BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039043
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531422.1| pentatricopeptide repeat-containing protein,...   155   2e-36
ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-32
ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-32
ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containi...   143   2e-32
emb|CBI24389.3| unnamed protein product [Vitis vinifera]              143   2e-32

>ref|XP_002531422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528972|gb|EEF30964.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  155 bits (393), Expect = 2e-36
 Identities = 71/127 (55%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
 Frame = -3

Query: 378 EACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHVID-KDTV 202
           EAC    RY EA Q+H LVL++GF+FD+FLGN+ I MYC  GC+D A ++F +++ KD V
Sbjct: 226 EACRHFGRYREAMQVHGLVLRIGFEFDIFLGNSIIAMYCEFGCMDEAKRMFQMMNNKDVV 285

Query: 201 SWNSIIAGCVQADDIDGAFELFNQMPEKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQG 22
           SWNS+I+G +Q D+I+ A++LF ++P KDV SWTTMI GFS+KG ++  I LF++MP++ 
Sbjct: 286 SWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTMITGFSAKGNVQKGIQLFKIMPEK- 344

Query: 21  DDVAWTA 1
           DDVAWTA
Sbjct: 345 DDVAWTA 351



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = -3

Query: 285 NTFITMYCRLGCIDAAAKIFH-VIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVY 109
           N  I+ Y ++G ++ A K+F   ++KD VSW+S++ G  +   I  A ELFN MP ++V 
Sbjct: 126 NAMISGYLKVGRLEEAIKVFEGTVEKDVVSWSSMVDGYCKKGRIFEARELFNMMPVRNVV 185

Query: 108 SWTTMIKGFSSKGLIENSIDLF 43
           +WT+MI G+ + G  EN   LF
Sbjct: 186 TWTSMIDGYMNVGFFENGFSLF 207


>ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  137 bits (346), Expect(2) = 1e-32
 Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
 Frame = -3

Query: 381 VEACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHV-IDKDT 205
           +EACG   RY E  Q+H LVL +GFD D +L N+ ITMY R   IDAAAK F + + KD 
Sbjct: 281 LEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDI 340

Query: 204 VSWNSIIAGCVQADDIDGAFELFNQMPEKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQ 25
           V+WNS+I G VQ+ +++ A  LF  MP+KDV SWTT+I GF+S+G I+  I LF++MP++
Sbjct: 341 VTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEK 400

Query: 24  GDDVAWTA 1
            D +AWTA
Sbjct: 401 -DAIAWTA 407



 Score = 26.9 bits (58), Expect(2) = 1e-32
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 449 FRFFVHMRHEDSVEVNCQTLTILLK 375
           F  F++MR E  VEVN  TLT+LL+
Sbjct: 259 FILFLNMRRE-GVEVNATTLTVLLE 282



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = -3

Query: 285 NTFITMYCRLGCIDAAAKIFH-VIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVY 109
           N  I  Y ++G ++ A +IF  + +KD VSW+S+I+G  +   I  A +LF++MP+++V 
Sbjct: 181 NVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVV 240

Query: 108 SWTTMIKGFSSKGLIENSIDLFELMPDQGDDV 13
           +WT MI G+     +++   LF  M  +G +V
Sbjct: 241 TWTLMIDGYMKMNFLKDGFILFLNMRREGVEV 272



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = -3

Query: 285 NTFITMYCRLGCIDAAAKIFHVI-DKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVY 109
           N+ IT   R GCI  A  IF+ + +K+TVSW +++    +  +I+ A E+FN++P+ +V 
Sbjct: 59  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVA 118

Query: 108 SWTTMIKGFSSKGLIENSIDLFELMPDQ 25
           S+  MI  +  + +++ + +LF  MP +
Sbjct: 119 SYNAMITAYHRRNMVDEAFELFSSMPQR 146



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/93 (37%), Positives = 49/93 (52%)
 Frame = -3

