BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039223
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi...    90   5e-21
ref|XP_002511573.1| pentatricopeptide repeat-containing protein,...    83   6e-18
ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arab...    75   7e-12
ref|NP_177599.1| pentatricopeptide repeat-containing protein [Ar...    71   8e-11
tpg|DAA61428.1| TPA: hypothetical protein ZEAMMB73_429908 [Zea m...    67   1e-09

>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
           gi|297733984|emb|CBI15231.3| unnamed protein product
           [Vitis vinifera]
          Length = 893

 Score = 90.1 bits (222), Expect(2) = 5e-21
 Identities = 48/82 (58%), Positives = 53/82 (64%)
 Frame = -2

Query: 250 QENFQECLRPDKFSTSSVLSIIDSPSLGRQIQCFTLKXXXXXXXXXXXXXSTMYSRCGHL 71
           Q   QE LRPDKF +SSVLSIIDS SLGR I C+ LK              TMYS+CG L
Sbjct: 440 QRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSL 499

Query: 70  DESYRTFEQIAHKDIVSWASMI 5
           +ESY  FEQ+  KD VSWASMI
Sbjct: 500 EESYTVFEQMPDKDNVSWASMI 521



 Score = 35.8 bits (81), Expect(2) = 5e-21
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -3

Query: 354 ELVFKEAER-KNVDTWASMISACAKHGSSESAITLYKRIFR 235
           E VF+E E  KN+  WA MISA A+ GS+  A+ L++R+ +
Sbjct: 404 ERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQ 444



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 220 DKFSTSSVL---SIIDSPSLGRQIQCFTLKXXXXXXXXXXXXXSTMYSRCGHLDESYRTF 50
           D F+ SSV+   +I++S  +G Q+     K              TMYS+CG +DE ++ F
Sbjct: 649 DSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVF 708

Query: 49  EQIAHKDIVSWASMI 5
           EQI   D++SW +MI
Sbjct: 709 EQIEKPDLISWTAMI 723


>ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550688|gb|EEF52175.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 954

 Score = 82.8 bits (203), Expect(2) = 6e-18
 Identities = 41/79 (51%), Positives = 51/79 (64%)
 Frame = -2

Query: 238 QECLRPDKFSTSSVLSIIDSPSLGRQIQCFTLKXXXXXXXXXXXXXSTMYSRCGHLDESY 59
           Q+ LRPDKF  SSVLS+IDS  LGR+I C+ LK              TMYS+CG + +SY
Sbjct: 447 QQGLRPDKFCLSSVLSVIDSLYLGREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSY 506

Query: 58  RTFEQIAHKDIVSWASMIA 2
           + FEQI  KD +SW SMI+
Sbjct: 507 KVFEQIPVKDNISWTSMIS 525



 Score = 32.7 bits (73), Expect(2) = 6e-18
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 354 ELVFKEAER-KNVDTWASMISACAKHGSSESAITLYKRIFR 235
           E+VF+E E  KN   W  MIS+ AK+  S+SAI L  ++ +
Sbjct: 407 EMVFREMEGVKNPGIWTIMISSFAKNQDSQSAIDLLLKLLQ 447


>ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata] gi|297334827|gb|EFH65245.1| hypothetical protein
           ARALYDRAFT_476599 [Arabidopsis lyrata subsp. lyrata]
          Length = 717

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/79 (45%), Positives = 49/79 (62%)
 Frame = -2

Query: 238 QECLRPDKFSTSSVLSIIDSPSLGRQIQCFTLKXXXXXXXXXXXXXSTMYSRCGHLDESY 59
           QE L PD+FS  S+LS++D  +LG+Q+  +TLK              TMYS+CG L+ESY
Sbjct: 268 QEGLNPDEFSVCSLLSVLDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESY 327

Query: 58  RTFEQIAHKDIVSWASMIA 2
             F++I  KD   WASMI+
Sbjct: 328 SLFQEIPFKDNACWASMIS 346


>ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
           gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical
           protein; 84160-81473 [Arabidopsis thaliana]
           gi|332197493|gb|AEE35614.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/79 (44%), Positives = 49/79 (62%)
 Frame = -2

Query: 238 QECLRPDKFSTSSVLSIIDSPSLGRQIQCFTLKXXXXXXXXXXXXXSTMYSRCGHLDESY 59
           QE LR D+FS  S+LS++D  +LG+Q+  +TLK              T+YS+CG L+ESY
Sbjct: 446 QEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESY 505

Query: 58  RTFEQIAHKDIVSWASMIA 2
           + F+ I  KD   WASMI+
Sbjct: 506 KLFQGIPFKDNACWASMIS 524


>tpg|DAA61428.1| TPA: hypothetical protein ZEAMMB73_429908 [Zea mays]
          Length = 817

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
 Frame = -2

Query: 259 HFIQENFQ-------ECLRPDKFSTSSVLSIIDSPSLGRQIQCFTLKXXXXXXXXXXXXX 101
           H +Q + Q       +CLRP+    +SV S +DS  LGRQ+    +K             
Sbjct: 356 HSVQRSIQLLRRMLFQCLRPNDKCYASVFSSVDSSELGRQLHPLVIKDGFIHVVLVASAL 415

Query: 100 STMYSRCGHLDESYRTFEQIAHKDIVSWASMIA 2
           STMYSRC  L +SY+ FE++  +D VSW SMIA
Sbjct: 416 STMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIA 448