BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036819
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]   142   3e-32
ref|XP_002513372.1| pentatricopeptide repeat-containing protein,...   138   4e-31
ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|2...   134   6e-30
ref|NP_188709.1| pentatricopeptide repeat-containing protein [Ar...   103   1e-20

>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  142 bits (358), Expect = 3e-32
 Identities = 65/98 (66%), Positives = 82/98 (83%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           LRACTS+ CL++G Q+ G IQK RFV+N+FV+SALVD HSKCGKMEDA ++F  M+ERD+
Sbjct: 138 LRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDV 197

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFSL 1
           VSWNAMIGGY VQGF +D+F MFR +LR G+ PD ++L
Sbjct: 198 VSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 235



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/94 (31%), Positives = 56/94 (59%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L  C ++    +G QIH    K +   +V + +AL+DM++K G++EDA   FD M E+++
Sbjct: 341 LNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNV 400

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPD 13
           +SW ++I GY   G+ + A  +++ +  +G  P+
Sbjct: 401 ISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPN 434



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/90 (37%), Positives = 53/90 (58%)
 Frame = -3

Query: 294  LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
            L  C+S+  L+ G+ IHG + K     NV + + L+ ++S+ G+ EDA  VF  M ERDL
Sbjct: 1055 LSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDL 1114

Query: 114  VSWNAMIGGYVVQGFKNDAFQMFRLILREG 25
            +SWN+M+  YV  G   D  ++   +L+ G
Sbjct: 1115 ISWNSMMACYVQDGKCLDGLKILAELLQMG 1144



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/94 (32%), Positives = 50/94 (53%)
 Frame = -3

Query: 294  LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
            L A  ++  LE G+Q+HG + K  F  ++ V +A +DM+ KCG+M D   +    + R  
Sbjct: 1359 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSR 1418

Query: 114  VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPD 13
            +SWN +I  +   G    A + F  +L+ G  PD
Sbjct: 1419 LSWNILISAFARHGCFQKARETFHEMLKLGPKPD 1452



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/91 (37%), Positives = 52/91 (57%)
 Frame = -3

Query: 294  LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
            L AC++  CL   K +H  I  + F D + V +ALV M+ K G M +A  V   M + D 
Sbjct: 1156 LAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR 1215

Query: 114  VSWNAMIGGYVVQGFKNDAFQMFRLILREGM 22
            V+WNA+IGG+      N+A + ++LI  +G+
Sbjct: 1216 VTWNALIGGHAENEEPNEAVKAYKLIREKGI 1246



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = -3

Query: 261  VGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDLVSWNAMIGGYV 82
            +G Q+ G I +  F D+V V ++L+ M S    +E+AC+VFD M E D++SWNAMI  Y 
Sbjct: 965  LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 1024

Query: 81   VQGFKNDAFQMF 46
              G   ++ + F
Sbjct: 1025 HHGLCRESLRCF 1036


>emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  142 bits (358), Expect = 3e-32
 Identities = 65/98 (66%), Positives = 82/98 (83%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           LRACTS+ CL++G Q+ G IQK RFV+N+FV+SALVD HSKCGKMEDA ++F  M+ERD+
Sbjct: 259 LRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDV 318

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFSL 1
           VSWNAMIGGY VQGF +D+F MFR +LR G+ PD ++L
Sbjct: 319 VSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 356



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/94 (31%), Positives = 56/94 (59%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L  C ++    +G QIH    K +   +V + +AL+DM++K G++EDA   FD M E+++
Sbjct: 462 LNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNV 521

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPD 13
           +SW ++I GY   G+ + A  +++ +  +G  P+
Sbjct: 522 ISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPN 555


>ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547280|gb|EEF48775.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 597

 Score =  138 bits (348), Expect = 4e-31
 Identities = 63/98 (64%), Positives = 80/98 (81%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           LRACT + CLE G QIHG IQK+RF+ N+FVQSALVD+HSKCG MEDA ++F+ M ERD+
Sbjct: 145 LRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDV 204

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFSL 1
           VSWNA+IGGY  Q F +D+F+MF  ++ EG+TPD F+L
Sbjct: 205 VSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTL 242



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/97 (34%), Positives = 58/97 (59%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L  C  I  L +G+QIH    K +   +V   +ALVDM++K G++EDA   F  M E+++
Sbjct: 348 LNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNV 407

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
           +SW ++I GY   G+ ++A  +++ +  EG+ P+  +
Sbjct: 408 ISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDIT 444



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/97 (34%), Positives = 51/97 (52%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L+ C     L+ G  IH  I ++ F  N+ + + L+  + K G+  +A  VFD M ER++
Sbjct: 44  LQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNV 103

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
           VSW A I GY   G   DA  +F  + R G+  + F+
Sbjct: 104 VSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFT 140


>ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|222853575|gb|EEE91122.1|
           predicted protein [Populus trichocarpa]
          Length = 551

 Score =  134 bits (338), Expect = 6e-30
 Identities = 60/97 (61%), Positives = 79/97 (81%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           LRACT + CL+ G QI G ++KSRF  N+ VQSAL+D+HSKCGKMEDA ++F +M ERD+
Sbjct: 105 LRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDV 164

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
           VSWNA+IG Y VQGF  D+F+MFR +++EGM+PD F+
Sbjct: 165 VSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFT 201



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 59/94 (62%)
 Frame = -3

Query: 285 CTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDLVSW 106
           C +I  L VG+QIH    K +   +V + +AL+DM++K G+++DA   F+ M E++++SW
Sbjct: 311 CANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISW 370

Query: 105 NAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
            ++I GY   G  ++A  +F+ +  EG+ P+  +
Sbjct: 371 TSLITGYGSHGHGHEAIALFKKMEYEGLKPNDIT 404



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/97 (35%), Positives = 48/97 (49%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L+ C      + G  IH  I  + F  N+ + + L+  +SK G    A  VFD M ER +
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
           VSW+A I GY   G   DA  +F  +LR G   + F+
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFT 100


>ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis
           thaliana] gi|332642896|gb|AEE76417.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 564

 Score =  103 bits (257), Expect = 1e-20
 Identities = 47/97 (48%), Positives = 67/97 (69%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHGSIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERDL 115
           L++C  + CL+ G QIHGS++K     N+ V+SAL+ ++++CGKME+A   FD M ERDL
Sbjct: 120 LKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDL 179

Query: 114 VSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPDSFS 4
           VSWNAMI GY      + +F +F+L+L EG  PD F+
Sbjct: 180 VSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFT 216



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -3

Query: 294 LRACTSIVCLEVGKQIHG-SIQKSRFVDNVFVQSALVDMHSKCGKMEDACHVFDVMVERD 118
           L+ CT+I  + +G+QIHG +++ S+   +V + ++L+DM++K G++EDA   F+ M E+D
Sbjct: 323 LKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKD 382

Query: 117 LVSWNAMIGGYVVQGFKNDAFQMFRLILREGMTPD 13
           + SW ++I GY   G    A  ++  +  E + P+
Sbjct: 383 VRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPN 417