BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039349
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    70   2e-10
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    65   6e-09
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    64   1e-08
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    59   4e-07
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                58   9e-07

>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 23/147 (15%)
 Frame = +2

Query: 2    EECISL*YFLEKHAKGGQLNKYLPPRQEQAQ-----PNPAQT-------KHQILTIVGGN 145
            EEC  + + LEKH    + NKY   R ++ Q     P   +        K  I  I GG+
Sbjct: 643  EECRQMTHLLEKHVNRYE-NKYEGARDQRGQNAIKAPQVMKIEAIEEVPKRVINAITGGS 701

Query: 146  NSPISDAQE----------IYTISTNKPPEECN-VISFSDADYEGSDPNQQEALVVTIEI 292
            +  +   ++          + TI  +KPP     VISF   D EG     Q+ LVV++EI
Sbjct: 702  SLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEI 761

Query: 293  AECDVAKTLVDNGSSADVIFLHAFKRM 373
            A+C+V + L+D GSSADV+F  AFK+M
Sbjct: 762  AQCEVQRVLIDGGSSADVLFYDAFKKM 788


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
 Frame = +2

Query: 2    EECISL*YFLEKHAKGGQLNKYLPPRQEQAQPNPAQT-------------KHQILTIVGG 142
            EEC  + + LEKH    + +KY   R ++ Q N  +              K  I  I GG
Sbjct: 643  EECRQMTHLLEKHVNRYE-DKYEGARDQRGQ-NAIEAPQVMKIEAIEEVPKRVINAITGG 700

Query: 143  NNSPISD-------AQEIYTIST----NKPPEECNVISFSDADYEGSDPNQQEALVVTIE 289
            ++  +          +++  + T    N P     VISF   D EG     Q+ LVV++E
Sbjct: 701  SSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVE 760

Query: 290  IAECDVAKTLVDNGSSADVIFLHAFKRM 373
            IA+C+V + L+D GSSADV+F  AFK+M
Sbjct: 761  IAQCEVQRVLIDGGSSADVLFYDAFKKM 788


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
 Frame = +2

Query: 2   EECISL*YFLEKHAK----------GGQLNKYLPPRQEQAQPNPAQTKHQILTIVGGNNS 151
           EEC  +   +EKH +          GGQ N     +  + +      K  I  I GG++ 
Sbjct: 162 EECRQMASLVEKHVRQYDGKYEGVQGGQ-NMLEGQKVMKIEAIEEAPKRVINAITGGSSL 220

Query: 152 PISD-------AQEIYTISTNK---PPEECN-VISFSDADYEGSDPNQQEALVVTIEIAE 298
            +          ++I+ + T+    PP   N VISF   D EG     Q+ LV+++EIA+
Sbjct: 221 GVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQ 280

Query: 299 CDVAKTLVDNGSSADVIFLHAFKRM 373
           C+V + LVD GSSADV+F  AFK+M
Sbjct: 281 CEVQRVLVDGGSSADVLFYDAFKKM 305


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
 Frame = +2

Query: 197 PPEECN-VISFSDADYEGSDPNQQEALVVTIEIAECDVAKTLVDNGSSADVIFLHAFKRM 373
           PP   N VISF   D EG     Q+ LV+++EI +C+V + LVD GSSADV+F  AFK+M
Sbjct: 80  PPAYSNTVISFGPEDAEGILFPHQDPLVISVEITQCEVQRVLVDGGSSADVLFYDAFKKM 139


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/69 (37%), Positives = 44/69 (63%)
 Frame = +2

Query: 167 QEIYTISTNKPPEECNVISFSDADYEGSDPNQQEALVVTIEIAECDVAKTLVDNGSSADV 346
           Q +++  T + P     I+F+D D+   DP+Q + +V+T+EI +  +AK LVD GSS D+
Sbjct: 606 QSVHSTPTQRRPH-IPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDI 664

Query: 347 IFLHAFKRM 373
           ++   FK+M
Sbjct: 665 LYWETFKKM 673