BLASTX nr result
ID: Bupleurum21_contig00037399
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00037399
(425 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002517972.1| pentatricopeptide repeat-containing protein,... 170 1e-40
ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containi... 164 9e-39
ref|XP_002319916.1| predicted protein [Populus trichocarpa] gi|2... 156 1e-36
ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containi... 156 2e-36
emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera] 156 2e-36
>ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542954|gb|EEF44490.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 483
Score = 170 bits (431), Expect = 1e-40
Identities = 85/140 (60%), Positives = 103/140 (73%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD +LEPD IC TSVISA+TR+D+Y +ALGFFYL QRK D +TFG+VLTACGNL R
Sbjct: 211 FDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRR 270
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
LKQGKE+HAK I VDMYGKCGLV S+ VFDRM+ KN+V+ S+LL
Sbjct: 271 LKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGG 330
Query: 64 YCQKGDFDTVIELFREIGRA 5
+CQ GDF++VI +FRE+G A
Sbjct: 331 FCQNGDFESVIRIFREMGEA 350
Score = 69.3 bits (168), Expect = 3e-10
Identities = 36/137 (26%), Positives = 70/137 (51%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD M + + ++++ F ++ ++ + F R+ D Y+FG+VL AC L
Sbjct: 313 FDRMSVKNSVSWSALLGGFCQNGDFESVIRIF----REMGEADDLYSFGTVLRACAGLAA 368
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
++QGKE+H + + VD+Y KCG + + +F +MT +N +T +S++
Sbjct: 369 VRQGKEVHCQYVRRGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNSMICG 428
Query: 64 YCQKGDFDTVIELFREI 14
+ Q G + + +F E+
Sbjct: 429 FAQNGWAEEALRIFDEM 445
Score = 58.2 bits (139), Expect = 7e-07
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FDG+ D I TS+I+ + + + K+AL F+ D + +T +V+ AC +LG
Sbjct: 110 FDGLYFRDVISWTSMITGYVKGEKPKKALDLFW-EMLDVGVDPNAFTLSAVIKACTDLGT 168
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
L GK H + +D+YG+ + ++R +FD + + + + +S+++A
Sbjct: 169 LMLGKCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISA 228
Query: 64 YCQKGDFDTVIELF----REIGRA 5
Y + +D + F R++G A
Sbjct: 229 YTRNDMYDKALGFFYLMQRKLGLA 252
>ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 164 bits (414), Expect = 9e-39
Identities = 79/137 (57%), Positives = 99/137 (72%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD +LEPD +C T+VISAFTR+DLY+EALGFFYL R ++ D YTFGSVLTACGNLGR
Sbjct: 220 FDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGR 279
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
L+QG+EIHAK I VDMYGKCG V S+ +FDRM+ +N+V+ S+LL
Sbjct: 280 LRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAV 339
Query: 64 YCQKGDFDTVIELFREI 14
YC GD++ + LFRE+
Sbjct: 340 YCHNGDYEKAVNLFREM 356
Score = 74.7 bits (182), Expect = 7e-12
Identities = 38/134 (28%), Positives = 70/134 (52%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD M + + +++++ + + Y++A+ F + ++D Y+FG+V+ AC L
Sbjct: 322 FDRMSNRNSVSWSALLAVYCHNGDYEKAVNLF-----REMKEVDLYSFGTVIRACAGLAA 376
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
+ GKEIH + I VD+Y KCG + + VFDRM +N +T +S+++
Sbjct: 377 VTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHG 436
Query: 64 YCQKGDFDTVIELF 23
+ Q G I++F
Sbjct: 437 FAQNGSSGIAIQIF 450
>ref|XP_002319916.1| predicted protein [Populus trichocarpa] gi|222858292|gb|EEE95839.1|
predicted protein [Populus trichocarpa]
Length = 606
Score = 156 bits (395), Expect = 1e-36
Identities = 77/131 (58%), Positives = 94/131 (71%)
Frame = -2
Query: 409 EPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGRLKQGK 230
+PD IC TS+ISAFTR+D+Y +ALGFFY RK+ D +TFG+VLTACGNLGRLKQGK
Sbjct: 225 QPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGK 284
Query: 229 EIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNAYCQKG 50
E+HAK I VDMYGKC LV S+ VFDRM+ KN V+ ++LL YCQ G
Sbjct: 285 EVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNG 344
Query: 49 DFDTVIELFRE 17
DF++VI +FRE
Sbjct: 345 DFESVIRIFRE 355
Score = 70.5 bits (171), Expect = 1e-10
Identities = 37/137 (27%), Positives = 71/137 (51%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD M + + T+++ + ++ ++ + F ++ +D Y+FG+VL AC L
