BLASTX nr result
ID: Catharanthus23_contig00001590
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00001590
(4778 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 102 7e-53
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 94 1e-52
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 90 2e-50
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 88 9e-49
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 89 2e-48
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 86 8e-46
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 95 5e-43
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 86 2e-42
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 77 3e-42
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 81 5e-40
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 97 6e-40
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 87 2e-39
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 88 1e-37
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 92 6e-36
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 81 8e-36
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 89 6e-35
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 87 1e-33
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 87 1e-33
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 85 4e-33
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 85 1e-31
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 102 bits (253), Expect(4) = 7e-53
Identities = 49/99 (49%), Positives = 63/99 (63%)
Frame = +1
Query: 2965 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 3144
SP C K+DI K YDS EW+F+E ++ FGFP+ FV W+ CV + YS+ +NG F
Sbjct: 576 SPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPF 635
Query: 3145 PGRKGLCQGNPISPYLFVLTMEYLSRNCALIVNDPLFKF 3261
RKGL QG+P+SP+LF L MEYLSR + P F F
Sbjct: 636 QARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNF 674
Score = 95.1 bits (235), Expect(4) = 7e-53
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+ S E+ EA I KAP LDG + FKK W ++ + I E F ++ IN I
Sbjct: 438 VASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCI 497
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
+V+L+PKV++ R+K++RPI+CC V+ K + T + VV + + R +
Sbjct: 498 VVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIA 557
Query: 2915 HNILLCLELLKGYSQTH 2965
NILL EL++GY++ H
Sbjct: 558 DNILLASELIRGYTRKH 574
Score = 57.0 bits (136), Expect(4) = 7e-53
Identities = 40/159 (25%), Positives = 62/159 (38%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H KC T++ FADDL++F D S+ + + F ++ + G
Sbjct: 675 HPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVD 734
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
K LT A C PL+ I +R Q W+A+ LSY G
Sbjct: 735 DETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAG 794
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
R+ + +W+ IFPL ++ + +CR LW
Sbjct: 795 RLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLW 833
Score = 25.4 bits (54), Expect(4) = 7e-53
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 2293 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRDENRDNINVSPSIVNHMLAFYQGMLG 2472
S WL + N F + R + I +L E+ I + + +L FY+ +LG
Sbjct: 348 SRITWLQQGDTNSKLFFTAVKA-RHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLG 406
Query: 2473 TSAFT 2487
T A T
Sbjct: 407 TRAST 411
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +2
Query: 1280 AWNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANGGMD 1459
+WN+R +NDP K + + + +K+ + +LETR R N + K KDW N
Sbjct: 5 SWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSHS 64
Query: 1460 RSFRIIVLWKSIEVQVSILMKTNRLIYCEV 1549
RI + W+ V V++ +L+ C++
Sbjct: 65 ARERIWIGWRPAWVNVTLTHTQEQLMVCDI 94
Score = 41.6 bits (96), Expect(2) = 2e-09
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Frame = +3
Query: 1593 YAANDVDGQRA*WTINIDLAQSISEPRLIFGDFNVVLNSVEKVVKSGAMCNVGSKLHHVF 1772
Y + + +++ W+ + Q +P +I GDFN V +S +++ +
Sbjct: 107 YGLHTIADRKSLWSGLLQCVQQ-QDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFL 165
Query: 1773 ETCQPQELRFLGNKLT*SNS-----HTYCKLDRALFNDSWFLTFHHFLAEFGVPGVSNHS 1937
E R + + SNS ++D+A N W + ++ PG+S+HS
Sbjct: 166 LQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHS 225
Query: 1938 PIMVRLLEKLFLQKVPFKFKN 2000
P++ L+ PFKF N
Sbjct: 226 PLLFNLMTGRPQGGKPFKFMN 246
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 94.0 bits (232), Expect(4) = 1e-52
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K +DS +W+F+ V+ A FP F+ W++LC+ + +SI +NG L GYF
Sbjct: 315 CAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSA 374
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+GL QG +SPYLFV++M+ LSR
Sbjct: 375 RGLRQGCSLSPYLFVISMDVLSR 397
Score = 83.6 bits (205), Expect(4) = 1e-52
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = +2
Query: 2522 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVF 2701
CS R + +T E+K+ F + K+P DG T+ +K W + V AI F
Sbjct: 162 CSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFF 221
Query: 2702 RIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGV 2878
G L +N+ I++LIPK + IKDYRPISCCNV+ K + + P +
Sbjct: 222 AKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVG 281
Query: 2879 TEGMLV*NRSMVHNILLCLELLKGY 2953
+ V +R ++ N+LL EL+K Y
Sbjct: 282 NQSAFVKDRLLIENVLLATELVKDY 306
Score = 53.1 bits (126), Expect(4) = 1e-52
Identities = 42/159 (26%), Positives = 60/159 (37%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H +C+ T++ FADDLM+ G + S+ + K F L + G
Sbjct: 411 HPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVS 470
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
L K LT +D PLI QI RI W +R+LS+ G
Sbjct: 471 DHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAG 530
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
R+ FW F LP +++I + LLW