Query: 282 TFITMYCRLGCIDAAAKIFHVIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVYSW 103
           T IT +   G  D A K+ H      VS N +I G  +   ++ A  +F+ M EKDV SW
Sbjct: 153 TMITGFVHAGMFDMAEKL-HREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSW 211

Query: 102 TTMIKGFSSKGLIENSIDLFELMPDQGDDVAWT 4
           ++MI G    G I  +  LF+ MPD+ + V WT
Sbjct: 212 SSMISGLCRVGKIVEARKLFDKMPDR-NVVTWT 243


>ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  137 bits (346), Expect(2) = 1e-32
 Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
 Frame = -3

Query: 381 VEACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHV-IDKDT 205
           +EACG   RY E  Q+H LVL +GFD D +L N+ ITMY R   IDAAAK F + + KD 
Sbjct: 273 LEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDI 332

Query: 204 VSWNSIIAGCVQADDIDGAFELFNQMPEKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQ 25
           V+WNS+I G VQ+ +++ A  LF  MP+KDV SWTT+I GF+S+G I+  I LF++MP++
Sbjct: 333 VTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEK 392

Query: 24  GDDVAWTA 1
            D +AWTA
Sbjct: 393 -DAIAWTA 399



 Score = 26.9 bits (58), Expect(2) = 1e-32
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 449 FRFFVHMRHEDSVEVNCQTLTILLK 375
           F  F++MR E  VEVN  TLT+LL+
Sbjct: 251 FILFLNMRRE-GVEVNATTLTVLLE 274



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = -3

Query: 285 NTFITMYCRLGCIDAAAKIFH-VIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVY 109
           N  I  Y ++G ++ A +IF  + +KD VSW+S+I+G  +   I  A +LF++MP+++V 
Sbjct: 173 NVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVV 232

Query: 108 SWTTMIKGFSSKGLIENSIDLFELMPDQGDDV 13
           +WT MI G+     +++   LF  M  +G +V
Sbjct: 233 TWTLMIDGYMKMNFLKDGFILFLNMRREGVEV 264



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = -3

Query: 285 NTFITMYCRLGCIDAAAKIFHVI-DKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVY 109
           N+ IT   R GCI  A  IF+ + +K+TVSW +++    +  +I+ A E+FN++P+ +V 
Sbjct: 51  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVA 110

Query: 108 SWTTMIKGFSSKGLIENSIDLFELMPDQ 25
           S+  MI  +  + +++ + +LF  MP +
Sbjct: 111 SYNAMITAYHRRNMVDEAFELFSSMPQR 138



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/93 (37%), Positives = 49/93 (52%)
 Frame = -3

Query: 282 TFITMYCRLGCIDAAAKIFHVIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVYSW 103
           T IT +   G  D A K+ H      VS N +I G  +   ++ A  +F+ M EKDV SW
Sbjct: 145 TMITGFVHAGMFDMAEKL-HREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSW 203

Query: 102 TTMIKGFSSKGLIENSIDLFELMPDQGDDVAWT 4
           ++MI G    G I  +  LF+ MPD+ + V WT
Sbjct: 204 SSMISGLCRVGKIVEARKLFDKMPDR-NVVTWT 235


>ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  143 bits (360), Expect = 2e-32
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
 Frame = -3

Query: 378 EACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHVID-KDTV 202
           EAC +   Y E  Q+H LV +MGF+FDVFLGN  I MYCR   +  A KIF +++ KD V
Sbjct: 344 EACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVV 403

Query: 201 SWNSIIAGCVQADDIDGAFELFNQMPEKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQG 22
           SWN++IAG VQ D+++  + LF +  +KDV SWTTMI GFS+KG +  SI+LF +MP Q 
Sbjct: 404 SWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ- 462

Query: 21  DDVAWTA 1
           DD+AWTA
Sbjct: 463 DDIAWTA 469



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = -3

Query: 300 DVFLGNTFITMYCRLGCIDAAAKIFHVI-DKDTVSWNSIIAGCVQADDIDGAFELFNQMP 124
           D    N  I+ Y ++G ++ A +IF  + ++D +SW+S++ G  +   I  A ELF +MP
Sbjct: 237 DPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP 296

