BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036993
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17585.3| unnamed protein product [Vitis vinifera]              104   8e-21
ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   104   8e-21
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...    81   1e-13
ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi...    73   2e-11
ref|XP_003611888.1| Pentatricopeptide repeat-containing protein ...    73   3e-11

>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  104 bits (259), Expect = 8e-21
 Identities = 50/89 (56%), Positives = 68/89 (76%)
 Frame = -3

Query: 269 VHISRIFHRQVLFDTFTIQSRYFSRNPSINQVSLYLQRAKLIDSIRLTMRSNSPESLVST 90
           +++ ++F +  LF+    Q+RYF+ NP   ++SLYL RA+LIDSIRL +RSN+P SL+  
Sbjct: 1   MYVKQLFRKLCLFNNPMQQTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPL 60

Query: 89  LNDPALDSFVVTNALHSAPSPESALVLVE 3
           LNDP +DSFVV NAL SAPSP+SAL L+E
Sbjct: 61  LNDPTVDSFVVANALQSAPSPDSALSLLE 89


>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  104 bits (259), Expect = 8e-21
 Identities = 50/89 (56%), Positives = 68/89 (76%)
 Frame = -3

Query: 269 VHISRIFHRQVLFDTFTIQSRYFSRNPSINQVSLYLQRAKLIDSIRLTMRSNSPESLVST 90
           +++ ++F +  LF+    Q+RYF+ NP   ++SLYL RA+LIDSIRL +RSN+P SL+  
Sbjct: 1   MYVKQLFRKLCLFNNPMQQTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPL 60

Query: 89  LNDPALDSFVVTNALHSAPSPESALVLVE 3
           LNDP +DSFVV NAL SAPSP+SAL L+E
Sbjct: 61  LNDPTVDSFVVANALQSAPSPDSALSLLE 89


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 44/89 (49%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
 Frame = -3

Query: 266 HISRIFHRQVLFDTFTIQSRYFSRNPSINQVSLYLQRAKLIDSIRLTMRSNSPESLVSTL 87
           H SR  ++   F+  T Q R+F R+P  N+++ YL+RA+LIDSIRL +RSNSP S+ + L
Sbjct: 5   HFSRTINK---FNILTQQIRFFVRDPFPNKLTHYLRRAELIDSIRLALRSNSPNSITTFL 61

Query: 86  NDP-ALDSFVVTNALHSAPSPESALVLVE 3
           N+   LD FV+T+ + SAPS +SAL L+E
Sbjct: 62  NNTRILDPFVITHTIRSAPSADSALFLIE 90


>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
 Frame = -3

Query: 269 VHISRIFHRQVLFDTFT--IQSRYFSRN--PSINQVSLYLQRAKLIDSIRLTMRSNSPE- 105
           +H+   F    L +  T  +Q+R ++R   P   +VS YL RAKLIDSIRLT+RSN+P  
Sbjct: 3   MHLRPFFREANLLNGLTSRVQARSYARRREPFPTKVSHYLHRAKLIDSIRLTLRSNTPNP 62

Query: 104 SLVSTLNDPALDSFVVTNALHSAPSPESALVLV 6
           SL S +N   +DSFV T+AL SAPS +SAL  V
Sbjct: 63  SLPSLINHRLMDSFVATHALRSAPSADSALSFV 95


>ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513223|gb|AES94846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 659

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
 Frame = -3

Query: 224 FTIQSRYFSR--NPSINQVSLYLQRAKLIDSIRLTMRSNSPESLVSTL-NDPALDSFVVT 54
           F IQ R+++R  +P   +++ YL RAKLIDSIRL++RSN+P S +STL N    DSFV+T
Sbjct: 17  FRIQIRFYTRRRDPFPTKITHYLNRAKLIDSIRLSLRSNNPNSTLSTLINHRLFDSFVLT 76

Query: 53  NALHSAPSPESALVLV 6
           +AL SAP  +SAL L+
Sbjct: 77  HALRSAPCADSALSLI 92