TLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYL 549