Query: 123 EKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQG 22
           E++V +WT MI G    G  E    LF  M  +G
Sbjct: 297 ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEG 330



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
 Frame = -3

Query: 276 ITMYCRLGCIDAAAKIF---HVIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVYS 106
           IT   R G +D A +++    V  +D V  N++I+G ++   ++ A  +F  M E+DV S
Sbjct: 212 ITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVIS 271

Query: 105 WTTMIKGFSSKGLIENSIDLFELMPDQGDDVAWTA 1
           W++M+ G+  KG I ++ +LFE MP++ + V WTA
Sbjct: 272 WSSMVDGYCKKGKIGHARELFERMPER-NVVTWTA 305



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
 Frame = -3

Query: 393 IDHTVEACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHVID 214
           +   + A   L+   +  Q+H LV++MG +FD+ + N+ ++MY + G +    +IF  I+
Sbjct: 502 LSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSIN 561

Query: 213 K-DTVSWNSIIAGCVQADDIDGAFELFNQM----PEKDVYSWTTMIKGFSSKGLIENSID 49
             + VS+NS+I G  Q    + A ELF++M     + +  ++  ++   +  GL+E   +
Sbjct: 562 SPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWN 621

Query: 48  LFELM 34
            F+ M
Sbjct: 622 YFKSM 626


>emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  143 bits (360), Expect = 2e-32
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
 Frame = -3

Query: 378 EACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHVID-KDTV 202
           EAC +   Y E  Q+H LV +MGF+FDVFLGN  I MYCR   +  A KIF +++ KD V
Sbjct: 265 EACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVV 324

Query: 201 SWNSIIAGCVQADDIDGAFELFNQMPEKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQG 22
           SWN++IAG VQ D+++  + LF +  +KDV SWTTMI GFS+KG +  SI+LF +MP Q 
Sbjct: 325 SWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ- 383

Query: 21  DDVAWTA 1
           DD+AWTA
Sbjct: 384 DDIAWTA 390



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = -3

Query: 300 DVFLGNTFITMYCRLGCIDAAAKIFHVI-DKDTVSWNSIIAGCVQADDIDGAFELFNQMP 124
           D    N  I+ Y ++G ++ A +IF  + ++D +SW+S++ G  +   I  A ELF +MP
Sbjct: 158 DPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP 217

Query: 123 EKDVYSWTTMIKGFSSKGLIENSIDLFELMPDQG 22
           E++V +WT MI G    G  E    LF  M  +G
Sbjct: 218 ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEG 251



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
 Frame = -3

Query: 276 ITMYCRLGCIDAAAKIF---HVIDKDTVSWNSIIAGCVQADDIDGAFELFNQMPEKDVYS 106
           IT   R G +D A +++    V  +D V  N++I+G ++   ++ A  +F  M E+DV S
Sbjct: 133 ITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVIS 192

Query: 105 WTTMIKGFSSKGLIENSIDLFELMPDQGDDVAWTA 1
           W++M+ G+  KG I ++ +LFE MP++ + V WTA
Sbjct: 193 WSSMVDGYCKKGKIGHARELFERMPER-NVVTWTA 226



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
 Frame = -3

Query: 393 IDHTVEACGKLSRYVEAFQLHALVLQMGFDFDVFLGNTFITMYCRLGCIDAAAKIFHVID 214
           +   + A   L+   +  Q+H LV++MG +FD+ + N+ ++MY + G +    +IF  I+
Sbjct: 423 LSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSIN 482

Query: 213 K-DTVSWNSIIAGCVQADDIDGAFELFNQM----PEKDVYSWTTMIKGFSSKGLIENSID 49
             + VS+NS+I G  Q    + A ELF++M     + +  ++  ++   +  GL+E   +
Sbjct: 483 SPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWN 542

Query: 48  LFELM 34
            F+ M
Sbjct: 543 YFKSM 547