Sbjct: 531 RLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLW 569
Score = 48.1 bits (113), Expect(4) = 1e-52
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 3755 KKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLKH 3934
KK+ VS D +C+ + GLG + + NK +S K ++ S D +W +W R LK
Sbjct: 577 KKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLS--CQDSLWVKWTRMNLLKK 634
Query: 3935 VGIWEIPVRLS-DSWWWSQLL 3994
W I + SW W +LL
Sbjct: 635 ESFWSIGTHSTLGSWIWRRLL 655
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 89.7 bits (221), Expect(4) = 2e-50
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K +DS +W F+ V GFP F+ W+ +C+ + +S+ +NG L GYF
Sbjct: 594 CAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSS 653
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+GL QG +SPYLFV+ M+ LS+
Sbjct: 654 RGLRQGCALSPYLFVICMDVLSK 676
Score = 83.2 bits (204), Expect(4) = 2e-50
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+T+ E+++ F + + K+P DG T+ FK W + T A+ F G L IN+
Sbjct: 453 VTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINST 512
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK +KDYRPISCCNV+ K + + P + + V +R ++
Sbjct: 513 ILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLI 572
Query: 2915 HNILLCLELLKGY 2953
N+LL EL+K Y
Sbjct: 573 ENLLLATELVKDY 585
Score = 53.5 bits (127), Expect(4) = 2e-50
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKF------WLIFLLCLA*SSMR*IVLC 3422
H KC+ T++SFADDLM+ G + SI + K W + L S++
Sbjct: 690 HPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTV------ 743
Query: 3423 F*VGFIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIAR 3602
+ G K L+ DC PL+ Q+ RI W +R
Sbjct: 744 YLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSR 803
Query: 3603 HLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
LSY GR+ FW F LP + ++ +C LW
Sbjct: 804 FLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLW 848
Score = 45.1 bits (105), Expect(4) = 2e-50
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 3752 SKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLK 3931
S K+ +S VC+ + GLG + + N K V+ S + + +W +W+ ++ L+
Sbjct: 855 SNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHS--NSLWVKWVDQHLLR 912
Query: 3932 HVGIWEIPVRLSD-SWWWSQLL 3994
+ WE+ +S SW W +LL
Sbjct: 913 NASFWEVKQTVSQGSWIWKKLL 934
Score = 58.5 bits (140), Expect(2) = 2e-12
Identities = 36/102 (35%), Positives = 51/102 (50%)
Frame = +2
Query: 1283 WNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANGGMDR 1462
WN+R LN K V+ K N ++ETR + + LV K KDW + N +R
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65
Query: 1463 SFRIIVLWKSIEVQVSILMKTNRLIYCEVFTAD*LYHFFCDF 1588
RI VLW+ V++S + K+ +L+ C V D FFC F
Sbjct: 66 RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSF 106
Score = 43.9 bits (102), Expect(2) = 2e-12
Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTINIDLAQSI---SEPRLIFGDFNVVLNSVEKVVKS-GAMC 1742
FF +F YA+N V+ ++ W+ D S +P + GDFN L+ E M
Sbjct: 102 FFCSFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMV 161
Query: 1743 NVGSK-LHHVFETCQPQELRFLGNKLT*SNSHTYC----KLDRALFNDSWFLTFHHFLAE 1907
G + V C ++ G T N + KLDR L ND W TF +
Sbjct: 162 TPGMRDFQQVINYCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSV 221
Query: 1908 FGVPGVSNHSPIMVRLLEKLFLQKV----PFKFKN 2000
F G S+H + L + KV PFKF N
Sbjct: 222 FEAGGCSDHLRCRISLNSEAG-NKVQGLKPFKFVN 255
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 87.8 bits (216), Expect(4) = 9e-49
Identities = 38/85 (44%), Positives = 53/85 (62%)
Frame = +1
Query: 2965 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 3144
SP C KIDI K +DS +W F+ + A FP F W+ LC+ + +S+ +NG L G+F
Sbjct: 164 SPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFF 223
Query: 3145 PGRKGLCQGNPISPYLFVLTMEYLS 3219
++GL QG +SPYLFV+ M LS
Sbjct: 224 GSKRGLRQGCALSPYLFVICMNVLS 248
Score = 79.0 bits (193), Expect(4) = 9e-49
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+TS E ++ F + ++K P DG T+ FK WS AI F G L +NA
Sbjct: 26 VTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNAT 85
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK + ++DYRPISCCNV+ K + + P+ + + V R ++
Sbjct: 86 ILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLI 145
Query: 2915 HNILLCLELLKGY 2953
N+LL EL+K Y
Sbjct: 146 ENVLLATELVKDY 158
Score = 51.6 bits (122), Expect(4) = 9e-49
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 6/165 (3%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFL------LCLA*SSMR*IVLC 3422
H KC+ T++ FADDLM+F G S+ V + F + L S++
Sbjct: 263 HPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTL------ 316
Query: 3423 F*VGFIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIAR 3602
+ G ++ K +T AD PL+ ++ S+I W AR
Sbjct: 317 YLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTAR 376
Query: 3603 HLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
LSY GR+ FW + LP + +I LC LW
Sbjct: 377 SLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLW 421
Score = 47.4 bits (111), Expect(4) = 9e-49
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 3755 KKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLKH 3934
KK+ ++ ++C+L + GLG K +L NK + K ++ S +W W+ Y ++
Sbjct: 429 KKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS--RQSSLWVNWVWTYIIRK 486
Query: 3935 VGIWEIPVRLS-DSWWWSQLLHILD 4006
W R S SW W +LL D
Sbjct: 487 GSFWSANDRSSLGSWMWKKLLKYRD 511
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 89.0 bits (219), Expect(4) = 2e-48
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K +DS +W+F+ ++A F F+ W+ LC+ + +S+ +NG L GYF +
Sbjct: 241 CAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSK 300
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+GL QG +SPYLFV+ M+ LS+
Sbjct: 301 RGLRQGCSLSPYLFVICMDVLSK 323
Score = 80.1 bits (196), Expect(4) = 2e-48
