BLASTX nr result
ID: Bupleurum21_contig00039148
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00039148
(311 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|2... 158 5e-37
emb|CBI16128.3| unnamed protein product [Vitis vinifera] 154 7e-36
emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera] 154 7e-36
ref|XP_002532847.1| pentatricopeptide repeat-containing protein,... 151 5e-35
ref|NP_192906.1| pentatricopeptide repeat-containing protein [Ar... 144 7e-33
>ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|222844663|gb|EEE82210.1|
predicted protein [Populus trichocarpa]
Length = 564
Score = 158 bits (399), Expect = 5e-37
Identities = 70/101 (69%), Positives = 89/101 (88%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
D+YSFGIM+K CC++ + ++F++L +L++MG SPNVVIYT+LIDGCCKNG+IE+AR F
Sbjct: 161 DVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFF 220
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMKID 3
KM E+GLVANQYTFT+LING FK GLKKDGF+LFEKMKI+
Sbjct: 221 DKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKIN 261
Score = 60.8 bits (146), Expect = 1e-07
Identities = 28/99 (28%), Positives = 52/99 (52%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
++Y++ ++ C ++CRAF++ + E G NVV Y +LI G C+ + +A +L
Sbjct: 266 NLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLV 325
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMK 9
+M++ + N T+ LI GF G L +++K
Sbjct: 326 DQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLK 364
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/98 (29%), Positives = 52/98 (53%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
D+Y +G+++ C M + ++ R + EM P+ VIY ++I G CK +A +L
Sbjct: 441 DVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLL 500
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKM 12
+M GLV N +++ +I K+G ++ L +KM
Sbjct: 501 REMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKM 538
>emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 154 bits (389), Expect = 7e-36
Identities = 70/101 (69%), Positives = 86/101 (85%)
Frame = -1
Query: 308 LDIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQL 129
LD+YSFGIM+K CC+ + + FEVL +EEMG SPNVV+YT+LIDGCCKNG+IE+ +QL
Sbjct: 162 LDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQL 221
Query: 128 FSKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMKI 6
F KM EL +VANQYT+T+LINGFFK GLKKDG EL+EKMK+
Sbjct: 222 FYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKL 262
Score = 63.9 bits (154), Expect = 1e-08
Identities = 31/99 (31%), Positives = 54/99 (54%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
++Y++ M+ CC+ ++ AFE+ + E G + NVV Y +LI G C+ + +A +L
Sbjct: 268 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 327
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMK 9
+M+ GL N ++ LI+G+ G LF +MK
Sbjct: 328 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK 366
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/95 (30%), Positives = 54/95 (56%)
Frame = -1
Query: 296 SFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLFSKM 117
++ I++ + +++R +E G SP+ V YT L+D ++ IE+A Q++S M
Sbjct: 376 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 435
Query: 116 RELGLVANQYTFTILINGFFKNGLKKDGFELFEKM 12
+ GLVA+ Y + +LI+G G K+ +LF+ +
Sbjct: 436 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 470
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
DIY +G+++ C +M A ++ + L+EM PN VIY ++I G CK G +A +L
Sbjct: 443 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 502
Query: 125 SKMRELGLVAN--QYTFTILI 69
+M E G+V N Y TI I
Sbjct: 503 KEMGENGMVPNVASYNSTIQI 523
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
++ ++ ++ C + A ++ ++ G SPN++ Y +LIDG C G +++A LF
Sbjct: 303 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 362
Query: 125 SKMRELGLVANQYTFTILINGF 60
++M+ G + T+ ILI GF
Sbjct: 363 NQMKSSGQSPSLATYNILIAGF 384
>emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 154 bits (389), Expect = 7e-36
Identities = 70/101 (69%), Positives = 86/101 (85%)
Frame = -1
