BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039452
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT40486.1| putative polyprotein [Solanum demissum]                116   2e-24
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop...   102   3e-20
dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis t...   100   9e-20
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t...   100   2e-19
emb|CAN79868.1| hypothetical protein VITISV_011481 [Vitis vinifera]    97   1e-18

>gb|AAT40486.1| putative polyprotein [Solanum demissum]
          Length = 1065

 Score =  116 bits (291), Expect = 2e-24
 Identities = 52/100 (52%), Positives = 71/100 (71%)
 Frame = +2

Query: 32  PFSAYYLDPSEGTGAVISPILLKGDNYEEWSRSLRNNLRAKNKLGFIDGTIIVPDTKSPD 211
           P S Y+L  ++ TG  I+P++LKG NYEEW++++RN  RAK KLGFIDG I  P  +  +
Sbjct: 4   PTSPYFLLSADHTGICITPVVLKGYNYEEWAKAMRNAFRAKKKLGFIDGLITQPKEEGFE 63

Query: 212 FDQWGIVNSMLVAWIVNTLDISIRSTVHFPNTVKSLWDDL 331
            D W  VNSML+ W+ NT+D S+RST+ +  TVK LW+DL
Sbjct: 64  LDDWYAVNSMLIVWVFNTIDPSLRSTISYMETVKELWEDL 103


>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
          Length = 1152

 Score =  102 bits (254), Expect = 3e-20
 Identities = 44/98 (44%), Positives = 66/98 (67%)
 Frame = +2

Query: 38  SAYYLDPSEGTGAVISPILLKGDNYEEWSRSLRNNLRAKNKLGFIDGTIIVPDTKSPDFD 217
           S YYL PS+    V++P+LL G+NYE W++  RNNL+AK KLGFIDGT+  P + SPD+ 
Sbjct: 23  SPYYLHPSDHPHHVLTPMLLNGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSDSPDYP 82

Query: 218 QWGIVNSMLVAWIVNTLDISIRSTVHFPNTVKSLWDDL 331
           +W   NSMLV W+  +LD  ++ ++   +  + +W+ L
Sbjct: 83  RWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESL 120


>dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 370

 Score =  100 bits (250), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 64/98 (65%)
 Frame = +2

Query: 38  SAYYLDPSEGTGAVISPILLKGDNYEEWSRSLRNNLRAKNKLGFIDGTIIVPDTKSPDFD 217
           S Y L  S+  G +I+ ++L GDNY EWS  + N L+AK K GFIDGTI  P + SPDF+
Sbjct: 28  SPYTLSNSDNPGTLITSVVLNGDNYNEWSEEMLNALQAKRKTGFIDGTIQKPASDSPDFE 87

Query: 218 QWGIVNSMLVAWIVNTLDISIRSTVHFPNTVKSLWDDL 331
            W  VNSM+V WI  +++  ++STV F +    LWD+L
Sbjct: 88  NWKTVNSMIVGWIRVSIEPKVKSTVTFISDAHLLWDEL 125


>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score =  100 bits (248), Expect = 2e-19
 Identities = 51/108 (47%), Positives = 67/108 (62%)
 Frame = +2

Query: 8   PPVTPRYQPFSAYYLDPSEGTGAVISPILLKGDNYEEWSRSLRNNLRAKNKLGFIDGTII 187
           P  TP     S Y +  S+  GA+IS ++LK DNY EW+  L N+L+AK KLGF+DGTI 
Sbjct: 7   PVTTP-----SPYGITASDNPGALISSVILKEDNYSEWAEELMNSLQAKQKLGFLDGTIP 61

Query: 188 VPDTKSPDFDQWGIVNSMLVAWIVNTLDISIRSTVHFPNTVKSLWDDL 331
            P T+ P    W   NSM++ WI  ++D +IRSTV F +  K LWD L
Sbjct: 62  KPTTE-PALSSWKAANSMIIGWIRTSIDPTIRSTVAFVSDAKDLWDSL 108


>emb|CAN79868.1| hypothetical protein VITISV_011481 [Vitis vinifera]
          Length = 154

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = +2

Query: 17  TPRYQPFSAYYLDPSEGTGAVISPILLKGDNYEEWSRSLRNNLRAKNKLGFIDGTIIVPD 196
           T   +P S  YL PS+  GA I+  +  G+NY+ W ++++N LRAKNKLG IDGT+  P 
Sbjct: 9   TKMIEPSSPLYLHPSDNPGATITTCVFNGENYDMWEKAVKNALRAKNKLGIIDGTVNKPK 68

Query: 197 TKS-PDFDQWGIVNSMLVAWIVNTLDISIRSTVHFPNTVKSLWDDL 331
            ++  + + W   NSM+++W+ N +D S+ S+V +  T K +W+DL
Sbjct: 69  GENGNELNAWEACNSMIISWMFNVIDKSLHSSVAYAQTAKDMWEDL 114