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
++S E+K F + K+P DG T+ +K W + T + F+ G L IN+I
Sbjct: 100 VSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSI 159
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK ++DYRPISCCNV+ K + + P + + V +R ++
Sbjct: 160 ILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLI 219
Query: 2915 HNILLCLELLKGY 2953
N+LL EL+K Y
Sbjct: 220 ENLLLATELVKDY 232
Score = 48.1 bits (113), Expect(4) = 2e-48
Identities = 44/165 (26%), Positives = 61/165 (36%), Gaps = 6/165 (3%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFL------LCLA*SSMR*IVLC 3422
H KC+ T++SFADDLM+ G SI + + + F + L S++
Sbjct: 337 HPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTL------ 390
Query: 3423 F*VGFIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIAR 3602
+ G ++ K LT AD PL+ QI RI W R
Sbjct: 391 YMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFR 450
Query: 3603 HLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
S+ GR FW F LP + +I LC LW
Sbjct: 451 FFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLW 495
Score = 47.8 bits (112), Expect(4) = 2e-48
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +2
Query: 3737 GGWKRSKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIR 3916
G S K+ +S D VC+ GLG + + N + K V+ S + + +W +W+
Sbjct: 497 GSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNS--NSLWTKWVA 554
Query: 3917 EYRLKHVGIWEIPVRLS-DSWWWSQLLHILD 4006
EY ++ IW + S SW W ++L I D
Sbjct: 555 EYLIRKKSIWSLKQSTSMGSWIWRKILKIRD 585
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 86.3 bits (212), Expect(4) = 8e-46
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K DS +W+F+ + A FP F+ W+ LC+ + +S+ +NG L G+F
Sbjct: 147 CAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSS 206
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+GL QG +SPYLFV+ M+ LS+
Sbjct: 207 RGLRQGCALSPYLFVICMDVLSK 229
Score = 80.5 bits (197), Expect(4) = 8e-46
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+++ E+K+ F + K+P DG T+ FK+ W + AI F +G L +N+
Sbjct: 6 VSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNST 65
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK +KDYRPISCCNV+ K + + P + + V +R ++
Sbjct: 66 ILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLI 125
Query: 2915 HNILLCLELLKGY 2953
N+LL +L+K Y
Sbjct: 126 ENVLLATDLVKDY 138
Score = 49.3 bits (116), Expect(4) = 8e-46
Identities = 43/164 (26%), Positives = 57/164 (34%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H C+ T++SFADDLM+ G SI + + + +F F G
Sbjct: 243 HPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLS 302
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
K L+ D PLI QI RI W +R LS+ G
Sbjct: 303 STSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAG 362
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLWVAGNV 3752
R FW F LP + +I LC LW N+
Sbjct: 363 RFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNL 406
Score = 39.7 bits (91), Expect(4) = 8e-46
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 3752 SKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLK 3931
SKK+ +S + VC+ GLG + + N K V+ S D +W +W+ LK
Sbjct: 408 SKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHG--DSLWVKWVEHNLLK 465
Query: 3932 HVGIWEIPVRLS-DSWWWSQLL 3994
W + + SW W ++L
Sbjct: 466 REIFWIVKENANLGSWIWKKIL 487
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 94.7 bits (234), Expect(4) = 5e-43
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +1
Query: 2956 ANSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLE 3135
A+ P CTF +D+ K D+ EW+F+ + AF P+ + W+ C+ S K+S+ +NG L
Sbjct: 409 ADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELA 468
Query: 3136 GYFPGRKGLCQGNPISPYLFVLTMEYLSRNCALIVN-DPLFKF 3261
G+F R+GL QG+P+SPYLFV+ ME LS +N P F++
Sbjct: 469 GFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRY 511
Score = 79.3 bits (194), Expect(4) = 5e-43
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 2561 TSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVR-GLVTEAILEVFRIGKLVN*INAI 2737
T +++ FF ++ +K+P DG F+K W + +V A+ E F G L+ +N+
Sbjct: 274 THDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNST 333
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++L+PKV NP + D+RPISCCN K + + + +VG ++ + R +
Sbjct: 334 IITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIG 393
Query: 2915 HNILLCLELLKGY 2953
NILL E++ Y
Sbjct: 394 DNILLAQEIICDY 406
Score = 45.1 bits (105), Expect(4) = 5e-43
Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Frame = +2
Query: 3368 ANFSTVSSLIINEMNSAMFLGGVYPGTMDAILKELKFQEGTXXXXXXXXXXXXKNV---D 3538
+NF ++SSL N S +FL GV + D++L+ F GT + D
Sbjct: 548 SNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQD 607
Query: 3539 CC*L*PFD*TDFE*NSTLDSPTP*LFG*SIVDLLYFAQY*EILESDFSTSIYNLA*NLDL 3718
C L D + S + +L FA ++++S S+ A +L L
Sbjct: 608 CSPL--LDRIETRIKSWENK------------VLSFAGRLQLIQSVLSSIQVYWASHLIL 653
Query: 3719 V*IIIVGGWKRSKKSL------------VS*DNVCQLVENQGLGFKEVLS*NKATSCKFV 3862
++ KR + L V+ +C GLG K++ NKA +
Sbjct: 654 PKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHI 713
Query: 3863 FSCASGAAMDPIWCQWIREYRLKHVGIWEIPVRLSDSWWWSQLLHI 4000
++ S ++ W W++ Y LK W P+ SW W +LL I
Sbjct: 714 WNLVSSSSN--FWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKI 757
Score = 26.9 bits (58), Expect(4) = 5e-43
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 3347
H +C +++ FADDL++F GD S+
Sbjct: 512 HWRCDQLNLSHLCFADDLLMFCNGDENSV 540
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 85.5 bits (210), Expect(3) = 2e-42
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K +DS +W F+ V+ A FP F W+TLC+ + +S+ +NG L G F
Sbjct: 482 CALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSA 541
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+ L QG +SPYLFV++M+ LS+
