BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00039022
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containi...   185   3e-45
ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
emb|CBI30711.3| unnamed protein product [Vitis vinifera]              185   4e-45
ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|2...   182   3e-44
gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]        181   5e-44

>ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
           gi|449500809|ref|XP_004161200.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  185 bits (470), Expect = 3e-45
 Identities = 83/120 (69%), Positives = 102/120 (85%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           SLAALD+GRE+H + +RNG+S D++V NA+VDMYVKCG LVLA+SLF +IP K+LVSWT+
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMRNEC 365
           MIAGY MHG+G +AI TF +MR  GI+PD  SFISILYACSHSGLL++GW  FNIM+ EC
Sbjct: 626 MIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKEC 685



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 41/105 (39%), Positives = 62/105 (59%)
 Frame = +3

Query: 18  LDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAG 197
           L  G+ +H ++  N   ++ FV NAL DMY KCG++  A  +FS + +K+++SW  MI G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529

Query: 198 YAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKG 332
           Y  +    +A+  FAEM+R   KPD  +   IL AC+    L+KG
Sbjct: 530 YTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG 573



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVI--NALVDMYVKCGALVLAKSLFSIIPEKNLVSW 179
           ++  L  G+ LHS+ ++   + DR V   N L+DMY KCG L  A  +F  + EK +VSW
Sbjct: 364 NIGTLLLGKVLHSYSIKAA-TLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSW 422

Query: 180 TIMIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKG 332
           T MI GY   G    AI  F EM+  G+ PD  +  SIL AC+ +G L+ G
Sbjct: 423 TSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG 473



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/109 (29%), Positives = 63/109 (57%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           ++A ++ GR++H  + + GF+S   V+N+L+  Y     +  A+ LF  + +++++SW  
Sbjct: 263 AVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNS 322

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKG 332
           MI+GY  +G   + I  F +M   G+  D A+ +++  AC++ G L  G
Sbjct: 323 MISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG 371



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/102 (34%), Positives = 54/102 (52%)
 Frame = +3

Query: 27  GRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAGYAM 206
           GR + S +  +G   D  +   LV MYVKCG L   + +F  + E  +  W +MI+ Y+ 
Sbjct: 169 GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSG 228

Query: 207 HGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKG 332
            G   ++I  F +M   GIKP+S +F SIL   +    +E+G
Sbjct: 229 SGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEG 270


>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  185 bits (469), Expect = 4e-45
 Identities = 85/120 (70%), Positives = 102/120 (85%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           SLAAL+RG+E+H  ++RNGFS DR V NALVDMY+KCGAL LA+ LF +IPEK+LVSWT+
Sbjct: 464 SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTV 523

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMRNEC 365
           MIAGY MHG+G +AI  F EMR +GI+PD  SFISILYACSHSGLL++GW FFN+MRN C
Sbjct: 524 MIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNC 583



 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 44/110 (40%), Positives = 65/110 (59%)
 Frame = +3

Query: 27  GRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAGYAM 206
           GR LH + ++  F  +  + N L+DMY K G L  A  +F  + E+++VSWT MIAGYA 
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 207 HGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMR 356
            G    ++  F EM + GI PD  +  +IL+AC+ +GLLE G    N ++
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
 Frame = +3

Query: 18  LDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAG 197
           L+ G+++H+++  N   SD FV NAL+DMY KCG++  A S+FS +  K++VSW  MI G
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 198 YAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFF-NIMRN 359
           Y+ +    +A+  F EM +   KP+S +   IL AC+    LE+G     +I+RN
Sbjct: 428 YSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRN 481



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
 Frame = +3

Query: 9   LAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIM 188
           L ++  GR +HS +  N    D  + + LV MYV CG L   + +F  +  + +  W ++
Sbjct: 114 LKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLL 173

Query: 189 IAGYAMHGFGRQAIFTFAEMRRAGIK--------------PDSASFISILYACSHSGLLE 326
           + GYA  G  R+++  F  MR  GI+               D  S+ S++     +GL E
Sbjct: 174 MNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 327 KGWSFFNIM 353
           KG   F  M
Sbjct: 234 KGLDLFEQM 242


>emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  185 bits (469), Expect = 4e-45
 Identities = 85/120 (70%), Positives = 102/120 (85%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           SLAAL+RG+E+H  ++RNGFS DR V NALVDMY+KCGAL LA+ LF +IPEK+LVSWT+
Sbjct: 337 SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTV 396

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMRNEC 365
           MIAGY MHG+G +AI  F EMR +GI+PD  SFISILYACSHSGLL++GW FFN+MRN C
Sbjct: 397 MIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNC 456



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
 Frame = +3

Query: 87  NALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAGYAMHGFGRQAIFTFAEMRRAGIK 266
           N L+DMY K G L  A  +F  + E+++VSWT MIAGYA  G    ++  F EM +  + 
Sbjct: 263 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF 322

Query: 267 PDSASFISILYACSHSGLLEKGWSFF-NIMRN 359
           P+S +   IL AC+    LE+G     +I+RN
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRN 354



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
 Frame = +3

Query: 9   LAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIM 188
           L ++  GR +HS +  N    D  + + LV MYV CG L   + +F  +  + +  W ++
Sbjct: 114 LKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLL 173

Query: 189 IAGYAMHGFGRQAIFTFAEMRRAGIK--------------PDSASFISILYACSHSGLLE 326
           + GYA  G  R+++  F  MR  GI+               D  S+ S++     +GL E
Sbjct: 174 MNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 327 KGWSFFNIM 353
           KG   F  M
Sbjct: 234 KGLDLFEQM 242


>ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|222848697|gb|EEE86244.1|
           predicted protein [Populus trichocarpa]
          Length = 571

 Score =  182 bits (461), Expect = 3e-44
 Identities = 83/120 (69%), Positives = 102/120 (85%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           SLA+LDRG+E+H  ++RNGF SD+ V NALVDMYVKCG  VLA+ LF +IP K+L++WT+
Sbjct: 211 SLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTV 270

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMRNEC 365
           MIAGY MHGFG  AI TF EMR+AGI+PD  SFISILYACSHSGLL++GW FFN+M++EC
Sbjct: 271 MIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDEC 330



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
 Frame = +3

Query: 15  ALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIA 194
           +L+ G+++H+++  N   S+ FV NAL+DMY KCG++  A S+F  +P K+++SW  MI 
Sbjct: 114 SLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIG 173

Query: 195 GYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFF-NIMRN 359
           GY+ +    +A+  F +M    +KPD  +   IL AC+    L++G     +I+RN
Sbjct: 174 GYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRN 228



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/110 (37%), Positives = 60/110 (54%)
 Frame = +3

Query: 27  GRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAGYAM 206
           GR +H   V+          N L+DMY KCG L  A  +F ++  + +V+WT +IA YA 
Sbjct: 17  GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAR 76

Query: 207 HGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMR 356
            G   +AI  F EM R G+ PD  +  ++L+AC+ +G LE G    N +R
Sbjct: 77  EGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIR 126


>gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  181 bits (459), Expect = 5e-44
 Identities = 83/119 (69%), Positives = 102/119 (85%)
 Frame = +3

Query: 6   SLAALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTI 185
           SL+AL+RG+E+H +++RNG+SSDR V NALVD+YVKCG L LA+ LF +IP K+LVSWT+
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 186 MIAGYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFNIMRNE 362
           MIAGY MHG+G +AI TF EMR AGI+PD  SFISILYACSHSGLLE+GW FF IM+N+
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562



 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 43/105 (40%), Positives = 60/105 (57%)
 Frame = +3

Query: 18  LDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIAG 197
           L  G+ +HS  +++ F       N L+DMY KCG L  A  +F  + E+N+VSWT MIAG
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 198 YAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKG 332
           Y   G    AI    +M + G+K D  +  SIL+AC+ SG L+ G
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG 371



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = +3

Query: 15  ALDRGRELHSFVVRNGFSSDRFVINALVDMYVKCGALVLAKSLFSIIPEKNLVSWTIMIA 194
           +LD G+++H ++  N   S+ FV NAL+DMY KCG++  A S+FS +  K+++SW  MI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI- 425

Query: 195 GYAMHGFGRQAIFTFAEMRRAGIKPDSASFISILYACSHSGLLEKGWSFFN-IMRN 359
                                 +KPDS +   +L AC+    LE+G      I+RN
Sbjct: 426 --------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRN 461