BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00001677
         (6475 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   179   8e-97
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   147   2e-86
gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica...   163   1e-81
gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subc...   163   1e-81
gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Ja...   154   2e-81
gb|ABA97230.1| retrotransposon protein, putative, Ty3-gypsy subc...   173   2e-80
gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japo...   167   3e-80
ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group] g...   258   5e-78
gb|ABG22552.1| retrotransposon protein, putative, unclassified, ...   258   5e-78
gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subc...   253   4e-76
emb|CAE75940.1| B1159F04.3 [Oryza sativa Japonica Group] gi|3856...   247   5e-74
gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subc...   246   4e-73
gb|ABF98364.1| retrotransposon protein, putative, unclassified [...   241   3e-72
gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]     241   3e-72
gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-...   244   4e-71
gb|ABA93256.2| retrotransposon protein, putative, Ty3-gypsy subc...   244   4e-71
emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]         236   4e-71
gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativ...   240   5e-69
gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subc...   238   1e-68
gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]     234   2e-67

>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  179 bits (453), Expect(7) = 8e-97
 Identities = 91/192 (47%), Positives = 125/192 (65%)
 Frame = -1

Query: 2200 KDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKK 2021
            +D EKT+F+T  GTY   RMPF LKNA A F  ++  V   Q+G N+E YVDDI++KSK+
Sbjct: 1091 EDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKSKQ 1150

Query: 2020 VDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMS 1841
                 +D++E F  + +  +KLNP+KCVF V  GK   F+VS+RGIEA+P K  AI  M 
Sbjct: 1151 AFTHGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQME 1210

Query: 1840 MP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLS 1661
             P N R+VQR+ G +A L RFL++ +E   PF++ L+G  TF W  +CQ++F+ LK YL 
Sbjct: 1211 PPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLH 1270

Query: 1660 SAPLLVS*LKGK 1625
              P L S  KG+
Sbjct: 1271 EMPTLASPPKGQ 1282



 Score = 88.2 bits (217), Expect(7) = 8e-97
 Identities = 52/151 (34%), Positives = 83/151 (54%)
 Frame = -1

Query: 1402 TKTDLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKR 1223
            T  ++  R+ KW  EL  +++       +++Q LADF  E T     E E Q  V  P  
Sbjct: 1363 TNKEVAGRIAKWAMELLPFDLKYTSRTAIKSQVLADFVAEWT---PNEVEQQEEVEKP-- 1417

Query: 1222 TWVLYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALN 1043
             W+++ DG+      GA  V+ +P  +    +++  F ++NN +EYE +++++R A AL 
Sbjct: 1418 -WIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLAFPSTNNTAEYEGVLLAMRKARALG 1476

Query: 1042 MDQLIVRGDSKVVFGQVTGSFEAKEPHMKKY 950
              +LIV+ DSK+V G  + SFEAKE  M KY
Sbjct: 1477 ARRLIVKTDSKLVAGHFSKSFEAKEKTMAKY 1507



 Score = 56.6 bits (135), Expect(7) = 8e-97
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MCI+ T LNKA P    K   P        +  AG +++ FLDA
Sbjct: 1024 WLANPVLVKKANGKWRMCIDFTDLNKACP----KDDFPLPRIDQLVDATAGCELMSFLDA 1079

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 1080 YSGYH 1084



 Score = 48.5 bits (114), Expect(7) = 8e-97
 Identities = 23/67 (34%), Positives = 38/67 (56%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S VL        +  Y+ S  L   KTRYS ++K I+ +++ +RKL+ YF +H IT+ + 
Sbjct: 1296 SAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITIPSA 1355

Query: 1424 MPLQHVM 1404
             P+  V+
Sbjct: 1356 YPIGEVL 1362



 Score = 46.2 bits (108), Expect(7) = 8e-97
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = -3

Query: 2777 NAVSKEEGELSK--KL*PQGEYESFTVDVDHPDRQVRIGKMLPPHIKSVV*NTLTEXXXX 2604
            + V +++GE  K  K  P+G+ +   +D   P + + IG+ L  HI+  +   + E    
Sbjct: 900  HVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAV 959

Query: 2603 XXXXXXXXXXXXXXTAVHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKI 2424
                             H+  I SG  P  QK R  +T RQQ  +  + +LL+A +I+++
Sbjct: 960  FAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREV 1019



 Score = 37.4 bits (85), Expect(7) = 8e-97
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = -2

Query: 3204 PLVVFLEIGKYTVKQMLINTGTS-NVLFCDAIAQIGIPDSEIRPYVPPLIRFTK*SLNSS 3028
            PLVV +EI +  V+++LI+ G+S +VLF DA  ++ IP+  +     PL  F    +++ 
Sbjct: 754  PLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAI 813

Query: 3027 GVVNLPV 3007
            G ++L V
Sbjct: 814  GKISLQV 820



 Score = 33.5 bits (75), Expect(7) = 8e-97
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -1

Query: 2977 FLIIDAPSSYNGLIGRPALN*FKATASTYSLTLEVHIATGLFAI*GDHSVGYKYFL 2810
            F ++D P  YN ++GR  +N F+A      + +++    G+  + G+  V  KY L
Sbjct: 835  FDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLVARKYEL 890


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  147 bits (372), Expect(7) = 2e-86
 Identities = 80/192 (41%), Positives = 113/192 (58%)
 Frame = -1

Query: 2200 KDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKK 2021
            +D EKT+F+T  G+Y   RMPF LKNA A F  ++  V   Q+G N+E YVDDI++KSK+
Sbjct: 1091 EDEEKTSFITPFGSYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKSKQ 1150

Query: 2020 VDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMS 1841
                 +D++E F  + +  +KLNP                  E+GIEA+P K  AI  M 
Sbjct: 1151 AFTHGKDLQEMFENLRKCSVKLNP------------------EKGIEANPDKIAAIHQME 1192

Query: 1840 MP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLS 1661
             P N R+VQR+ G +A L RFL++ +E   PF++ L+G  TF W  +CQ++F+ LK YL 
Sbjct: 1193 PPRNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLH 1252

Query: 1660 SAPLLVS*LKGK 1625
              P L S  KG+
Sbjct: 1253 EMPTLASPPKGQ 1264



 Score = 85.5 bits (210), Expect(7) = 2e-86
 Identities = 51/151 (33%), Positives = 82/151 (54%)
 Frame = -1

Query: 1402 TKTDLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKR 1223
            T  ++  R+ KW  EL  +++       +++Q LADF  E T     E E Q  V  P  
Sbjct: 1345 TNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVAEWT---PNEVEQQEEVEKP-- 1399

Query: 1222 TWVLYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALN 1043
             W+++ DG+      GA  V+ +P  +    +++  F ++NN +EYE +++++R A AL 
Sbjct: 1400 -WIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLAFPSTNNTAEYEGVLLAMRKARALR 1458

Query: 1042 MDQLIVRGDSKVVFGQVTGSFEAKEPHMKKY 950
              +LIV+ DSK+V G  + SFE KE  M KY
Sbjct: 1459 ARRLIVKTDSKLVGGHFSKSFEVKEETMAKY 1489



 Score = 56.6 bits (135), Expect(7) = 2e-86
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MCI+ T LNKA P    K   P        +  AG +++ FLDA
Sbjct: 1024 WLANPVLVKKANGKWRMCIDFTDLNKACP----KDDFPLPRIDQLVDATAGCELMSFLDA 1079