Sbjct: 322 FDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKK-----VDTYSFGTVLRACAGLAA 376
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
++QGKE+H + + VD+Y KCG + + +F RM+ +N +T +S++
Sbjct: 377 VRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYG 436
Query: 64 YCQKGDFDTVIELFREI 14
+ Q G V +LF E+
Sbjct: 437 FAQNGRGGEVFQLFDEM 453
Score = 57.4 bits (137), Expect = 1e-06
Identities = 35/139 (25%), Positives = 67/139 (48%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FDG+ D I TS+I+ + + + K++L F L + + +T +V+ AC LG
Sbjct: 119 FDGLFYKDLISWTSMITGYVKVEKPKKSLELF-LEMLGLGIEPNGFTLSAVIKACSGLGD 177
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
L+ GK H + +DMYG+ V ++ LVF + + + + +S+++A
Sbjct: 178 LRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISA 237
Query: 64 YCQKGDFDTVIELFREIGR 8
+ + +D + F + R
Sbjct: 238 FTRNDVYDKALGFFYSMCR 256
>ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 156 bits (394), Expect = 2e-36
Identities = 78/137 (56%), Positives = 96/137 (70%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD +LEPD IC TS+ISA TR+D + EAL FFY QR + D +TFG+VLTACGNLGR
Sbjct: 219 FDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGR 278
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
LKQGKE+HAK I VDMYGKCG V S+ +FDRM KN+V+ S+LL
Sbjct: 279 LKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGG 338
Query: 64 YCQKGDFDTVIELFREI 14
YCQ GDF +VI++FR++
Sbjct: 339 YCQNGDFKSVIQIFRKM 355
Score = 70.9 bits (172), Expect = 1e-10
Identities = 33/137 (24%), Positives = 70/137 (51%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD M + + ++++ + ++ +K + F ++ +D Y FG++L C L
Sbjct: 321 FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK-----VDLYCFGTILRTCAGLAA 375
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
++QGKE+H + I VD+Y KCG + ++ +FD+M +N +T +S++
Sbjct: 376 VRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGG 435
Query: 64 YCQKGDFDTVIELFREI 14
+ Q G + + +F ++
Sbjct: 436 FAQNGRGEEALRIFNQM 452
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/139 (25%), Positives = 65/139 (46%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FDG+ D I TS+IS + R +L F+ Y + + +T +V+ AC LG
Sbjct: 118 FDGLFVKDVISWTSMISGYVRVGKPMNSLELFW-KMLAYGVEPNAFTLSAVIKACSELGD 176
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
LK G+ H + +DM+G+ + ++R +FD + + + + +S+++A
Sbjct: 177 LKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISA 236
Query: 64 YCQKGDFDTVIELFREIGR 8
+ FD + F + R
Sbjct: 237 LTRNDFFDEALRFFYSMQR 255
>emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 156 bits (394), Expect = 2e-36
Identities = 78/137 (56%), Positives = 96/137 (70%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD +LEPD IC TS+ISA TR+D + EAL FFY QR + D +TFG+VLTACGNLGR
Sbjct: 278 FDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGR 337
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
LKQGKE+HAK I VDMYGKCG V S+ +FDRM KN+V+ S+LL
Sbjct: 338 LKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGG 397
Query: 64 YCQKGDFDTVIELFREI 14
YCQ GDF +VI++FR++
Sbjct: 398 YCQNGDFKSVIQIFRKM 414
Score = 70.9 bits (172), Expect = 1e-10
Identities = 33/137 (24%), Positives = 70/137 (51%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FD M + + ++++ + ++ +K + F ++ +D Y FG++L C L
Sbjct: 380 FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK-----VDLYCFGTILRTCAGLAA 434
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
++QGKE+H + I VD+Y KCG + ++ +FD+M +N +T +S++
Sbjct: 435 VRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGG 494
Query: 64 YCQKGDFDTVIELFREI 14
+ Q G + + +F ++
Sbjct: 495 FAQNGRGEEALRIFNQM 511
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/139 (25%), Positives = 65/139 (46%)
Frame = -2
Query: 424 FDGMLEPDKICCTSVISAFTRSDLYKEALGFFYLTQRKYQFDLDEYTFGSVLTACGNLGR 245
FDG+ D I TS+IS + R +L F+ Y + + +T +V+ AC LG
Sbjct: 177 FDGLFVKDVISWTSMISGYVRVGKPMNSLELFW-KMLAYGVEPNAFTLSAVIKACSELGD 235
Query: 244 LKQGKEIHAKAIXXXXXXXXXXXXXXVDMYGKCGLVTNSRLVFDRMTKKNTVTLSSLLNA 65
LK G+ H + +DM+G+ + ++R +FD + + + + +S+++A
Sbjct: 236 LKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISA 295
Query: 64 YCQKGDFDTVIELFREIGR 8
+ FD + F + R
Sbjct: 296 LTRNDFFDEALRFFYSMQR 314