BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039060
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...    80   2e-13
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...    79   4e-13
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...    79   4e-13
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  72   4e-11
gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subc...    71   8e-11

>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 34/68 (50%), Positives = 48/68 (70%)
 Frame = +1

Query: 16  DNTTLRVQE*CLVKFSVGKFRDLVMCDVLPVKLCHLILGRPWLVDRDVHHVARANTYTIV 195
           D+  L+V +  L+  S+GK++D V+CDV+P+  CH++LGRPW  DRD  H  + N YTI 
Sbjct: 455 DDGELKVHKQALISISIGKYQDDVLCDVIPMHACHILLGRPWQYDRDTLHHGKTNKYTIH 514

Query: 196 KRGQKYTL 219
           K G+KYTL
Sbjct: 515 KGGKKYTL 522


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 32/72 (44%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
 Frame = +1

Query: 28  LRVQE*CLVKFSVGKFRDLVMCDVLPVKLCHLILGRPWLVDRDVHHVARANTYTIVKRGQ 207
           ++V + C++ F+VG++ D ++CDV+P++ CH++LGRPW  DRD  H  R N Y+++  G+
Sbjct: 477 VQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGK 536

Query: 208 KYTL-HCAPSHV 240
           KYTL   +PS V
Sbjct: 537 KYTLAPLSPSQV 548


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 32/72 (44%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
 Frame = +1

Query: 28  LRVQE*CLVKFSVGKFRDLVMCDVLPVKLCHLILGRPWLVDRDVHHVARANTYTIVKRGQ 207
           ++V + C++ F+VG++ D ++CDV+P++ CH++LGRPW  DRD  H  R N Y+++  G+
Sbjct: 477 VQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGK 536

Query: 208 KYTL-HCAPSHV 240
           KYTL   +PS V
Sbjct: 537 KYTLAPLSPSQV 548


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +1

Query: 28  LRVQE*CLVKFSVGK-FRDLVMCDVLPVKLCHLILGRPWLVDRDVHHVARANTYTIVKRG 204
           +RV + CLV FS+GK + D  +CDVLP+  CHL+LGRPW  DRD  H  R NTYT   R 
Sbjct: 443 VRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRS 502

Query: 205 QKYTLHCAPSHVPTSQP 255
           +K  L   P  +  + P
Sbjct: 503 RKVILTPLPPVLKHTTP 519


>gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 32/68 (47%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  DNTTLRVQE*CLVKFSVGKFRDLVMCDVLPVKLCHLILGRPWLVDRDVHHVARANTYTIV 195
           D+   +V + C V FS+G + D V CDV+P++ C L+LGRPW  D D  H  R+N YT V
Sbjct: 367 DSGRAKVTQVCRVSFSIGSYADSVDCDVVPMQACSLLLGRPWEHDNDATHHGRSNKYTFV 426

Query: 196 KRGQKYTL 219
             G+K TL
Sbjct: 427 HNGKKITL 434