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 1080 YSGYH 1084



 Score = 48.5 bits (114), Expect(7) = 2e-86
 Identities = 23/67 (34%), Positives = 38/67 (56%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S VL        +  Y+ S  L   KTRYS ++K I+ +++ +RKL+ YF +H IT+ + 
Sbjct: 1278 SAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITIPSA 1337

Query: 1424 MPLQHVM 1404
             P+  V+
Sbjct: 1338 YPIGEVL 1344



 Score = 46.2 bits (108), Expect(7) = 2e-86
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = -3

Query: 2777 NAVSKEEGELSK--KL*PQGEYESFTVDVDHPDRQVRIGKMLPPHIKSVV*NTLTEXXXX 2604
            + V +++GE  K  K  P+G+ +   +D   P + + IG+ L  HI+  +   + E    
Sbjct: 900  HVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAV 959

Query: 2603 XXXXXXXXXXXXXXTAVHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKI 2424
                             H+  I SG  P  QK R  +T RQQ  +  + +LL+A +I+++
Sbjct: 960  FAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREV 1019



 Score = 37.4 bits (85), Expect(7) = 2e-86
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = -2

Query: 3204 PLVVFLEIGKYTVKQMLINTGTS-NVLFCDAIAQIGIPDSEIRPYVPPLIRFTK*SLNSS 3028
            PLVV +EI +  V+++LI+ G+S +VLF DA  ++ IP+  +     PL  F    +++ 
Sbjct: 754  PLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAI 813

Query: 3027 GVVNLPV 3007
            G ++L V
Sbjct: 814  GKISLQV 820



 Score = 32.0 bits (71), Expect(7) = 2e-86
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 2977 FLIIDAPSSYNGLIGRPALN*FKATASTYSLTLEVHIATGLFAI*GDHSVGYKYFL 2810
            F ++D P  YN ++GR  +N F+A      + +++    G+  + G+     KY L
Sbjct: 835  FDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLAARKYEL 890


>gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
          Length = 1665

 Score =  163 bits (413), Expect(4) = 1e-81
 Identities = 83/191 (43%), Positives = 122/191 (63%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++A +D EK  F+T  G + + +MPF L  A   FQ  V     +Q+G N+E YVDDI++
Sbjct: 801  SMAKEDEEKIAFITPFGVFCYVKMPFGLITAGNTFQRTVQGALSNQLGNNVEAYVDDIVV 860

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K K  D L  D+RE F  + +  + LNP+KC F VP GK   F+VS RGIEA+P+K KAI
Sbjct: 861  KIKTGDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKAI 920

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ GC+A L RF+A++ E    F+ LLK    F W  + +++F  LK
Sbjct: 921  ENMKSPTRLKEVQKLTGCMAALSRFIARMGERGQLFFALLKKQDKFVWTQEAEKAFIALK 980

Query: 1672 AYLSSAPLLVS 1640
             YLS++P+LV+
Sbjct: 981  RYLSNSPVLVA 991



 Score =  100 bits (250), Expect(4) = 1e-81
 Identities = 53/162 (32%), Positives = 89/162 (54%)
 Frame = -1

Query: 1393 DLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWV 1214
            D+  R+ KWV ELS++++   P   +++Q L DF  + T+     P+ ++  +    TW 
Sbjct: 1080 DVVGRIAKWVVELSQFDVHFVPRTAIKSQVLIDFVADWTM-----PDNKSDNQGDNATWT 1134

Query: 1213 LYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQ 1034
            + FDG++  Q  GA F+L SP    F   +   F A+NN +EYE L+  +R  + L   +
Sbjct: 1135 MAFDGALNSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRATATLGAKR 1194

Query: 1033 LIVRGDSKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFDHI 908
            LIV+GDS++V  QV   ++     + KY + V++   +FD I
Sbjct: 1195 LIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGI 1236



 Score = 56.6 bits (135), Expect(4) = 1e-81
 Identities = 28/67 (41%), Positives = 44/67 (65%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S V+ + R +     YY S  L  AKTRY  ++K ++ +I+T+RKL+ YFQAH +TV+++
Sbjct: 1010 STVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSS 1069

Query: 1424 MPLQHVM 1404
             PL  V+
Sbjct: 1070 FPLGEVV 1076



 Score = 56.2 bits (134), Expect(4) = 1e-81
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +  AG ++L FLDA
Sbjct: 738  WLANPVMVRKANGKWRMCVDFTDLNKACP----KDHFPLPRIDQLVDSTAGCELLSFLDA 793

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 794  YSGYH 798


>gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1602

 Score =  163 bits (413), Expect(4) = 1e-81
 Identities = 83/191 (43%), Positives = 122/191 (63%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++A +D EK  F+T  G + + +MPF L  A   FQ  V     +Q+G N+E YVDDI++
Sbjct: 738  SMAKEDEEKIAFITPFGVFCYVKMPFGLITAGNTFQRTVQGALSNQLGNNVEAYVDDIVV 797

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K K  D L  D+RE F  + +  + LNP+KC F VP GK   F+VS RGIEA+P+K KAI
Sbjct: 798  KIKTGDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKAI 857

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ GC+A L RF+A++ E    F+ LLK    F W  + +++F  LK
Sbjct: 858  ENMKSPTRLKEVQKLTGCMAALSRFIARMGERGQLFFALLKKQDKFVWTQEAEKAFIALK 917

Query: 1672 AYLSSAPLLVS 1640
             YLS++P+LV+
Sbjct: 918  RYLSNSPVLVA 928



 Score =  100 bits (250), Expect(4) = 1e-81
 Identities = 53/162 (32%), Positives = 89/162 (54%)
 Frame = -1

Query: 1393 DLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWV 1214
            D+  R+ KWV ELS++++   P   +++Q L DF  + T+     P+ ++  +    TW 
Sbjct: 1017 DVVGRIAKWVVELSQFDVHFVPRTAIKSQVLIDFVADWTM-----PDNKSDNQGDNATWT 1071

Query: 1213 LYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQ 1034
            + FDG++  Q  GA F+L SP    F   +   F A+NN +EYE L+  +R  + L   +
Sbjct: 1072 MAFDGALNSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRATATLGAKR 1131

Query: 1033 LIVRGDSKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFDHI 908
            LIV+GDS++V  QV   ++     + KY + V++   +FD I
Sbjct: 1132 LIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGI 1173



 Score = 56.6 bits (135), Expect(4) = 1e-81
 Identities = 28/67 (41%), Positives = 44/67 (65%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S V+ + R +     YY S  L  AKTRY  ++K ++ +I+T+RKL+ YFQAH +TV+++
Sbjct: 947  STVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSS 1006

Query: 1424 MPLQHVM 1404
             PL  V+
Sbjct: 1007 FPLGEVV 1013



 Score = 56.2 bits (134), Expect(4) = 1e-81
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +  AG ++L FLDA
Sbjct: 675  WLANPVMVRKANGKWRMCVDFTDLNKACP----KDHFPLPRIDQLVDSTAGCELLSFLDA 730

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 731  YSGYH 735


>gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
          Length = 2079

 Score =  154 bits (390), Expect(4) = 2e-81
 Identities = 82/191 (42%), Positives = 118/191 (61%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++  +D EKT F+T  G + H +MPF L  A   FQ          +G N+E YVD I++
Sbjct: 1198 SMVKEDEEKTAFITPFGVFCHVKMPFGLITAGNTFQRT--------LGNNVEAYVDGIVV 1249

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K+K  D L  D+RE F  + +  + LNP+KC F VP GK   F+VS RGIEA+P+K KAI
Sbjct: 1250 KTKTSDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKAI 1309