Sbjct: 542 RELRQGCSLSPYLFVISMDVLSK 564
Score = 76.6 bits (187), Expect(3) = 2e-42
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+++ E+ + F + K+P DG T +K W+ + AI F G L IN+
Sbjct: 341 VSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINST 400
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK + +KDYRPISCCNV+ K + + P + + V +R ++
Sbjct: 401 ILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLI 460
Query: 2915 HNILLCLELLKGY 2953
N+LL E++K Y
Sbjct: 461 ENVLLATEIVKDY 473
Score = 62.0 bits (149), Expect(3) = 2e-42
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKF------WLIFLLCLA*SSMR*IVLC 3422
H KCR T++SFADDLM+ G + SI + K W + + S+M
Sbjct: 578 HPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTM------ 631
Query: 3423 F*VGFIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIAR 3602
+ G ++ K LT +DC PLI Q+ +I+ W +R
Sbjct: 632 YLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSR 691
Query: 3603 HLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
LS+ GR+ FW F LP + +I LC LW
Sbjct: 692 FLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLW 736
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 76.6 bits (187), Expect(4) = 3e-42
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 2983 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 3162
KIDI K +D +W F+ V+ A P F+ W+ LC+ + +S+ +NG L G+F +GL
Sbjct: 744 KIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGL 803
Query: 3163 CQGNPISPYLFVLTMEYLS 3219
QG +SPYL+V+ M LS
Sbjct: 804 RQGCSLSPYLYVICMNVLS 822
Score = 70.5 bits (171), Expect(4) = 3e-42
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 2597 DASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAIIVSLIPKVENPDR 2776
+A K+P DG T FK W + + AI F G L IN I++LI K
Sbjct: 613 EAHKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSG 672
Query: 2777 IKDYRPISCCNVVQKF-QRFCTGNVTYSKPSVVGVTEGMLV*NRSMVHNILLCLELLKGY 2953
+KDYRPISCCNV+ K + + P+ + + + +R M+ N+LL EL+K Y
Sbjct: 673 MKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDY 732
Score = 48.1 bits (113), Expect(4) = 3e-42
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 18/177 (10%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSI----CCVKKF----WL--------IFLLCLA 3392
H +CR T++ FADD+M+F G SI +KF WL IF+ ++
Sbjct: 837 HPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGIS 896
Query: 3393 *SSMR*IV--LCF*VGFIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIR 3566
++ I+ F +G + V ++ K +T +D PL+
Sbjct: 897 PNAKTSILQQFPFELGTLPVKYL------------------GLPLLTKRMTQSDYLPLVE 938
Query: 3567 QILSRIQHWIARHLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
+I +RI W R LS+ GR+ FW +F LP L +I + LW
Sbjct: 939 KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLW 995
Score = 48.1 bits (113), Expect(4) = 3e-42
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 3752 SKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLK 3931
+KK+ ++ VC+L E GLG K + N+ + K ++ S A D +W +W+ ++ ++
Sbjct: 1002 TKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILS--ARDSLWVKWVNKHLIR 1059
Query: 3932 HVGIWEIPVRLS-DSWWWSQLLHILDK 4009
W + SW W ++L DK
Sbjct: 1060 KETFWSVKENTGLGSWLWRKILKQRDK 1086
Score = 53.5 bits (127), Expect(2) = 2e-10
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTI---NIDLAQSISEPRLIFGDFNVVLNSVE--KVVKSGAM 1739
FFV+F YA+N VD +R W + DL ++ +I GDFN +L+ + V S +
Sbjct: 339 FFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFI 398
Query: 1740 CNVGSKLHHVFETCQPQELRFLGNKLT*SNSH----TYCKLDRALFNDSWFLTFHHFLAE 1907
V C ++ + G T N KLDR L N+ W F +
Sbjct: 399 PQGMRDFQDVVRYCSLADMSYHGPVFTWCNKREEGLVNKKLDRVLVNEVWTRKFPAVYSI 458
Query: 1908 FGVPGVSNHSPIMVRLLEKLFLQKVPFKFKN 2000
F G+S+H ++ K PFKF N
Sbjct: 459 FEAGGISDHLRCRIKFASGNTQPKGPFKFNN 489
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +2
Query: 1331 KCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANGGMDRSFRIIVLWKSIEVQVS 1510
K S + L+ ++ETR N ++ K +DW N R RI V+WK+ V+V+
Sbjct: 259 KSSHKDSLTFGGLIETRVDENRASRIISKVFRDWSSMTNYEHHRLGRIWVVWKN-TVRVT 317
Query: 1511 ILMKTNRLIYCEVFTAD*LYHFFCDF 1588
+ K+ +LI C V T + FF F
Sbjct: 318 PVYKSGQLITCSVLTEENAEDFFVSF 343
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
[Arabidopsis thaliana]
Length = 657
Score = 81.3 bits (199), Expect(4) = 5e-40
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = +1
Query: 2983 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 3162
++D+ K YD+ W F+ ++ A P F+ W+ +C+ + YSI NG L G+F G+KG+
Sbjct: 138 QVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGI 197
Query: 3163 CQGNPISPYLFVLTMEYLSRNCAL 3234
QG+P+S +LFVL M+ L+R+ L
Sbjct: 198 RQGDPMSSHLFVLVMDILARSLDL 221
Score = 63.2 bits (152), Expect(4) = 5e-40
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +2
Query: 2582 AFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAIIVSLIPKV 2761
A F + +KAP DG F + W V+ AI E F G L+ NA ++LIPKV
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKV 61
Query: 2762 ENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMVHNILLCLE 2938
D++ +RP++CC + K R + + V + + R + N+LL E
Sbjct: 62 PGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASE 121
Query: 2939 LLKGY 2953
L+ +
Sbjct: 122 LVDNF 126
Score = 57.4 bits (137), Expect(4) = 5e-40
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = +3
Query: 3258 VHLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*S-SMR*IVLCF*VG 3434
+H KC T++SFADD+++F G L S+ + +F +++ L G
Sbjct: 230 LHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGG 289
Query: 3435 FIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSY 3614
+ ++ KM D PL+ +I SR W ARHLS+
Sbjct: 290 NFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKK-HDYQPLVDRINSRFTSWTARHLSF 348
Query: 3615 LGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
GR+ FW+ IF LP LHK+ +C LW