Query: 308 LDIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQL 129
LD+YSFGIM+K CC+ + + FEVL +EEMG SPNVV+YT+LIDGCCKNG+IE+ +QL
Sbjct: 149 LDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQL 208
Query: 128 FSKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMKI 6
F KM EL +VANQYT+T+LINGFFK GLKKDG EL+EKMK+
Sbjct: 209 FYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKL 249
Score = 63.9 bits (154), Expect = 1e-08
Identities = 31/99 (31%), Positives = 54/99 (54%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
++Y++ M+ CC+ ++ AFE+ + E G + NVV Y +LI G C+ + +A +L
Sbjct: 255 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 314
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMK 9
+M+ GL N ++ LI+G+ G LF +MK
Sbjct: 315 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK 353
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/95 (30%), Positives = 54/95 (56%)
Frame = -1
Query: 296 SFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLFSKM 117
++ I++ + +++R +E G SP+ V YT L+D ++ IE+A Q++S M
Sbjct: 363 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 422
Query: 116 RELGLVANQYTFTILINGFFKNGLKKDGFELFEKM 12
+ GLVA+ Y + +LI+G G K+ +LF+ +
Sbjct: 423 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 457
Score = 57.4 bits (137), Expect = 1e-06
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
DIY +G+++ C +M A ++ + L+EM PN VIY ++I G CK G +A +L
Sbjct: 430 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 489
Query: 125 SKMRELGLVAN--QYTFTILI 69
+M E G+V N Y TI I
Sbjct: 490 KEMGENGMVPNVASYNSTIXI 510
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
++ ++ ++ C + A ++ ++ G SPN++ Y +LIDG C G +++A LF
Sbjct: 290 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 349
Query: 125 SKMRELGLVANQYTFTILINGF 60
++M+ G + T+ ILI GF
Sbjct: 350 NQMKSSGQSPSLATYNILIAGF 371
>ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527384|gb|EEF29525.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 505
Score = 151 bits (382), Expect = 5e-35
Identities = 67/102 (65%), Positives = 87/102 (85%)
Frame = -1
Query: 308 LDIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQL 129
LD+Y++GIM+K CC+ + FE+L LE+MG SPNVVIYT+LIDGCCKNG++ +A+ L
Sbjct: 150 LDVYTYGIMIKGCCEAGVFYKGFELLTDLEKMGLSPNVVIYTTLIDGCCKNGDVRRAKLL 209
Query: 128 FSKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMKID 3
F+KM E+ LVANQYT+T+LINGFFK GL+KDGFELFEKM++D
Sbjct: 210 FNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFELFEKMQLD 251
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/99 (28%), Positives = 52/99 (52%)
Frame = -1
Query: 305 DIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLF 126
D++ +G+++ C M A ++ R + EM PN V+Y ++I+G CK G +A +
Sbjct: 382 DVHIYGVLLHGLCVKGNMKEASKLFRSMAEMKLEPNEVVYNTMINGYCKAGNSFRALRFL 441
Query: 125 SKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMK 9
+M + LV N +++ I K+G ++ L KM+
Sbjct: 442 KEMEDKRLVPNVASYSSTIGILCKDGKWQEAEILLNKMR 480
>ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g11690 gi|4539460|emb|CAB39940.1| putative protein
[Arabidopsis thaliana] gi|7267869|emb|CAB78212.1|
putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 144 bits (363), Expect = 7e-33
Identities = 65/103 (63%), Positives = 87/103 (84%)
Frame = -1
Query: 311 LLDIYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQ 132
+LD+YSFGI++K CC+ E+ ++F++L L E GFSPNVVIYT+LIDGCCK GEIE+A+
Sbjct: 160 VLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 131 LFSKMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKMKID 3
LF +M +LGLVAN+ T+T+LING FKNG+KK GFE++EKM+ D
Sbjct: 220 LFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED 262
Score = 63.9 bits (154), Expect = 1e-08
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = -1
Query: 302 IYSFGIMVKCCCDHNEMCRAFEVLRMLEEMGFSPNVVIYTSLIDGCCKNGEIEQARQLFS 123
+ ++ I+V C + A ++++ +EE G P+ V YT LID ++ +E+A QL
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432
Query: 122 KMRELGLVANQYTFTILINGFFKNGLKKDGFELFEKM 12
M ELGLV + +T+++LI+GF G + LF+ M
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469