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ G +A L RF+A++ E   PF+ LLK    F W  + +E+F  LK
Sbjct: 1310 ENMKSPTRLKEVQKLTGYMAALSRFVARIGEQGQPFFALLKKQDKFVWTQETKEAFITLK 1369

Query: 1672 AYLSSAPLLVS 1640
             YLS+ P+LV+
Sbjct: 1370 RYLSNPPVLVA 1380



 Score =  107 bits (268), Expect(4) = 2e-81
 Identities = 56/162 (34%), Positives = 92/162 (56%)
 Frame = -1

Query: 1393 DLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWV 1214
            D+  R+ KWV ELS++++   P   +++Q LADF  + T+     P+ ++  +    TW 
Sbjct: 1469 DVVGRIAKWVVELSQFDVHFMPQTAIKSQVLADFVADWTM-----PDNKSDNQGDNETWT 1523

Query: 1213 LYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQ 1034
            + FDG++  Q  GA  +L SP    F   +   F A+NN +EYE L+  +R A+AL + +
Sbjct: 1524 MAFDGALNSQGAGAGLILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGVKR 1583

Query: 1033 LIVRGDSKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFDHI 908
            LIV+GDS++V  QV   ++   P + KY + V++    FD I
Sbjct: 1584 LIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGI 1625



 Score = 57.8 bits (138), Expect(4) = 2e-81
 Identities = 27/67 (40%), Positives = 45/67 (67%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S+V+ + R +     YY S  L  AKTRY  ++K ++ +I+T+RKL+ YFQAH +T++++
Sbjct: 1399 SIVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAIIMTSRKLRHYFQAHRVTIVSS 1458

Query: 1424 MPLQHVM 1404
             PL  V+
Sbjct: 1459 FPLGEVV 1465



 Score = 55.8 bits (133), Expect(4) = 2e-81
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPK------KITKKIVPFTLN*PGGECCAGHKV 2251
            WLANPV+V K N +W MC++ T LNKA PK      +I + +             AG ++
Sbjct: 1135 WLANPVIVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVY----------STAGCEL 1184

Query: 2250 LCFLDAYKGYH 2218
            L FLDAY GYH
Sbjct: 1185 LSFLDAYSGYH 1195


>gb|ABA97230.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1807

 Score =  173 bits (439), Expect(4) = 2e-80
 Identities = 87/186 (46%), Positives = 122/186 (65%)
 Frame = -1

Query: 2197 DMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKKV 2018
            D  KT+F+T  G Y +  MPF LKNA A +Q M+   F  QIG N+E YVDDI++K+K+ 
Sbjct: 932  DCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDIVVKTKQK 991

Query: 2017 DILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMSM 1838
            D L  D+ E F  I    MKLNP+KC+F VP GK   F+VS+RGI+A+P+K  AI NM  
Sbjct: 992  DDLIADLEETFTSIRAFKMKLNPEKCIFGVPSGKLLGFMVSQRGIQANPEKINAILNMKP 1051

Query: 1837 P*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLSS 1658
            P + +DVQ++ GC+A L RF++++ E   PF++LLK    F W  + Q++FE  K  L++
Sbjct: 1052 PSSQKDVQKLTGCMAALSRFVSRLGEWGMPFFKLLKKTNNFQWGPEAQKAFEDFKKLLTT 1111

Query: 1657 APLLVS 1640
             P+L S
Sbjct: 1112 PPVLAS 1117



 Score = 90.5 bits (223), Expect(4) = 2e-80
 Identities = 58/160 (36%), Positives = 85/160 (53%)
 Frame = -1

Query: 1393 DLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWV 1214
            +  RR+ KW  EL   +I  +P   +++QALADF  E T      PE      +    W 
Sbjct: 1212 EANRRIAKWALELMSLDISFKPRTSIKSQALADFLAEWTECQEDMPE------EKMEYWT 1265

Query: 1213 LYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQ 1034
            ++FDGS      GA  VL SP  +  S  L   F+AS+N +EYEAL+  LR+A +L++ +
Sbjct: 1266 MHFDGSKRLTGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLSIRR 1325

Query: 1033 LIVRGDSKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFD 914
            LIVRG S++V  QV   +   + +M  Y   V++    FD
Sbjct: 1326 LIVRGYSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFD 1365



 Score = 56.6 bits (135), Expect(4) = 2e-80
 Identities = 24/60 (40%), Positives = 41/60 (68%)
 Frame = -3

Query: 1559 YYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTTMPLQHVMYKNRPHEK 1380
            Y+ S VLA +KTRY  ++K ++ ++IT RKL  YFQ+H +TV+T+ PL  +++    + +
Sbjct: 1157 YFVSEVLADSKTRYPQVQKLLYGVLITIRKLSHYFQSHSVTVVTSFPLGDILHNREANRR 1216



 Score = 52.0 bits (123), Expect(4) = 2e-80
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGG--ECCAGHKVLCFL 2239
            WLANPV+V K   +W MC++ T L K+ PK       PF L       +  AG+++L FL
Sbjct: 864  WLANPVLVRKKTGQWRMCVDYTDLYKSCPKD------PFGLPRIDQVVDSTAGYELLSFL 917

Query: 2238 DAYKGYH 2218
            D Y GYH
Sbjct: 918  DCYSGYH 924


>gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1445

 Score =  167 bits (423), Expect(4) = 3e-80
 Identities = 84/191 (43%), Positives = 123/191 (64%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++A +D EKT F+T  G   + +MPF L  A   FQ  V     +Q+G N+E YV+DI++
Sbjct: 771  SMAKEDEEKTAFITPFGVCCYVKMPFRLITAGNTFQRTVQGALSNQLGNNVEAYVNDIVV 830

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K+K  + L  D+RE F  + +  + LNP+KC F VP GK   F+VSERGIEA+P+K KAI
Sbjct: 831  KTKTSNSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLSFLVSERGIEANPEKIKAI 890

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ GC+  L RF+A++ E   PF+ LLK    F W  + +E+F  LK
Sbjct: 891  ENMKSPTRLKEVQKLTGCVVALNRFVARMGERGQPFFALLKKQDKFVWTQEAEEAFIALK 950

Query: 1672 AYLSSAPLLVS 1640
             YLS+ P+LV+
Sbjct: 951  RYLSNPPILVA 961



 Score = 92.0 bits (227), Expect(4) = 3e-80
 Identities = 47/134 (35%), Positives = 78/134 (58%)
 Frame = -1

Query: 1393 DLTRRMTKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWV 1214
            D+   + KW+ ELS++++   P   + +Q LADF  + T+     P+ ++  +  K TW 
Sbjct: 1050 DVVGCIAKWIVELSQFDVRFVPRTAIMSQVLADFVADWTI-----PDNRSNNQVDKETWT 1104

Query: 1213 LYFDGSVGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQ 1034
            + FD ++  Q  GA F+L SP    F   +   F A+NN +EYE L+  +R A+AL + +
Sbjct: 1105 MAFDDALNSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGVRR 1164

Query: 1033 LIVRGDSKVVFGQV 992
            LIV+GDS+++  QV
Sbjct: 1165 LIVKGDSELIANQV 1178



 Score = 57.8 bits (138), Expect(4) = 3e-80
 Identities = 33/65 (50%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MCI+ T LNKA P    K   P        E  AG ++L FLDA
Sbjct: 708  WLANPVMVRKANGKWRMCIDFTDLNKACP----KDHFPLPRIDQLVESTAGCELLSFLDA 763