Sbjct: 349 AGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLW 389
Score = 34.3 bits (77), Expect(4) = 5e-40
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 3737 GGWKRSKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIR 3916
G ++++ +S D VC E+ GLG K + S NK + K ++ + A +W W+R
Sbjct: 391 GAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLLFT--ASGSLWVSWVR 448
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 96.7 bits (239), Expect(3) = 6e-40
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = +1
Query: 2965 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 3144
SP C KID+ K Y+S EW F++ +ML GF FV WV C+ + Y+ NING L F
Sbjct: 259 SPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPF 318
Query: 3145 PGRKGLCQGNPISPYLFVLTMEYLSRNCALIVNDPLFKF 3261
+KGL QG+PISPYLFV+ MEYL+ + + F+F
Sbjct: 319 AAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRF 357
Score = 92.0 bits (227), Expect(3) = 6e-40
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Frame = +2
Query: 2552 CS-LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*I 2728
CS T++EVK F +D+SKAP +DG FK W+ + V +AIL+ F+ G + I
Sbjct: 118 CSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKII 177
Query: 2729 NAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NR 2905
N ++L+PK N +K++RPI+CC+V+ K + T + SVV + V R
Sbjct: 178 NCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGR 237
Query: 2906 SMVHNILLCLELLKGYSQ 2959
+ NI+L EL+K YS+
Sbjct: 238 VIFDNIILSHELVKSYSR 255
Score = 26.9 bits (58), Expect(3) = 6e-40
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 2293 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRDENRDNINVSPSIVNHMLAFYQGMLG 2472
S + W+ N FFHA R+ ++I L E+ I+ I + FY ++G
Sbjct: 31 SRANWIQLGDSNTKFFHAYAKE-RRCQNNIKFLITEDGTRIDKHNLIKEEIRGFYLKLMG 89
Query: 2473 TS 2478
+S
Sbjct: 90 SS 91
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 87.0 bits (214), Expect(4) = 2e-39
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 2959 NSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEG 3138
N P K+D+ K +DS W+F+ + A G P+ FV W+T C+ + +S+ +NG+ G
Sbjct: 536 NIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGG 595
Query: 3139 YFPGRKGLCQGNPISPYLFVLTMEYLS 3219
+F +GL QGNP+SP+LFVL ME S
Sbjct: 596 FFKSTRGLRQGNPLSPFLFVLAMEVFS 622
Score = 78.6 bits (192), Expect(4) = 2e-39
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Frame = +2
Query: 2522 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVF 2701
CS+ + + S + ++K AFF ++K DG FK+ WS + VT+A+ E F
Sbjct: 384 CSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFF 443
Query: 2702 RIGKLVN*INAIIVSLIPKVENPDRIKDYRPISC-----CNVVQKFQRFCTGNVTYSKPS 2866
L+ NA + LIPK+ N ++ D+RPISC + + R T +
Sbjct: 444 TSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQ 503
Query: 2867 VVGVTEGMLV*NRSMVHNILLCLELLKGYSQ 2959
V+ + + R + N+LL EL++GY++
Sbjct: 504 VISPFQSAFLPGRFLAENVLLATELVQGYNR 534
Score = 37.0 bits (84), Expect(4) = 2e-39
Identities = 36/164 (21%), Positives = 60/164 (36%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H K +++ FADD+M+F G S+ + + F R + G
Sbjct: 637 HPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLD 696
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
++ + L +A+ PL+ ++ R + W + LS+ G
Sbjct: 697 RI---------------------EASTIARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAG 735
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLWVAGNV 3752
RV FW F LP + +I LC LW +GN+
Sbjct: 736 RVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLW-SGNI 778
Score = 31.2 bits (69), Expect(4) = 2e-39
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 2293 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRDENRDNINVSPSIVNHMLAFYQGMLG 2472
S W+ E N ++FH + R+ ++I ++ D+N I+ I H + ++ +LG
Sbjct: 305 SRVTWMGEGDSNTSYFHRMADS-RKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLG 363
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 87.8 bits (216), Expect(3) = 1e-37
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Frame = +2
Query: 2558 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAI 2737
+T EV + FF I +K+P DG T F++ WS + VT AI F G L +N+
Sbjct: 719 ITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNST 778
Query: 2738 IVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMV 2914
I++LIPK +KDYRPISCCNV+ K + + P + + + +R ++
Sbjct: 779 ILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLM 838
Query: 2915 HNILLCLELLKGY 2953
N+LL EL+K Y
Sbjct: 839 ENLLLASELVKDY 851
Score = 68.2 bits (165), Expect(3) = 1e-37
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +1
Query: 2965 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 3144
SP C KID+ K +DS +W F+ + A P F+ W+ LC+ + +S+ +N
Sbjct: 857 SPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN------- 909
Query: 3145 PGRKGLCQGNPISPYLFVLTMEYLS 3219
GL QG +SPYLFV+ M LS
Sbjct: 910 ----GLRQGCSLSPYLFVICMNVLS 930
Score = 52.0 bits (123), Expect(3) = 1e-37
Identities = 41/159 (25%), Positives = 58/159 (36%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H +CR T++ FADD+M+F G S+ V + F + F
Sbjct: 945 HPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASIS 1004
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
K +T+ADC PL+ +I SRI W R LSY G
Sbjct: 1005 SETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAG 1064
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
R+ +FW F LP + +I + LW
Sbjct: 1065 RLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLW 1103
Score = 46.6 bits (109), Expect(2) = 9e-08
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTINIDLAQSIS---EPRLIFGDFNVVLNSVEKVVKS-GAMC 1742
F +F YA+N V+ ++ W +L S++ +P L+FGDFN L E + M
Sbjct: 404 FICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMV 463
Query: 1743 NVGSK-LHHVFETCQPQELRFLGNKLT*SNSHT---YCK-LDRALFNDSWFLTFHHFLAE 1907
G + V C +++R G T N CK LDR L N + + H
