BLASTX nr result

ID: Bupleurum21_contig00037480 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00037480
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|2...   110   2e-22
ref|XP_002318937.1| chromatin remodeling complex subunit [Populu...   108   5e-22
ref|XP_002328309.1| chromatin remodeling complex subunit [Populu...   105   4e-21
ref|XP_002330022.1| chromatin remodeling complex subunit [Populu...   100   1e-19
ref|XP_002282476.2| PREDICTED: uncharacterized protein LOC100258...   100   2e-19

>ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|223531092|gb|EEF32941.1|
            mom(plant), putative [Ricinus communis]
          Length = 1982

 Score =  110 bits (274), Expect = 2e-22
 Identities = 61/136 (44%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
 Frame = +2

Query: 110  SEKSMLPNAKKSLHLSVKPDILKLCEILKLSDEVKIMVEKFLVYVISNHEVVKSDSANIL 289
            +E+  + +++KSLHL +KPD+ KLCEILKL D VK MV+ FL YV++NH V++ + A IL
Sbjct: 882  NERINVHDSQKSLHLLLKPDMAKLCEILKLPDNVKAMVQSFLEYVMNNHHVIR-EPATIL 940

Query: 290  QAFXXXXXXXXXXXXKQKIDRKECLLLARQHLKFSCNENEADSMYSAVQKLEKAF---EE 460
            QAF            K KID KE L LA+QHL F C + EAD +YS  + L+K F     
Sbjct: 941  QAFQISLCWTAASLLKHKIDHKESLALAKQHLNFGCKKEEADYVYSKFRCLKKVFLYHTG 1000

Query: 461  NILSDLSKDGLSGVER 508
            N++   S +    V R
Sbjct: 1001 NVMLTCSSENSQSVTR 1016


>ref|XP_002318937.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857313|gb|EEE94860.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 2283

 Score =  108 bits (270), Expect = 5e-22
 Identities = 55/115 (47%), Positives = 80/115 (69%)
 Frame = +2

Query: 110  SEKSMLPNAKKSLHLSVKPDILKLCEILKLSDEVKIMVEKFLVYVISNHEVVKSDSANIL 289
            +E+  L +++KSLHL +KP+I KLCEIL+L + VK+MVE+FL YV++NH + + + A+IL
Sbjct: 1258 NERMNLHDSEKSLHLILKPEITKLCEILQLPENVKVMVERFLEYVLNNHHISR-EPASIL 1316

Query: 290  QAFXXXXXXXXXXXXKQKIDRKECLLLARQHLKFSCNENEADSMYSAVQKLEKAF 454
            QAF            K K+  KE L LA+QHL F C ++EAD +YS ++ L+KAF
Sbjct: 1317 QAFLISLCWTSASMLKHKLGHKESLALAKQHLNFGCKKDEADFVYSKLRCLKKAF 1371


>ref|XP_002328309.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222837824|gb|EEE76189.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1996

 Score =  105 bits (262), Expect = 4e-21
 Identities = 55/115 (47%), Positives = 80/115 (69%)
 Frame = +2

Query: 110  SEKSMLPNAKKSLHLSVKPDILKLCEILKLSDEVKIMVEKFLVYVISNHEVVKSDSANIL 289
            +E+  L  ++KSLHL +KP+I KL EIL+L ++VK+MV++FL YV++NH V + + A+IL
Sbjct: 916  NERMNLHYSRKSLHLVLKPEIEKLSEILQLPEDVKVMVDQFLEYVLNNHHVSR-EPASIL 974

Query: 290  QAFXXXXXXXXXXXXKQKIDRKECLLLARQHLKFSCNENEADSMYSAVQKLEKAF 454
            QAF            K K+DRKE L LA+QHL F C ++EAD +YS ++ L+K F
Sbjct: 975  QAFLISLCWTAASMIKYKLDRKESLALAKQHLNFCCTKDEADFVYSKLRYLKKVF 1029


>ref|XP_002330022.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222871447|gb|EEF08578.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1441

 Score =  100 bits (249), Expect = 1e-19
 Identities = 50/113 (44%), Positives = 76/113 (67%)
 Frame = +2

Query: 116 KSMLPNAKKSLHLSVKPDILKLCEILKLSDEVKIMVEKFLVYVISNHEVVKSDSANILQA 295
           +++  +++KSLHL +KP+I KLCEIL+L + VK+MVE+F  YV++NH V + +  ++LQ 
Sbjct: 328 RNLHDDSEKSLHLFLKPEIAKLCEILQLPENVKVMVEQFREYVLNNHHVSR-EPPSLLQG 386

Query: 296 FXXXXXXXXXXXXKQKIDRKECLLLARQHLKFSCNENEADSMYSAVQKLEKAF 454
           F            K K+D KE L LA++HL FSC ++EAD +YS ++ L K F
Sbjct: 387 FLISLCWTAASMLKHKLDHKESLALAKEHLNFSCKKDEADFVYSKLRCLRKLF 439


>ref|XP_002282476.2| PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera]
          Length = 1534

 Score =  100 bits (248), Expect = 2e-19
 Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 23/186 (12%)
 Frame = +2

Query: 8    GESRILGSNGSCCLKRP-----DVIETNPLDTAEVPLV--VSEKSM------------LP 130
            G S I  +N S  L RP     D +  N   T+  PLV  +SE S             L 
Sbjct: 621  GASGISANNESQSLSRPTACTHDALHANRASTSP-PLVSDISEASSEIHTIEFEGRRKLR 679

Query: 131  NAKKSLHLSVKPDILKLCEILKLSDEVKIMVEKFLVYVISNHEVVKSDSANILQAFXXXX 310
            +A+KSLHL ++ DI KLC+IL+LS++VK MV + L YV++NH V + + A+ILQAF    
Sbjct: 680  DAQKSLHLVLETDISKLCDILQLSEDVKGMVGRLLEYVMNNHHVNR-EPASILQAFQISL 738

Query: 311  XXXXXXXXKQKIDRKECLLLARQHLKFSCNENEADSMYSAVQKLEKAFE---ENI-LSDL 478
                      +IDRK  L+LA+QHL F+C E E + +YS +  L++ F+   EN+ ++D 
Sbjct: 739  CWTAASLMNHEIDRKGSLMLAKQHLAFTCKEEEVEYVYSKLHSLKEKFQYRSENLRVADF 798

Query: 479  SKDGLS 496
             +D +S
Sbjct: 799  EQDLMS 804


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