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 764  YSGYH 768



 Score = 55.1 bits (131), Expect(4) = 3e-80
 Identities = 28/67 (41%), Positives = 43/67 (64%)
 Frame = -3

Query: 1604 SLVLCLFRNEEMIHDYYASHVLAWAKTRYSLLKKNIFTLIITTRKLKSYFQAHPITVLTT 1425
            S V+ + R +     YY S  L  AKTRY  ++K ++ +I+T RKL+ YFQAH +TV++ 
Sbjct: 980  STVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAVIMTLRKLRHYFQAHRVTVVSF 1039

Query: 1424 MPLQHVM 1404
            +PL  V+
Sbjct: 1040 IPLGEVV 1046


>ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
            gi|255680267|dbj|BAF28648.2| Os11g0617500, partial [Oryza
            sativa Japonica Group]
          Length = 627

 Score =  258 bits (658), Expect(3) = 5e-78
 Identities = 160/435 (36%), Positives = 231/435 (53%), Gaps = 12/435 (2%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF L+NA A F  +V  V   Q+G N+E YVDD+++KS+
Sbjct: 165  PADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDVVVKSR 224

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   G KLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 225  KAFDHASDLQETFDNLRAAGTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQM 284

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F W  +CQ +F +LK YL
Sbjct: 285  KPPLSVREVQKLAGRIAALNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYL 344

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYC------------VYSGMKK*YMITMQVMY*HGQKQD 1520
             S P L+S   G     LLL                + SG K  Y I+  +    G K  
Sbjct: 345  QSPPALISLAPG---SELLLYLAASPVAVSAALVQEIDSGQKPVYFISKAL---QGAKTR 398

Query: 1519 TAY*KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEI 1340
                ++                +   ++   Q          ++T R++KW  ELS +++
Sbjct: 399  YIEMEKLAYALVMASCKLKHYFQTHKVIVPSQYPLGEILWGKEVTGRLSKWAAELSPFDL 458

Query: 1339 DLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL 1160
                   +++Q LADF  E T   + EPE        K+ WV+Y DGS   +  G   VL
Sbjct: 459  HFVARTAIKSQVLADFVAEWTPALAPEPE------PVKQPWVMYSDGSWSHKGAGIAAVL 512

Query: 1159 *SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSF 980
             SP         + +F  +NN +EYEA+++ LR A AL + +L++R DSK+V G V  SF
Sbjct: 513  ISPSGVPIRYAARLQFDTTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLVAGHVDKSF 572

Query: 979  EAKEPHMKKYASLVK 935
            EAKE  MK+Y  +V+
Sbjct: 573  EAKEEGMKRYLEVVR 587



 Score = 54.3 bits (129), Expect(3) = 5e-78
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKK--ITKKIVPFTLN*PGGECCAGHKVLCFL 2239
            WLANPV+V K N +W MC++ T LNKA PK   +  +I          +  A  +++ FL
Sbjct: 99   WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFLLPRIDQLV------DLTASCELMSFL 152

Query: 2238 DAYKGYH 2218
            DAY GYH
Sbjct: 153  DAYSGYH 159



 Score = 32.0 bits (71), Expect(3) = 5e-78
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK R  +  RQQ  +  + +LL+AG+I++ID
Sbjct: 51   MHHLAVKPDAKPRKQKLRKMSADRQQAAKAEVQKLLKAGVIQEID 95


>gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 612

 Score =  258 bits (658), Expect(3) = 5e-78
 Identities = 160/435 (36%), Positives = 231/435 (53%), Gaps = 12/435 (2%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF L+NA A F  +V  V   Q+G N+E YVDD+++KS+
Sbjct: 150  PADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDVVVKSR 209

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   G KLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 210  KAFDHASDLQETFDNLRAAGTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQM 269

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F W  +CQ +F +LK YL
Sbjct: 270  KPPLSVREVQKLAGRIAALNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYL 329

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYC------------VYSGMKK*YMITMQVMY*HGQKQD 1520
             S P L+S   G     LLL                + SG K  Y I+  +    G K  
Sbjct: 330  QSPPALISLAPG---SELLLYLAASPVAVSAALVQEIDSGQKPVYFISKAL---QGAKTR 383

Query: 1519 TAY*KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEI 1340
                ++                +   ++   Q          ++T R++KW  ELS +++
Sbjct: 384  YIEMEKLAYALVMASCKLKHYFQTHKVIVPSQYPLGEILWGKEVTGRLSKWAAELSPFDL 443

Query: 1339 DLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL 1160
                   +++Q LADF  E T   + EPE        K+ WV+Y DGS   +  G   VL
Sbjct: 444  HFVARTAIKSQVLADFVAEWTPALAPEPE------PVKQPWVMYSDGSWSHKGAGIAAVL 497

Query: 1159 *SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSF 980
             SP         + +F  +NN +EYEA+++ LR A AL + +L++R DSK+V G V  SF
Sbjct: 498  ISPSGVPIRYAARLQFDTTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLVAGHVDKSF 557

Query: 979  EAKEPHMKKYASLVK 935
            EAKE  MK+Y  +V+
Sbjct: 558  EAKEEGMKRYLEVVR 572



 Score = 54.3 bits (129), Expect(3) = 5e-78
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKK--ITKKIVPFTLN*PGGECCAGHKVLCFL 2239
            WLANPV+V K N +W MC++ T LNKA PK   +  +I          +  A  +++ FL
Sbjct: 84   WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFLLPRIDQLV------DLTASCELMSFL 137

Query: 2238 DAYKGYH 2218
            DAY GYH
Sbjct: 138  DAYSGYH 144



 Score = 32.0 bits (71), Expect(3) = 5e-78
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK R  +  RQQ  +  + +LL+AG+I++ID
Sbjct: 36   MHHLAVKPDAKPRKQKLRKMSADRQQAAKAEVQKLLKAGVIQEID 80


>gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1590

 Score =  253 bits (647), Expect(3) = 4e-76
 Identities = 154/428 (35%), Positives = 228/428 (53%), Gaps = 5/428 (1%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT+F+T  GT+ H RMPF L+NA A F  +V  V G Q+G N+E YVDDI++KS+
Sbjct: 917  PLDIPKTSFITPFGTFCHLRMPFGLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSR 976

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   G+KLNP+KCVF V +GK   F+VSERGIE +P+K  AIQ M
Sbjct: 977  KAFDHAIDLQETFDSLRAAGIKLNPEKCVFGVCIGKLLGFLVSERGIEVNPEKINAIQQM 1036

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++ +VQ++ G +A L RFL++ +E   PF++ L+G   F W  +CQ +F++LK YL
Sbjct: 1037 KPPSSVHEVQKLAGRIAALSRFLSKAAERALPFFKTLRGTGKFNWTPECQAAFDELKQYL 1096

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXX 1484
             S P L+S     L   LLL            Y+    V       Q+T + ++      
Sbjct: 1097 QSPPALIS---PPLGSELLL------------YLAASPVAVSVALVQETEFGQKPVYFVS 1141

Query: 1483 XXXXXXSRTSKRTPLLCLQQCLFSMSC-----TKTDLTRRMTKWVQELSEYEIDLQPHRV 1319
                           L     + S           ++T R++KW  ELS +++       
Sbjct: 1142 EALQGAKTRYTEMEKLAYALVMASRKLKHYFQAHKEVTGRLSKWAAELSLFDLHFVARSA 1201

