BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039332
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511542.1| pentatricopeptide repeat-containing protein,...   186   2e-45
ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   173   2e-41
gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indi...   148   4e-34
ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group] g...   148   4e-34
ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [S...   131   5e-29

>ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550657|gb|EEF52144.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  186 bits (472), Expect = 2e-45
 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 22/171 (12%)
 Frame = +2

Query: 2   PQPNQSLYNSIISALSKLSLNNET----------------------IRSCSSLLAVNLGK 115
           PQP Q LYNS+IS  SKLSL+ +                       I++CSSLLA+++GK
Sbjct: 57  PQPGQILYNSLISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGK 116

Query: 116 QVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISGYSKSG 295
           QVHSL V CG++  VYVQ +L+DFYAK+G++ SA+++FDG+++KD I YNCLI+GYSK+G
Sbjct: 117 QVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAG 176

Query: 296 DVLKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           DV+ AR+LFD M+++TVVSWN+M+SCYAH+GD  E  + FE MQ E    N
Sbjct: 177 DVIAARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPN 227



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
 Frame = +2

Query: 23  YNSIISALSKL-----------SLNNETIRSCSSLLAVNLGKQVHSLGVSCGLNSTVYVQ 169
           YN +I+  SK            S+   T+ S +++++       H+  ++ GL +   +Q
Sbjct: 165 YNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISC----YAHNGDLNEGLKTFERMQ 220

Query: 170 A-----------ALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISG-----YSKSGDV 301
           A            L+   AK+GD++   ++    I  +++C N ++S      Y K G V
Sbjct: 221 AEDISPNEITLVTLLSICAKLGDLEMGLRI-KKYIEDNNLCVNMIVSTAILEMYVKCGAV 279

Query: 302 LKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
             ARK FD M  + +V+W++M++ YA +G   E   +FE M+ E  + N
Sbjct: 280 DDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPN 328


>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  173 bits (438), Expect = 2e-41
 Identities = 85/171 (49%), Positives = 121/171 (70%), Gaps = 22/171 (12%)
 Frame = +2

Query: 2   PQPNQSLYNSIISALSKLSLNNETIR----------------------SCSSLLAVNLGK 115
           P P+Q ++ S I+A S+LSLNNE +R                      SC+SLLA+++GK
Sbjct: 57  PHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGK 116

Query: 116 QVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISGYSKSG 295
           QVHSL +  G +S+V+ Q ALI+FYAK+ D+ SA+ +FDG+++KD+I YNCLIS YS+SG
Sbjct: 117 QVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSG 176

Query: 296 DVLKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           +VL AR+LFD+M D+++VSWN+M+SCYA +GDY + + IF+ MQ E C  N
Sbjct: 177 EVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPN 227



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +2

Query: 74  IRSCSSLLAVNLGKQVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDS 253
           + +C+ L +V  G+++ S   S GL S VYV +AL+  Y+K G+I  A+Q+FD +  +D+
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 254 ICYNCLISGYSKSGDVLKARKLFDEMSDKTV----VSWNSMLSCYAHSGDYCEVFRIFET 421
           + +N +I G + +G    A  L++ M +  V    +++  +++   H+G        F +
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRS 455

Query: 422 MQ 427
           M+
Sbjct: 456 MR 457



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
 Frame = +2

Query: 83  CSSLLAVNLGKQVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICY 262
           C+ L  + +G ++  L  +  L S + V  A+++ Y K G +D  + VFD +  +D + +
Sbjct: 238 CAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTW 297

Query: 263 NCLISGYSKSGDVLKARKLFDEMSDKTV----VSWNSMLSCYAHSGDYCEVFRIFETMQI 430
           + +I+GY+++G   +A +LF+ M    +    V+  S+LS  A  G      RI   ++ 
Sbjct: 298 SAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVES 357

Query: 431 EGCRAN 448
            G  +N
Sbjct: 358 RGLISN 363


>gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  148 bits (374), Expect = 4e-34
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 22/171 (12%)
 Frame = +2

Query: 2   PQPNQSLYNSIISALSKLSLNNE----------------------TIRSCSSLLAVNLGK 115
           P+P  +L  ++ISALS+L  + E                       ++SC+ L A   GK
Sbjct: 46  PRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGK 105

Query: 116 QVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISGYSKSG 295
           QVH   +  GL   ++VQ AL+DFYAK GD+D A +VFD + +KD I  NCLI+GYSKSG
Sbjct: 106 QVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSG 165

Query: 296 DVLKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           DV+KAR+LFD M  +T  SWNSM++CYAH G+Y E  R+F  M  EG R N
Sbjct: 166 DVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
 Frame = +2

Query: 134 VSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVI---LKDSICYNCLISGYSKSGDVL 304
           +S G        A +    AK GD+++ K     +    L++ I +  L+  Y K   + 
Sbjct: 209 LSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAID 268

Query: 305 KARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           +AR+ FD M  + VV+W++M++ YA +G   E   +FE M+   C+ N
Sbjct: 269 EARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPN 316


>ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
           gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza
           sativa Japonica Group] gi|125571815|gb|EAZ13330.1|
           hypothetical protein OsJ_03251 [Oryza sativa Japonica
           Group]
          Length = 608

 Score =  148 bits (374), Expect = 4e-34
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 22/171 (12%)
 Frame = +2

Query: 2   PQPNQSLYNSIISALSKLSLNNE----------------------TIRSCSSLLAVNLGK 115
           P+P  +L  ++ISALS+L  + E                       ++SC+ L A   GK
Sbjct: 46  PRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGK 105

Query: 116 QVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISGYSKSG 295
           QVH   +  GL   ++VQ AL+DFYAK GD+D A +VFD + +KD I  NCLI+GYSKSG
Sbjct: 106 QVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSG 165

Query: 296 DVLKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           DV+KAR+LFD M  +T  SWNSM++CYAH G+Y E  R+F  M  EG R N
Sbjct: 166 DVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
 Frame = +2

Query: 134 VSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVI---LKDSICYNCLISGYSKSGDVL 304
           +S G        A +    AK GD+++ K     +    L++ I +  L+  Y K   + 
Sbjct: 209 LSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAID 268

Query: 305 KARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           +AR+ FD M  + VV+W++M++ YA +G   E   +FE M+   C+ N
Sbjct: 269 EARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPN 316


>ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
           gi|241930382|gb|EES03527.1| hypothetical protein
           SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  131 bits (330), Expect = 5e-29
 Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 22/171 (12%)
 Frame = +2

Query: 2   PQPNQSLYNSIISALSKLSLNNETI----------------------RSCSSLLAVNLGK 115
           P+P  +L  + +S LSKLSL+ E I                      +SC+   A   G 
Sbjct: 135 PRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGS 194

Query: 116 QVHSLGVSCGLNSTVYVQAALIDFYAKVGDIDSAKQVFDGVILKDSICYNCLISGYSKSG 295
           Q H   +  G+   V+VQ AL+DFYAK GD+DSA   F  + +KD I  NCLI+GYSKSG
Sbjct: 195 QTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSG 254

Query: 296 DVLKARKLFDEMSDKTVVSWNSMLSCYAHSGDYCEVFRIFETMQIEGCRAN 448
           DV +AR+LFD M  +T  SWNSM++CYAH G++ E   +F+ M  EG   N
Sbjct: 255 DVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPN 305