Sbjct: 464 TPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCI 523
Query: 1908 FGVPGVSNHSPIMVRLLEKLFLQKVPFKFKN 2000
G S+H L + K PFKF N
Sbjct: 524 MDSGGCSDHLRGRFHLRSAIQKPKGPFKFTN 554
Score = 40.0 bits (92), Expect(2) = 9e-08
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +2
Query: 1367 VLETRRRVNNWESLVKKFKKDWLLDANGGMDRSFRIIVLWKSIEVQVSILMKTNRLIYCE 1546
VLETR + + K KDW + +N +R RI V+W S VQ+ ++ K++++I C
Sbjct: 336 VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSS-SVQLQVIFKSSQMIVCL 394
Query: 1547 VFTAD*LYHFFCDF 1588
V F C F
Sbjct: 395 VRVEHYDVEFICSF 408
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 92.0 bits (227), Expect(2) = 6e-36
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Frame = +2
Query: 2438 TIC*HFTRECW---AHLLLPSSLTQQD*YG--SCSYYSTRGSSCSLTSMEVKEAFFDIDA 2602
T C F +E + +HL+ ++Q + C + + ++ ++K FF + +
Sbjct: 401 THCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPS 460
Query: 2603 SKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIK 2782
+K+P DG T+ FKK WS V + A+ E FR G+L+ N+ V+++PK N DRI
Sbjct: 461 NKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRIT 520
Query: 2783 DYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMVHNILLCLELLKGYSQ 2959
++RPISCCN + K + + P + ++ V R + N+LL EL++G+ Q
Sbjct: 521 EFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQ 580
Query: 2960 TH 2965
+
Sbjct: 581 AN 582
Score = 89.7 bits (221), Expect(2) = 6e-36
Identities = 43/89 (48%), Positives = 56/89 (62%)
Frame = +1
Query: 2956 ANSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLE 3135
AN S K+D+ K +DS W F+ + A P FV W+ C+ S +SIN++GSL
Sbjct: 581 ANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC 640
Query: 3136 GYFPGRKGLCQGNPISPYLFVLTMEYLSR 3222
GYF G KGL QG+P+SP LFV+ ME LSR
Sbjct: 641 GYFKGSKGLRQGDPLSPSLFVIAMEILSR 669
Score = 55.5 bits (132), Expect(2) = 2e-09
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTINIDLA--QSISE-PRLIFGDFNVVLNSVEKVVKSGAMCN 1745
F VTF YA N G+R W+ LA Q+ S+ P +I GDFN L+ V+ +
Sbjct: 103 FVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITR 162
Query: 1746 VGSKLHHVFETCQPQELRFLGNKLT*----SNSHTYCKLDRALFNDSWFLTFHHFLAEFG 1913
+ T +L F GN T N+ K+DR L NDSW + F
Sbjct: 163 GMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFC 222
Query: 1914 VPGVSNHSPIMVRLLEKLFLQKVPFKFKNF 2003
S+H P V + + + PFK NF
Sbjct: 223 AMEFSDHCPSCVNISNQSGGRNKPFKLSNF 252
Score = 36.6 bits (83), Expect(2) = 2e-09
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = +2
Query: 1268 INIGAWNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDAN 1447
I+ +WN+R N+ +++R K ++K +LETR + + + W N
Sbjct: 2 IDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCN 61
Query: 1448 GGMDRSFRIIVLWKSIEVQVSILMKTNRLIYCEV 1549
RI V+W V+V++L K+++ I C V
Sbjct: 62 YEFAALGRIWVVWDP-AVEVTVLSKSDQTISCTV 94
Score = 42.0 bits (97), Expect(2) = 7e-07
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = +3
Query: 3528 KMLTVADCDPLIRQILSRIQHWIARHLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHK 3707
+ L +D LI +I +R HW + LS+ GR+ FW F LP L
Sbjct: 771 RKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKT 830
Query: 3708 I*TLCR*LLWVAGNVVRR 3761
I +C LW GN + R
Sbjct: 831 IEQMCNRFLW--GNDITR 846
Score = 41.6 bits (96), Expect(2) = 7e-07
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +2
Query: 3767 VS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLKHVGIW 3946
VS N C GLG + + NK + + ++ A D +W W RL+HV W
Sbjct: 852 VSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLF--ARRDSLWVAWNHANRLRHVNFW 909
Query: 3947 EIPVRLSDSWWWSQLL 3994
SW W +L
Sbjct: 910 NAEAASHHSWIWKAIL 925
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 81.3 bits (199), Expect(3) = 8e-36
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = +1
Query: 2983 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 3162
++D+ K YD+ W F+ ++ A P F+ W+ +C+ + YSI NG L G+F G+KG+
Sbjct: 138 QVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGI 197
Query: 3163 CQGNPISPYLFVLTMEYLSRNCAL 3234
QG+P+S +LFVL M+ L+R+ L
Sbjct: 198 RQGDPMSSHLFVLVMDILARSLDL 221
Score = 63.2 bits (152), Expect(3) = 8e-36
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +2
Query: 2582 AFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVFRIGKLVN*INAIIVSLIPKV 2761
A F + +KAP DG F + W V+ AI E F G L+ NA ++LIPKV
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKV 61
Query: 2762 ENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGMLV*NRSMVHNILLCLE 2938
D++ +RP++CC + K R + + V + + R + N+LL E
Sbjct: 62 PGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASE 121
Query: 2939 LLKGY 2953
L+ +
Sbjct: 122 LVDNF 126
Score = 57.4 bits (137), Expect(3) = 8e-36
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = +3
Query: 3258 VHLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*S-SMR*IVLCF*VG 3434
+H KC T++SFADD+++F G L S+ + +F +++ L G
Sbjct: 230 LHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGG 289
Query: 3435 FIQVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSY 3614
+ ++ KM D PL+ +I SR W ARHLS+
Sbjct: 290 NFERNRIMAASLGVSQGSLPVRYLGVPLMSQKM-KKHDYQPLVDRINSRFTSWTARHLSF 348
Query: 3615 LGRVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW 3737
GR+ FW+ IF LP LHK+ +C LW
Sbjct: 349 AGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLW 389
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 662
Score = 89.0 bits (219), Expect(3) = 6e-35
Identities = 38/83 (45%), Positives = 54/83 (65%)
Frame = +1
Query: 2974 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 3153
C KIDI K +DS +W+F+ V+L FP FV W+ LCV + +S+ +N L GYF
Sbjct: 112 CAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSL 171
Query: 3154 KGLCQGNPISPYLFVLTMEYLSR 3222
+GL QG ++PYLFV+ M+ LS+
Sbjct: 172 RGLRQGCSLTPYLFVIVMDVLSK 194
Score = 58.9 bits (141), Expect(3) = 6e-35