Query: 1318 VQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SPDNKD 1139
            +++Q LADF  E T      P      +  ++ WV+Y DGS   +  G   VL SP+   
Sbjct: 1202 IKSQVLADFVAEWT------PVLAPDTKPAEQFWVMYSDGSWSHRGAGVAAVLFSPNGVP 1255

Query: 1138 FSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAKEPHM 959
                 + +F  +NN +EYEA+++ LR A AL + +L++R DSK+V G V  SFEAKE  M
Sbjct: 1256 IRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGM 1315

Query: 958  KKYASLVK 935
            K+Y   ++
Sbjct: 1316 KRYLEAIR 1323



 Score = 53.5 bits (127), Expect(3) = 4e-76
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPK------KITKKIVPFTLN*PGGECCAGHKV 2251
            WLANPV+V K N +W MC++ T LNKA PK      +I + +          +  AG ++
Sbjct: 851  WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFSLPRIDQLV----------DSTAGCEL 900

Query: 2250 LCFLDAYKGYH 2218
            + F DAY GYH
Sbjct: 901  MSFQDAYSGYH 911



 Score = 30.4 bits (67), Expect(3) = 4e-76
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK R  +  RQ+  +  + +LL AG+I++ID
Sbjct: 803  MHDLAVKPDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEID 847


>emb|CAE75940.1| B1159F04.3 [Oryza sativa Japonica Group] gi|38567815|emb|CAE05804.2|
            OSJNBb0046K02.14 [Oryza sativa Japonica Group]
          Length = 891

 Score =  247 bits (631), Expect(3) = 5e-74
 Identities = 157/431 (36%), Positives = 234/431 (54%), Gaps = 8/431 (1%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF L+NA A F  +V  V   Q+G N+E YVDDI++KS+
Sbjct: 115  PADIPKTAFITPFGTFCHLRMPFGLRNAGATFVRLVYKVLYKQLGRNVEAYVDDIVVKSR 174

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   GMKLNP+KC F V VG+   F+VSERGIEA+P+K  AIQ M
Sbjct: 175  KAFDHAFDLQETFDNLRAAGMKLNPEKCAFGVRVGRLLGFLVSERGIEANPEKIDAIQQM 234

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F+W  +CQ +F++LK YL
Sbjct: 235  RPPSSVREVQKLEGRIAALSRFLSKAAERGLPFFKTLQGAGKFSWTTECQAAFDELKQYL 294

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXX 1484
             S P LVS   G     LLL  Y   S +     ++  ++      Q   Y         
Sbjct: 295  QSPPALVSLALG---SELLL--YLAASPV----AVSAVLVQEKESSQKPVY--------- 336

Query: 1483 XXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDL--------TRRMTKWVQELSEYEIDLQP 1328
                  +    +T  + +++  +++      L           ++KW  ELS +++    
Sbjct: 337  --FVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVTMLSKWAAELSPFDLRFVA 394

Query: 1327 HRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SPD 1148
               +++Q LADF  E T   ++EP+    V  P   WV++ DGS   +  GA  VL SP 
Sbjct: 395  RTAIKSQVLADFVAEWTPAFALEPQP---VEQP---WVMHSDGSCSHKGAGAVAVLTSPG 448

Query: 1147 NKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAKE 968
                    + +F  +NN +EYEA+++ LR A AL + +L++R DSK+V   V  SFEAKE
Sbjct: 449  GMPIRYATRLQFDTTNNTAEYEAVLLGLRKAKALGVWRLLIRTDSKLVASHVDKSFEAKE 508

Query: 967  PHMKKYASLVK 935
              MK+Y   V+
Sbjct: 509  EGMKRYLEAVR 519



 Score = 55.1 bits (131), Expect(3) = 5e-74
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKK--ITKKIVPFTLN*PGGECCAGHKVLCFL 2239
            WLANPV+V K N +W MC++ T LNKA PK   +  +I          +  AG +++ FL
Sbjct: 49   WLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFLLPRIDQLV------DSTAGCELMSFL 102

Query: 2238 DAYKGYH 2218
            D Y GYH
Sbjct: 103  DVYSGYH 109



 Score = 28.1 bits (61), Expect(3) = 5e-74
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 2522 PVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            P  +K R  +  RQ+  +  + +LL+AG+I++ID
Sbjct: 12   PRKEKLRKMSADRQEAAKAEVEKLLKAGVIQEID 45


>gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1071

 Score =  246 bits (629), Expect(2) = 4e-73
 Identities = 157/432 (36%), Positives = 228/432 (52%), Gaps = 9/432 (2%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF L+NA A F  +V  V   Q+G N+E YVDDI++KS 
Sbjct: 272  PADIPKTAFITPFGTFRHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDIVVKSC 331

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      +++E F  +   GMKLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 332  KAFDHVSNLQETFDNLPAAGMKLNPEKCVFGVHAGKLLGFLVSERGIEANPEKIDAIQQM 391

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RF+++ +E    F++ L+G   F W  +CQ +F++LK YL
Sbjct: 392  KPPSSVREVQKLAGRIAALSRFISKAAERGLSFFKTLRGAGKFNWTPECQAAFDELKQYL 451

Query: 1663 SSAPLLVS*LKG---KLWQRLLLVWYC------VYSGMKK*YMITMQVMY*HGQKQDTAY 1511
             S P L+S   G    L+    LV         + SG K  Y ++ ++    G K     
Sbjct: 452  QSPPALISPAPGIEPLLYLAASLVAVSAALVQEIESGQKPVYFVSEEL---QGAKTRYIE 508

Query: 1510 *KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEIDLQ 1331
             ++                +   ++   Q          ++T R+ KW  ELS +++   
Sbjct: 509  MEKLTYALVMASRKLKHYFQPHRVIVPSQYPLGEILRGKEVTGRLRKWAAELSPFDLHFV 568

Query: 1330 PHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SP 1151
                V++Q LADF  E T     EPE    V  P   W++Y DGS   +  G   VL SP
Sbjct: 569  ARTAVKSQVLADFVAEWTPAFVPEPEP---VEQP---WMMYSDGSWSHKGAGIAAVLTSP 622

Query: 1150 DNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAK 971
                     + +F  +NN +EYEA+++ LR   AL + +L++R DSK+V G V   FEAK
Sbjct: 623  SGVPIRYAARLQFNTTNNAAEYEAILLGLRKEKALGIRRLLIRTDSKLVAGHVDKFFEAK 682

Query: 970  EPHMKKYASLVK 935
            E  MK+Y   V+
Sbjct: 683  EEGMKRYLEAVR 694



 Score = 59.7 bits (143), Expect(2) = 4e-73
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +WCMC++ T LNKA P    K   P           AG +++ FLDA
Sbjct: 206  WLANPVLVRKSNGKWCMCVDFTDLNKACP----KDDFPLPQIDQLVNSTAGCELMSFLDA 261

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 262  YSGYH 266


>gb|ABF98364.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 790

 Score =  241 bits (616), Expect(3) = 3e-72
 Identities = 158/430 (36%), Positives = 221/430 (51%), Gaps = 7/430 (1%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF LKNA A F  +V  V   Q+G N+E YVDDI++KS+
Sbjct: 150  PADIPKTAFITPFGTFCHLRMPFGLKNAGATFARLVYKVLYKQLGRNVEAYVDDIVVKSR 209

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   GMKLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 210  KAFDHASDLQETFDNLCAAGMKLNPEKCVFGVRTGKLLGFLVSERGIEANPEKIDAIQQM 269

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F W  +CQ  F++LK YL
Sbjct: 270  KPPSSVREVQKLTGRIAVLSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAVFDELKQYL 329

