BLASTX nr result

ID: Bupleurum21_contig00039415 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039415
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004141694.1| PREDICTED: protein Brevis radix-like 2-like ...    95   5e-18
ref|XP_002276168.1| PREDICTED: protein Brevis radix-like 2 isofo...    95   5e-18
emb|CAN69466.1| hypothetical protein VITISV_042553 [Vitis vinifera]    95   5e-18
ref|XP_002521348.1| Ran GTPase binding protein, putative [Ricinu...    92   4e-17
ref|XP_002299599.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16

>ref|XP_004141694.1| PREDICTED: protein Brevis radix-like 2-like [Cucumis sativus]
           gi|449480538|ref|XP_004155924.1| PREDICTED: protein
           Brevis radix-like 2-like [Cucumis sativus]
          Length = 363

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 61/113 (53%), Positives = 72/113 (63%), Gaps = 8/113 (7%)
 Frame = -3

Query: 316 MLTCITSCSKHIGGGDGSLPPQQLHHHNDEDQTVAVPTPKHSIKALTSQIKDMALKP--- 146
           MLTCI +CSK +  G        LH    ED ++A P  K +IKALT+QIKD+ALK    
Sbjct: 1   MLTCI-ACSKQLNNGS-------LHQQEGED-SIATPRTKQTIKALTAQIKDIALKASGA 51

Query: 145 ---CKPCSGSS--NRKPNAADDYDSSSISERFHCSYKRTAGSSADSTPRVWGK 2
              CKPCSGSS  NRK   A+  DS+S S RFHCSYKRT   S++STPR WGK
Sbjct: 52  YKNCKPCSGSSSDNRKYKYAES-DSASDSARFHCSYKRT--GSSNSTPRQWGK 101


>ref|XP_002276168.1| PREDICTED: protein Brevis radix-like 2 isoform 2 [Vitis vinifera]
           gi|297743026|emb|CBI35893.3| unnamed protein product
           [Vitis vinifera]
          Length = 371

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 9/114 (7%)
 Frame = -3

Query: 316 MLTCITSCSKHIGGGDGSLPPQQLHHHND-EDQTVAVPTPKHSIKALTSQIKDMALKP-- 146
           MLTCI +CSK + G       + LH   + E + VA P+ KH+IKALT+QIKDMALK   
Sbjct: 1   MLTCI-ACSKQVSG-------RSLHEQEEGEGEAVATPSTKHAIKALTAQIKDMALKASG 52

Query: 145 ----CKPCSGSS--NRKPNAADDYDSSSISERFHCSYKRTAGSSADSTPRVWGK 2
               CKPCSGSS  N+  N AD  +S+S S RFHCSY+RT  SS  STPR+ GK
Sbjct: 53  AYRNCKPCSGSSGQNQDRNYADS-ESASDSARFHCSYRRTGSSS--STPRLLGK 103


>emb|CAN69466.1| hypothetical protein VITISV_042553 [Vitis vinifera]
          Length = 363

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 9/114 (7%)
 Frame = -3

Query: 316 MLTCITSCSKHIGGGDGSLPPQQLHHHND-EDQTVAVPTPKHSIKALTSQIKDMALKP-- 146
           MLTCI +CSK + G       + LH   + E + VA P+ KH+IKALT+QIKDMALK   
Sbjct: 1   MLTCI-ACSKQVSG-------RSLHEQEEGEGEAVATPSTKHAIKALTAQIKDMALKASG 52

Query: 145 ----CKPCSGSS--NRKPNAADDYDSSSISERFHCSYKRTAGSSADSTPRVWGK 2
               CKPCSGSS  N+  N AD  +S+S S RFHCSY+RT  SS  STPR+ GK
Sbjct: 53  AYRNCKPCSGSSGQNQDRNYADS-ESASDSARFHCSYRRTGSSS--STPRLLGK 103


>ref|XP_002521348.1| Ran GTPase binding protein, putative [Ricinus communis]
           gi|223539426|gb|EEF41016.1| Ran GTPase binding protein,
           putative [Ricinus communis]
          Length = 372

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 55/112 (49%), Positives = 71/112 (63%), Gaps = 7/112 (6%)
 Frame = -3

Query: 316 MLTCITSCSKHIGGGDGSLPPQQLHHHNDEDQTVAVPTPKHSIKALTSQIKDMALKP--- 146
           MLTCI +CSK +   +GSL   Q     D+D  +  P  + +IKA+T+QIKDMA+K    
Sbjct: 1   MLTCI-ACSKQLN--NGSL--HQREREEDDDDAMETPRTRQTIKAITAQIKDMAIKASGA 55

Query: 145 ---CKPCSGSSNRKPNA-ADDYDSSSISERFHCSYKRTAGSSADSTPRVWGK 2
              CKPCSGSSN   N    + D+ S S RFHCSY+RT   S++STPR+WGK
Sbjct: 56  YRNCKPCSGSSNNNHNENYAESDAISDSARFHCSYRRT--GSSNSTPRLWGK 105


>ref|XP_002299599.1| predicted protein [Populus trichocarpa] gi|222846857|gb|EEE84404.1|
           predicted protein [Populus trichocarpa]
          Length = 170

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 58/113 (51%), Positives = 72/113 (63%), Gaps = 8/113 (7%)
 Frame = -3

Query: 316 MLTCITSCSKHIGGGDGSLPPQQLHHHNDED-QTVAVPTPKHSIKALTSQIKDMALKP-- 146
           MLTCI +CSK +   +GSL  QQ     D D   +  P  K +IKALT+QIKDMA+K   
Sbjct: 1   MLTCI-ACSKQLN--NGSL--QQREREEDVDVAALETPRTKQAIKALTAQIKDMAVKASG 55

Query: 145 ----CKPCSGSSNRKPNAA-DDYDSSSISERFHCSYKRTAGSSADSTPRVWGK 2
               CKPCSGSSN   N    + D++S S RFHCSY+RT   S++STPR+WGK
Sbjct: 56  AYRNCKPCSGSSNNNSNRNYAESDAASDSARFHCSYRRT--GSSNSTPRMWGK 106


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