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +2
Query: 2714 LVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGM 2890
+ N +N+ I++LIPK IKDYRPISCCNV+ K + + P + +
Sbjct: 23 IYNGVNSTILALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSA 82
Query: 2891 LV*NRSMVHNILLCLELLKGY 2953
+ +R ++ N+LL EL+K Y
Sbjct: 83 FIKDRLLIENLLLATELVKDY 103
Score = 50.8 bits (120), Expect(3) = 6e-35
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 4/179 (2%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 3440
H KC+ T++SFADD+M+ G L S+ + + + F + G
Sbjct: 208 HPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGIS 267
Query: 3441 QVLWMLXXXXXXXXXXXXXXXXXXXXXXXKMLTVADCDPLIRQILSRIQHWIARHLSYLG 3620
+ + K T D PL+ QI RI W AR LSY G
Sbjct: 268 KSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAG 327
Query: 3621 RVXXXXXXXXXXKRFWSQIFPLPFIILHKI*TLCR*LLW----VAGNVVRRVWSHRTMC 3785
R+ FW F LP + +I LC LW ++ N + W T+C
Sbjct: 328 RLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAW--ETVC 384
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 86.7 bits (213), Expect(4) = 1e-33
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +2
Query: 2522 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVF 2701
CS S + ++++EAFF + +KA DG ++ FK W V VTEA+ E F
Sbjct: 436 CSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495
Query: 2702 RIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGV 2878
R G+L+ NA + LIPK+ N ++ D+RPISC N + K + T + V+
Sbjct: 496 RSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISP 555
Query: 2879 TEGMLV*NRSMVHNILLCLELLKGYS 2956
++ + R + N+LL E++ GY+
Sbjct: 556 SQSAFLPGRLLSENVLLATEIVHGYN 581
Score = 82.0 bits (201), Expect(4) = 1e-33
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +1
Query: 2983 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 3162
K+D+ K +DS W+F+ A P FV W+ C+ + +S+ +NGS G+F KGL
Sbjct: 592 KVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGL 651
Query: 3163 CQGNPISPYLFVLTMEYLS 3219
QG+P+SPYLFVL ME S
Sbjct: 652 RQGDPLSPYLFVLAMEVFS 670
Score = 24.6 bits (52), Expect(4) = 1e-33
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 2293 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRD---ENRDNINVSPSIVNHMLAFYQG 2463
S WL E N +FH + + I++ FL+ D + I H F++
Sbjct: 353 SSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFES 412
Query: 2464 ML 2469
+L
Sbjct: 413 LL 414
Score = 21.2 bits (43), Expect(4) = 1e-33
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 3347
H K +++ FADD+M+F G S+
Sbjct: 685 HPKTADLSISHLMFADDVMVFFDGGSSSL 713
Score = 60.5 bits (145), Expect(2) = 2e-09
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTINIDLAQS---ISEPRLIFGDFNVVLNSVEKVVKSGAMCN 1745
F V+ YA+N+ ++ W + LA S + ++ GDFN +LN +S N
Sbjct: 104 FVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-----ESAINAN 158
Query: 1746 VGSKLHHVFETC----QPQELRFLGNKLT*SNSHTYC----KLDRALFNDSWFLTFHHFL 1901
+G K+ F +C +L + G+ T N + K+DR L ND W F
Sbjct: 159 IGRKIR-AFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAY 217
Query: 1902 AEFGVPGVSNHSPIMVRLLEKLFLQKVPFKFKNFWRSN 2015
A FG P S+HS V L + K PF+F N++ N
Sbjct: 218 ANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHN 255
Score = 32.0 bits (71), Expect(2) = 2e-09
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = +2
Query: 1283 WNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANGGMDR 1462
WN+R N +R K +NK ++ET + + + W N
Sbjct: 8 WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67
Query: 1463 SFRIIVLWKSIEVQVSILMKTNRLIYCEVFTAD 1561
+I VLW V+V ++ ++ ++I CE+ D
Sbjct: 68 LGKIWVLWDP-SVKVVVIGRSLQMITCELLLPD 99
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 86.7 bits (213), Expect(4) = 1e-33
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +2
Query: 2522 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVF 2701
CS S + ++++EAFF + +KA DG ++ FK W V VTEA+ E F
Sbjct: 436 CSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495
Query: 2702 RIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGV 2878
R G+L+ NA + LIPK+ N ++ D+RPISC N + K + T + V+
Sbjct: 496 RSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISP 555
Query: 2879 TEGMLV*NRSMVHNILLCLELLKGYS 2956
++ + R + N+LL E++ GY+
Sbjct: 556 SQSAFLPGRLLSENVLLATEIVHGYN 581
Score = 82.0 bits (201), Expect(4) = 1e-33
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +1
Query: 2983 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 3162
K+D+ K +DS W+F+ A P FV W+ C+ + +S+ +NGS G+F KGL
Sbjct: 592 KVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGL 651
Query: 3163 CQGNPISPYLFVLTMEYLS 3219
QG+P+SPYLFVL ME S
Sbjct: 652 RQGDPLSPYLFVLAMEVFS 670
Score = 24.6 bits (52), Expect(4) = 1e-33
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 2293 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRD---ENRDNINVSPSIVNHMLAFYQG 2463
S WL E N +FH + + I++ FL+ D + I H F++
Sbjct: 353 SSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFES 412
Query: 2464 ML 2469
+L
Sbjct: 413 LL 414
Score = 21.2 bits (43), Expect(4) = 1e-33
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 3347
H K +++ FADD+M+F G S+
Sbjct: 685 HPKTADLSISHLMFADDVMVFFDGGSSSL 713
Score = 60.5 bits (145), Expect(2) = 2e-09
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Frame = +3
Query: 1575 FFVTFNYAANDVDGQRA*WTINIDLAQS---ISEPRLIFGDFNVVLNSVEKVVKSGAMCN 1745
F V+ YA+N+ ++ W + LA S + ++ GDFN +LN +S N
Sbjct: 104 FVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-----ESAINAN 158
Query: 1746 VGSKLHHVFETC----QPQELRFLGNKLT*SNSHTYC----KLDRALFNDSWFLTFHHFL 1901
+G K+ F +C +L + G+ T N + K+DR L ND W F
Sbjct: 159 IGRKIR-AFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAY 217
Query: 1902 AEFGVPGVSNHSPIMVRLLEKLFLQKVPFKFKNFWRSN 2015
A FG P S+HS V L + K PF+F N++ N
Sbjct: 218 ANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHN 255