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXX 1484
             S P L+S   G     LLL            Y+    V       Q+T           
Sbjct: 330  QSPPALISPASG---SELLL------------YLAASPVAVSAALVQET----------- 363

Query: 1483 XXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEIDLQPHRVVQAQA 1304
                     S + P+  + + L        ++ +     V    + +   Q H+V+    
Sbjct: 364  --------DSGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASLKLKHYFQAHKVIVPSQ 415

Query: 1303 L-------ADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SPDN 1145
                    ADF  E T   + EPE    +  P   WV+Y DGS   +  G   VL SP+ 
Sbjct: 416  YPLGEILRADFVAEWTPAFAPEPEP---IEQP---WVMYSDGSWSHKGAGVAAVLTSPNG 469

Query: 1144 KDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAKEP 965
                   + +F  +NN +EYEA+I+ LR A AL + +L++R DSK+V G V  SFEAKE 
Sbjct: 470  VPIWYAARLQFDTTNNAAEYEAIILGLRKAKALGIRRLLIRTDSKLVVGHVDKSFEAKEE 529

Query: 964  HMKKYASLVK 935
             MK+Y   V+
Sbjct: 530  GMKRYLDAVR 539



 Score = 54.3 bits (129), Expect(3) = 3e-72
 Identities = 29/65 (44%), Positives = 37/65 (56%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +   G +++ FLDA
Sbjct: 84   WLANPVLVRKSNGKWRMCVDFTDLNKACP----KDDFPLPRIDQLVDSTVGCELMSFLDA 139

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 140  YSGYH 144



 Score = 28.9 bits (63), Expect(3) = 3e-72
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK    +  RQ+  +  + +LL+AG+I++ID
Sbjct: 36   MHHLAVKPDAKPRKQKLHKMSANRQEAAKAEVKKLLKAGVIQEID 80


>gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 777

 Score =  241 bits (616), Expect(3) = 3e-72
 Identities = 158/430 (36%), Positives = 221/430 (51%), Gaps = 7/430 (1%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P D+ KT F+T  GT+ H RMPF LKNA A F  +V  V   Q+G N+E YVDDI++KS+
Sbjct: 150  PADIPKTAFITPFGTFCHLRMPFGLKNAGATFARLVYKVLYKQLGRNVEAYVDDIVVKSR 209

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   GMKLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 210  KAFDHASDLQETFDNLCAAGMKLNPEKCVFGVRTGKLLGFLVSERGIEANPEKIDAIQQM 269

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F W  +CQ  F++LK YL
Sbjct: 270  KPPSSVREVQKLTGRIAVLSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAVFDELKQYL 329

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXX 1484
             S P L+S   G     LLL            Y+    V       Q+T           
Sbjct: 330  QSPPALISPASG---SELLL------------YLAASPVAVSAALVQET----------- 363

Query: 1483 XXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEIDLQPHRVVQAQA 1304
                     S + P+  + + L        ++ +     V    + +   Q H+V+    
Sbjct: 364  --------DSGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASLKLKHYFQAHKVIVPSQ 415

Query: 1303 L-------ADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SPDN 1145
                    ADF  E T   + EPE    +  P   WV+Y DGS   +  G   VL SP+ 
Sbjct: 416  YPLGEILRADFVAEWTPAFAPEPEP---IEQP---WVMYSDGSWSHKGAGVAAVLTSPNG 469

Query: 1144 KDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAKEP 965
                   + +F  +NN +EYEA+I+ LR A AL + +L++R DSK+V G V  SFEAKE 
Sbjct: 470  VPIWYAARLQFDTTNNAAEYEAIILGLRKAKALGIRRLLIRTDSKLVVGHVDKSFEAKEE 529

Query: 964  HMKKYASLVK 935
             MK+Y   V+
Sbjct: 530  GMKRYLDAVR 539



 Score = 54.3 bits (129), Expect(3) = 3e-72
 Identities = 29/65 (44%), Positives = 37/65 (56%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +   G +++ FLDA
Sbjct: 84   WLANPVLVRKSNGKWRMCVDFTDLNKACP----KDDFPLPRIDQLVDSTVGCELMSFLDA 139

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 140  YSGYH 144



 Score = 28.9 bits (63), Expect(3) = 3e-72
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK    +  RQ+  +  + +LL+AG+I++ID
Sbjct: 36   MHHLAVKPDAKPRKQKLHKMSANRQEAAKAEVKKLLKAGVIQEID 80


>gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group]
          Length = 1647

 Score =  244 bits (623), Expect(2) = 4e-71
 Identities = 148/441 (33%), Positives = 234/441 (53%), Gaps = 6/441 (1%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++A +D EKT+F+T  G + + +MPF L      FQ  V     DQ+G N+E YVDDI++
Sbjct: 619  SMAKEDEEKTSFITPFGVFCYVKMPFGLITTGNTFQRTVQGALNDQLGNNVEAYVDDIVV 678

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K+K  D L  D+ E F  + +  + LNP+KC+  VP GK    +VS RGIEA+P+K KAI
Sbjct: 679  KTKTSDSLIDDLWETFDNLRRYRLMLNPEKCI-GVPSGKLLGLLVSGRGIEANPEKIKAI 737

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ GC+A L RF+A++ E   PF+ LLK    F W  + +E+F  LK
Sbjct: 738  ENMKSPTRLKEVQKLTGCMAALNRFIARMGERGQPFFALLKKQHKFVWTQEAEEAFIALK 797

Query: 1672 AYLSSAPLLVS*LKG-KLWQRLLLVWYCVYSGMKK*YMITMQVMY-----*HGQKQDTAY 1511
             YLS+ P+LV+     +L+  +    Y V + +        +++Y      H  K     
Sbjct: 798  RYLSNPPVLVAPQPNEELFLYIAATPYSVITVIVVEREKVQRLVYYVSEALHDAKTRYPL 857

Query: 1510 *KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEIDLQ 1331
             ++                +   +  +   L        D+  R+ KWV ELS++++   
Sbjct: 858  IRKLLYAVIMTSRKLRHYFQAQRVTVVSYFLLGEVVRNKDIVGRIAKWVVELSQFDVHFV 917

Query: 1330 PHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SP 1151
            P   ++ Q LADF  + T+     PE ++  +    TW + FDG++  Q  GA F+L SP
Sbjct: 918  PRTAIKYQVLADFVADWTM-----PENRSDNQTDNETWTMVFDGALNSQGAGAGFILTSP 972

Query: 1150 DNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAK 971
                F       F A+NN +EYE L+  +R+A+AL + +LIV+GDS++V  QV   ++  
Sbjct: 973  SRDQFKHAFHLNFRATNNTAEYEGLLAGIRVATALGVKRLIVKGDSELVANQVHKDYKCS 1032

Query: 970  EPHMKKYASLVKEE*ISFDHI 908
             P + KY + V++    FD I
Sbjct: 1033 SPELSKYLAEVRKLEKIFDGI 1053



 Score = 55.5 bits (132), Expect(2) = 4e-71
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +  AG ++L FLDA
Sbjct: 556  WLANPVMVRKANGKWRMCVDFTDLNKASP----KDHFPLPRIDHLVDSTAGCELLSFLDA 611

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 612  YSGYH 616


>gb|ABA93256.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1371

 Score =  244 bits (623), Expect(2) = 4e-71
 Identities = 148/441 (33%), Positives = 234/441 (53%), Gaps = 6/441 (1%)
 Frame = -1

Query: 2212 AIAPKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIIL 2033
            ++A +D EKT+F+T  G + + +MPF L      FQ  V     DQ+G N+E YVDDI++
Sbjct: 619  SMAKEDEEKTSFITPFGVFCYVKMPFGLITTGNTFQRTVQGALNDQLGNNVEAYVDDIVV 678

Query: 2032 KSKKVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAI 1853
            K+K  D L  D+ E F  + +  + LNP+KC+  VP GK    +VS RGIEA+P+K KAI
Sbjct: 679  KTKTSDSLIDDLWETFDNLRRYRLMLNPEKCI-GVPSGKLLGLLVSGRGIEANPEKIKAI 737

Query: 1852 QNMSMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLK 1673
            +NM  P  +++VQ++ GC+A L RF+A++ E   PF+ LLK    F W  + +E+F  LK
Sbjct: 738  ENMKSPTRLKEVQKLTGCMAALNRFIARMGERGQPFFALLKKQHKFVWTQEAEEAFIALK 797

Query: 1672 AYLSSAPLLVS*LKG-KLWQRLLLVWYCVYSGMKK*YMITMQVMY-----*HGQKQDTAY 1511
             YLS+ P+LV+     +L+  +    Y V + +        +++Y      H  K     
Sbjct: 798  RYLSNPPVLVAPQPNEELFLYIAATPYSVITVIVVEREKVQRLVYYVSEALHDAKTRYPL 857

Query: 1510 *KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQELSEYEIDLQ 1331
             ++                +   +  +   L        D+  R+ KWV ELS++++   
Sbjct: 858  IRKLLYAVIMTSRKLRHYFQAQRVTVVSYFLLGEVVRNKDIVGRIAKWVVELSQFDVHFV 917

Query: 1330 PHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*GARFVL*SP 1151
            P   ++ Q LADF  + T+     PE ++  +    TW + FDG++  Q  GA F+L SP
Sbjct: 918  PRTAIKYQVLADFVADWTM-----PENRSDNQTDNETWTMVFDGALNSQGAGAGFILTSP 972

Query: 1150 DNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQVTGSFEAK 971
                F       F A+NN +EYE L+  +R+A+AL + +LIV+GDS++V  QV   ++  
Sbjct: 973  SRDQFKHAFHLNFRATNNTAEYEGLLAGIRVATALGVKRLIVKGDSELVANQVHKDYKCS 1032

Query: 970  EPHMKKYASLVKEE*ISFDHI 908
             P + KY + V++    FD I
Sbjct: 1033 SPELSKYLAEVRKLEKIFDGI 1053



 Score = 55.5 bits (132), Expect(2) = 4e-71
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +  AG ++L FLDA
Sbjct: 556  WLANPVMVRKANGKWRMCVDFTDLNKASP----KDHFPLPRIDHLVDSTAGCELLSFLDA 611

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 612  YSGYH 616


>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]
          Length = 1154

 Score =  236 bits (602), Expect(3) = 4e-71
 Identities = 157/440 (35%), Positives = 228/440 (51%), Gaps = 17/440 (3%)
 Frame = -1

Query: 2203 PKDMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSK 2024
            P  + KT F+T  GT+ H RMPF L+NA A F  +V  V   Q+G N+E YVDDI++KS+
Sbjct: 626  PAHIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDIVVKSR 685

Query: 2023 KVDILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNM 1844
            K      D++E F  +   GMKLNP+KCVF V  GK   F+VSERGIEA+P+K  AIQ M
Sbjct: 686  KAFDHVSDLQETFDNLRVAGMKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQM 745

Query: 1843 SMP*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYL 1664
              P ++R+VQ++ G +A L RFL++ +E   PF++ L+G   F+W  +CQ +F+++K Y 
Sbjct: 746  KPPSSVREVQKLAGQIAALSRFLSKAAERGLPFFKTLRGAGKFSWTPECQAAFDEVKQYP 805

Query: 1663 SSAPLLVS*LKGKLWQRLLLVWYC------------VYSGMKK*YMIT-----MQVMY*H 1535
             S P LVS     L   LLL                  SG K  Y I+      ++ Y  
Sbjct: 806  QSPPTLVS---PALGSELLLYLAASPVAVSAALVQETESGQKPVYFISEALQGAKLRYIE 862

Query: 1534 GQKQDTAY*KRTXXXXXXXXXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTRRMTKWVQEL 1355
             +K   A    +                + PL               ++T  ++KWV EL
Sbjct: 863  MEKFTYALVMASRKLKHYFQAHKVTVPSQYPL--------GEVLRGKEITGWLSKWVAEL 914

Query: 1354 SEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGSVGQQY*G 1175
            S +++       +++Q LADF  + T   + E E    V  P   WV+Y D S   +  G
Sbjct: 915  SPFDLHFVARTAIKSQVLADFVAKWTPAFASETEP---VEQP---WVMYSDSSWSHKGAG 968

Query: 1174 ARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGDSKVVFGQ 995
            A  VL SP         + +F  +NN +EY+A+++ LR A AL + +L++R DSK V   
Sbjct: 969  AVAVLTSPGGMLIRYAARLQFDTTNNTAEYKAVLLGLRKAKALGVRRLLIRTDSKRVASL 1028

Query: 994  VTGSFEAKEPHMKKYASLVK 935
            +  SFEAKE  MK+Y   ++
Sbjct: 1029 LDKSFEAKEEGMKRYLEAIR 1048



 Score = 55.8 bits (133), Expect(3) = 4e-71
 Identities = 30/65 (46%), Positives = 38/65 (58%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGGECCAGHKVLCFLDA 2233
            WLANPV+V K N +W MC++ T LNKA P    K   P        +  AG +++ FLDA
Sbjct: 560  WLANPVLVRKSNGKWRMCVDFTDLNKACP----KDDFPLPRIDQLVDSTAGCELMSFLDA 615

Query: 2232 YKGYH 2218
            Y GYH
Sbjct: 616  YSGYH 620



 Score = 28.9 bits (63), Expect(3) = 4e-71
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 2555 VHSQEIPSGTPPVIQKERTFTTQRQQVIRDSMSELLEAGIIKKID 2421
            +H   +     P  QK R  +  RQ+  +  + +LL+ G+I++ID
Sbjct: 512  MHYLAVKPDAKPRKQKLRKMSVDRQEAAKAEVQKLLKTGVIQEID 556


>gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativa Japonica Group]
            gi|31433656|gb|AAP55140.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1099

 Score =  240 bits (612), Expect(2) = 5e-69
 Identities = 155/454 (34%), Positives = 237/454 (52%), Gaps = 26/454 (5%)
 Frame = -1

Query: 2197 DMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKKV 2018
            D  KT+F+T  G Y +  MPF LKNA A +Q M+   F  QIG N+E YVDD+++K+K+ 
Sbjct: 193  DCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 252

Query: 2017 DILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMSM 1838
            D L  D+ E F  I    MKLNP+KC+F VP GK   F+VS+RGI+A+P+K  AI NM  
Sbjct: 253  DDLIADLEETFTSIRAFKMKLNPEKCIFGVPSGKLLGFMVSQRGIQANPEKINAILNMKP 312

Query: 1837 P*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLSS 1658
            P + +DVQ++ GC+A L RF++++ E   PF++LLK    F W  + Q++FE  K  L++
Sbjct: 313  PSSQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKELLTT 372

Query: 1657 APLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXXXX 1478
             P+L S       Q  LL++    S +    ++         ++++  + ++        
Sbjct: 373  PPVLAS----PHPQEPLLLYVSATSQVVSTVLVV--------EREEEGHIQKVQRPIYFV 420