Score = 32.0 bits (71), Expect(2) = 2e-09
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = +2
Query: 1283 WNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANGGMDR 1462
WN+R N +R K +NK ++ET + + + W N
Sbjct: 8 WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67
Query: 1463 SFRIIVLWKSIEVQVSILMKTNRLIYCEVFTAD 1561
+I VLW V+V ++ ++ ++I CE+ D
Sbjct: 68 LGKIWVLWDP-SVKVVVIGRSLQMITCELLLPD 99
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 84.7 bits (208), Expect(3) = 4e-33
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 2965 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 3144
+P C KIDI K +DS +W F+ + A FP F W+ LC+ + +S+ +NG L G+F
Sbjct: 888 TPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFF 947
Query: 3145 PGRKGLCQGNPISPYLFVLTMEYLS 3219
+GL QG +SPYLFV+ M LS
Sbjct: 948 GSSRGLRQGCALSPYLFVICMNVLS 972
Score = 80.9 bits (198), Expect(3) = 4e-33
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Frame = +2
Query: 2522 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVRGLVTEAILEVF 2701
CS + +T E+++ F + +K+P DG T+ FK WS AI F
Sbjct: 738 CSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFF 797
Query: 2702 RIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGV 2878
G L +NA I++LIPK + +KDYRPISCCNV+ K + + PS +
Sbjct: 798 VKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQ 857
Query: 2879 TEGMLV*NRSMVHNILLCLELLKGY 2953
+ V R ++ N+LL EL+K Y
Sbjct: 858 NQSAFVKERLLMENVLLATELVKDY 882
Score = 26.9 bits (58), Expect(3) = 4e-33
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 3347
H KC T++ FADDLM+F G SI
Sbjct: 987 HPKCEKIGLTHLCFADDLMVFVDGHQWSI 1015
Score = 50.4 bits (119), Expect(2) = 2e-09
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +3
Query: 3528 KMLTVADCDPLIRQILSRIQHWIARHLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHK 3707
K +T AD PLI + ++I W AR LSY GR+ FW + LP + +
Sbjct: 1076 KQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIRE 1135
Query: 3708 I*TLCR*LLW 3737
I LC LW
Sbjct: 1136 IEKLCSAFLW 1145
Score = 42.0 bits (97), Expect(2) = 2e-09
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 3755 KKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIREYRLKH 3934
KK+ ++ ++CQ + GLG K + NK + K ++ S +W WI + ++
Sbjct: 1153 KKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLS--TQPSLWVTWIWTFIIRK 1210
Query: 3935 VGIWEIPVRLS-DSWWWSQLL 3994
W R S SW W +LL
Sbjct: 1211 GTFWSANERSSLGSWMWKKLL 1231
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 85.1 bits (209), Expect(3) = 1e-31
Identities = 37/89 (41%), Positives = 55/89 (61%)
Frame = +1
Query: 2953 FANSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSL 3132
++N SP K+D+ K +DS W FV + A P F+ W++ C+ + ++++ING
Sbjct: 581 WSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGN 640
Query: 3133 EGYFPGRKGLCQGNPISPYLFVLTMEYLS 3219
G+F KGL QG+P+SPYLFVL ME S
Sbjct: 641 GGFFKSTKGLRQGDPLSPYLFVLAMEAFS 669
Score = 80.5 bits (197), Expect(3) = 1e-31
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Frame = +2
Query: 2486 PSSLTQQD*YGSCSYYSTRGSSCSLTSM----EVKEAFFDIDASKAPNLDGCTTFLFKKC 2653
P + Q D SY + C L S +++ A F + +K+ DG T F
Sbjct: 419 PYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDS 478
Query: 2654 WSQVRGLVTEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQR 2830
WS V VT+AI E F G L+ NA + LIPK+ NP D+RPISC N + K R
Sbjct: 479 WSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIAR 538
Query: 2831 FCTGNVTYSKPSVVGVTEGMLV*NRSMVHNILLCLELLKGYS 2956
T + V+ + + RS+ N+LL +L+ GY+
Sbjct: 539 LLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYN 580
Score = 21.9 bits (45), Expect(3) = 1e-31
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 3261 HLKCRCTQTTYVSFADDLMLF---GYGDLPSIC 3350
H K +++ FADD+M+F G L IC
Sbjct: 684 HPKASNLSISHLMFADDVMIFFDGGSFSLHGIC 716
Score = 63.5 bits (153), Expect(2) = 4e-11
Identities = 59/164 (35%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Frame = +3
Query: 1581 VTFNYAANDVDGQRA*WT--INIDLAQSISE-PRLIFGDFNVVLNSVEKVVKSGAMCNVG 1751
V+ YAAN+V ++ W +N+ ++ I + P L+ GDFN VLN E + NV
Sbjct: 106 VSVVYAANEVASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEH--SNPVSLNVD 163
Query: 1752 SKLHHVFETC----QPQELRFLGNKLT*SN-SHTYC---KLDRALFNDSWFLTFHHFLAE 1907
+ F C + +LR+ GN T N SHT K+DR L NDSW F L
Sbjct: 164 INMRD-FRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGI 222
Query: 1908 FGVPGVSNHSPIMVRLLEKLFLQKVPFKFKNFWRSNI-FLSVGR 2036
FG S+H V L E K PFKF N+ N+ FL++ R
Sbjct: 223 FGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVR 266
Score = 34.7 bits (78), Expect(2) = 4e-11
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = +2
Query: 1271 NIGAWNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRRRVNNWESLVKKFKKDWLLDANG 1450
N+ WNIR N+ + K NK V+ET + + W N
Sbjct: 4 NLFCWNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENY 63
Query: 1451 GMDRSFRIIVLWKSIEVQVSILMKTNRLIYCEV 1549
+I V+W VQV ++ K+ ++I CEV
Sbjct: 64 AFSDLGKIWVMWDP-SVQVVVVAKSLQMITCEV 95
Score = 47.0 bits (110), Expect(2) = 2e-09
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +3
Query: 3528 KMLTVADCDPLIRQILSRIQHWIARHLSYLGRVXXXXXXXXXXKRFWSQIFPLPFIILHK 3707
+ L +A+ +PL+ +I +R + W+ + LS+ GR+ FW F LP + +
Sbjct: 772 RKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKR 831
Query: 3708 I*TLCR*LLWVAGNV 3752
I +LC LW +GN+
Sbjct: 832 IESLCSRFLW-SGNI 845
Score = 45.1 bits (105), Expect(2) = 2e-09
Identities = 25/88 (28%), Positives = 39/88 (44%)
Frame = +2
Query: 3737 GGWKRSKKSLVS*DNVCQLVENQGLGFKEVLS*NKATSCKFVFSCASGAAMDPIWCQWIR 3916
G +++K VS +C GLG + +L NK S + ++ A D +W W
Sbjct: 843 GNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLF--VAKDSLWADWQH 900
Query: 3917 EYRLKHVGIWEIPVRLSDSWWWSQLLHI 4000
+ L W + SDSW W +LL +
Sbjct: 901 LHHLSRGSFWAVEGGQSDSWTWKRLLSL 928