Query: 1477 XXXXSRTSKRTPLLCLQQCLFSMSCTKTDLT--------------------------RRM 1376
                + +  R P   +Q+ L+ +  T   L+                          RR+
Sbjct: 421  SEVLADSKTRYPQ--VQKLLYGVLITVRKLSHYFQSHSVTVVTSFPLGDILHNREANRRI 478

Query: 1375 TKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGS 1196
             KW  EL   +I  +P  ++++QALADF  E T      PE      +    W ++FDGS
Sbjct: 479  AKWALELMSLDISFKPRTLIKSQALADFLAEWTKCQEDMPE------EKMEYWTMHFDGS 532

Query: 1195 VGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGD 1016
                  GA  VL SP  +  S  L   F+AS+N +EYEAL+  LR+A +L++ +LIVRGD
Sbjct: 533  KRLTGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLSIRRLIVRGD 592

Query: 1015 SKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFD 914
            S++V  QV   +   + +M  Y   V++    FD
Sbjct: 593  SQLVVNQVMQEWSCLDDNMTAYRQEVRKLEDKFD 626



 Score = 52.4 bits (124), Expect(2) = 5e-69
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGG--ECCAGHKVLCFL 2239
            WLANPV+V K   +W MC++ T LNK+ PK       PF L       +  AG ++L FL
Sbjct: 125  WLANPVLVRKKTGQWRMCVDYTDLNKSCPKD------PFGLPRIDQVVDSTAGCELLSFL 178

Query: 2238 DAYKGYH 2218
            D Y GYH
Sbjct: 179  DCYLGYH 185


>gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1032

 Score =  238 bits (607), Expect(2) = 1e-68
 Identities = 154/454 (33%), Positives = 232/454 (51%), Gaps = 26/454 (5%)
 Frame = -1

Query: 2197 DMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKKV 2018
            D  KT+F+T  G Y +  MPF LKNA A +QHM+   F  QIG N+E YVDD+++K+K+ 
Sbjct: 126  DCLKTSFITPFGAYCYVTMPFGLKNAGATYQHMIQRCFSTQIGRNVEAYVDDVVVKTKQK 185

Query: 2017 DILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMSM 1838
            D L  D+ E FV I    MKLNP+KC F +P GK   F+VS RGI+A+P+K  AI NM  
Sbjct: 186  DDLISDLEETFVSIRAFRMKLNPEKCTFGIPSGKLLGFMVSHRGIQANPEKVTAILNMKP 245

Query: 1837 P*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLSS 1658
            P   +DVQ++ GC+A L RF++++ E   PF++LLK    F W  + Q++FE  K  L+ 
Sbjct: 246  PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTE 305

Query: 1657 APLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXXXX 1478
             P+L S       Q  LL++    S +    ++         ++++  + ++        
Sbjct: 306  PPVLAS----PHPQEPLLLYVSATSQVVSTVLVV--------EREEEGHVQKVQRPIYFV 353

Query: 1477 XXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTR--------------------------RM 1376
                + +  R P   +Q+ L+ +  T   L+                           R+
Sbjct: 354  SEALADSKTRYPQ--VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLSDILHNREANGRI 411

Query: 1375 TKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGS 1196
             KW  EL   +I  +P   +++QALADF  E T      P       +    W ++FDGS
Sbjct: 412  AKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTP------AEKMEHWTMHFDGS 465

Query: 1195 VGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGD 1016
                  GA  VL SP  +  S  L   F+AS+N +EYEAL+  LR+A++L + +LIVRGD
Sbjct: 466  KRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIANSLGIKRLIVRGD 525

Query: 1015 SKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFD 914
            S++V  QV   +   + +M  Y   V++    FD
Sbjct: 526  SQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFD 559



 Score = 53.1 bits (126), Expect(2) = 1e-68
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGG--ECCAGHKVLCFL 2239
            WLANPV+V K   +W MC++ T LNK+ PK       PF L       +  AG ++L FL
Sbjct: 58   WLANPVLVRKKTGQWRMCVDYTDLNKSCPKD------PFGLPRIDQVVDSTAGCELLSFL 111

Query: 2238 DAYKGYH 2218
            D Y GYH
Sbjct: 112  DCYSGYH 118


>gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1799

 Score =  234 bits (598), Expect(2) = 2e-67
 Identities = 153/454 (33%), Positives = 230/454 (50%), Gaps = 26/454 (5%)
 Frame = -1

Query: 2197 DMEKTTFVTNDGTYYHTRMPFVLKNAQAEFQHMVNDVFGDQIG*NMEVYVDDIILKSKKV 2018
            D  KT+F+T  G Y +  MPF LKNA A +Q M+   F  QIG N+E YVDD+++K+K+ 
Sbjct: 893  DCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQK 952

Query: 2017 DILPQDMREKFVKIWQVGMKLNPKKCVFNVPVGKCSRFIVSERGIEADPKKKKAIQNMSM 1838
            D L  D+ E F  I    MKLNP+KC F VP GK   F+VS RGI+A+P+K  AI NM  
Sbjct: 953  DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1012

Query: 1837 P*NMRDVQRIFGCLAYLGRFLAQVSENFWPFYQLLKGGRTFTWNMKCQESFEQLKAYLSS 1658
            P   +DVQ++ GC+A L RF++++ E   PF++LLK    F W  + Q++FE  K +L+ 
Sbjct: 1013 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTE 1072

Query: 1657 APLLVS*LKGKLWQRLLLVWYCVYSGMKK*YMITMQVMY*HGQKQDTAY*KRTXXXXXXX 1478
             P+L S       Q  LL++    S +    ++         ++++  + ++        
Sbjct: 1073 PPVLAS----PHPQEPLLLYVSATSQVVSTVLVV--------EREEEGHVQKVQRPIYFV 1120

Query: 1477 XXXXSRTSKRTPLLCLQQCLFSMSCTKTDLTR--------------------------RM 1376
                + +  R P   +Q+ L+ +  T   L+                           R+
Sbjct: 1121 SEVLADSKTRYPQ--VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRI 1178

Query: 1375 TKWVQELSEYEIDLQPHRVVQAQALADFDVENTLLSSMEPEAQT*VRDPKRTWVLYFDGS 1196
             KW  EL   +I  +P   +++QALADF  E T      P       +    W ++FDGS
Sbjct: 1179 AKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTP------AEKMEHWTMHFDGS 1232

Query: 1195 VGQQY*GARFVL*SPDNKDFSCTLKYEFTASNNESEYEALIVSLRMASALNMDQLIVRGD 1016
                  GA  VL SP  +  S  L   F+AS+N +EYEAL+  LR+A +L + +LIVRGD
Sbjct: 1233 KRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGD 1292

Query: 1015 SKVVFGQVTGSFEAKEPHMKKYASLVKEE*ISFD 914
            S++V  QV   +   + +M  Y   V++    FD
Sbjct: 1293 SQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFD 1326



 Score = 52.8 bits (125), Expect(2) = 2e-67
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -2

Query: 2412 WLANPVVVPKHNREWCMCINCTGLNKAIPKKITKKIVPFTLN*PGG--ECCAGHKVLCFL 2239
            WLANPV+V K   +W MC++ T LNK  PK       PF L       +  AG ++L FL
Sbjct: 825  WLANPVLVRKKTGQWRMCVDYTDLNKCCPKD------PFGLPRIDQVVDSTAGCELLSFL 878

Query: 2238 DAYKGYH 2218
            D Y GYH
Sbjct: 879  DCYSGYH 885