BLASTX nr result
ID: Bupleurum21_contig00036728
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00036728
(334 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 169 2e-40
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 169 2e-40
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 168 4e-40
ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 165 3e-39
ref|XP_002318942.1| predicted protein [Populus trichocarpa] gi|2... 146 1e-33
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 169 bits (429), Expect = 2e-40
Identities = 80/111 (72%), Positives = 93/111 (83%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RK FDY+QEPDIVLWT MIGGY+QNGENE AL LY +M +EG++PNELTMA VLKACS+L
Sbjct: 365 RKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSL 424
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ EQGKQIH T+K G GLE+PIGSAL TMYAKCG LKDG L+F+R+ R
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR 475
Score = 84.3 bits (207), Expect = 9e-15
Identities = 40/107 (37%), Positives = 66/107 (61%)
Frame = -2
Query: 330 KVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNLS 151
+ F+ + + + W+ MI GY Q+G+++ AL+L+ M + G+ P+E T V+ ACS+L
Sbjct: 265 QTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324
Query: 150 GYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRL 10
+GKQ+H + +KLG +I + +AL+ MYAKC S+ D F L
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371
Score = 69.3 bits (168), Expect = 3e-10
Identities = 44/106 (41%), Positives = 54/106 (50%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RKVFD + E + V W MI GY AL L+ M E NE VL A +
Sbjct: 163 RKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLP 222
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFK 16
GKQIH +K GL + +G+AL+TMYAKCGSL D F+
Sbjct: 223 ELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFE 268
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = -2
Query: 327 VFDYIQEPDIVLWTFMIGGYIQNGENECA--LELYCKMLIEGVVPNELTMARVLKACSNL 154
VF+ IQ D+V W +I GY Q+G + + +EL+ +M E PN T A V A S L
Sbjct: 62 VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL 121
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
G+ H IK+ ++ +GS+L+ MY K G + +F + R
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPER 172
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 169 bits (429), Expect = 2e-40
Identities = 80/111 (72%), Positives = 93/111 (83%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RK FDY+QEPDIVLWT MIGGY+QNGENE AL LY +M +EG++PNELTMA VLKACS+L
Sbjct: 365 RKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSL 424
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ EQGKQIH T+K G GLE+PIGSAL TMYAKCG LKDG L+F+R+ R
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR 475
Score = 81.3 bits (199), Expect = 8e-14
Identities = 39/107 (36%), Positives = 65/107 (60%)
Frame = -2
Query: 330 KVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNLS 151
+ F+ + + + W+ MI G Q+G+++ AL+L+ M + G+ P+E T V+ ACS+L
Sbjct: 265 QTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324
Query: 150 GYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRL 10
+GKQ+H + +KLG +I + +AL+ MYAKC S+ D F L
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371
Score = 69.3 bits (168), Expect = 3e-10
Identities = 44/106 (41%), Positives = 54/106 (50%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RKVFD + E + V W MI GY AL L+ M E NE VL A +
Sbjct: 163 RKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLP 222
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFK 16
GKQIH +K GL + +G+AL+TMYAKCGSL D F+
Sbjct: 223 ELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFE 268
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = -2
Query: 327 VFDYIQEPDIVLWTFMIGGYIQNGENECA--LELYCKMLIEGVVPNELTMARVLKACSNL 154
VF+ IQ D+V W +I GY Q+G + + +EL+ +M E PN T A V A S L
Sbjct: 62 VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL 121
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
G+ H IK+ ++ +GS+L+ MY K G + +F + R
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPER 172
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 168 bits (426), Expect = 4e-40
Identities = 75/111 (67%), Positives = 96/111 (86%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RK F+Y+Q+PD+VLWT MI GY+QNGENE AL LYC+M +EG++PNELTMA VLKACSNL
Sbjct: 368 RKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNL 427
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ ++QG+QIH TIK GLGLE+ IGSAL TMYAKCG+L++GN++F+R+ R
Sbjct: 428 AAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPER 478
Score = 84.0 bits (206), Expect = 1e-14
Identities = 41/107 (38%), Positives = 66/107 (61%)
Frame = -2
Query: 330 KVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNLS 151
+VF+ + + + W+ MI GY Q+G++ AL+L+ +M G+ P+E T+ VL ACS+
Sbjct: 268 QVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDAC 327
Query: 150 GYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRL 10
E+GKQ+H + +KLG ++ I +AL+ MYAK G +D F L
Sbjct: 328 AVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYL 374
Score = 75.5 bits (184), Expect = 4e-12
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = -2
Query: 327 VFDYIQEPDIVLWTFMIGGYIQNGE--NECALELYCKMLIEGVVPNELTMARVLKACSNL 154
VFD I D++ W +I GY Q G + +EL+ +M + ++PN T + + A SNL
Sbjct: 65 VFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNL 124
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
S G+Q H IK+ ++ +GS+LL MY K G L + +F R+ R
Sbjct: 125 SSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPER 175
Score = 67.4 bits (163), Expect = 1e-09
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGY-IQNGENECALELYCKMLIEGVVPNELTMARVLKACSN 157
R+VFD + E + V W MI GY IQ E A E++ M E NE VL A +
Sbjct: 166 REVFDRMPERNEVTWATMISGYAIQRLAGE-AFEVFELMRREEEDVNEFAFTSVLSALAV 224
Query: 156 LSGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ GKQIH +K GL + + I +AL+TMYAKCGSL D +F+ +++
Sbjct: 225 PEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDK 276
>ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 165 bits (418), Expect = 3e-39
Identities = 77/111 (69%), Positives = 93/111 (83%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RK FDY++EPDIVLWT MI GY QNGENE AL LYC+M +E ++P+ELTMA VL+ACS+L
Sbjct: 370 RKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSL 429
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ EQGKQIH TIK G LE+PIGSAL TMYAKCGSL+DGNL+F+R+ +R
Sbjct: 430 AALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR 480
Score = 85.9 bits (211), Expect = 3e-15
Identities = 44/107 (41%), Positives = 63/107 (58%)
Frame = -2
Query: 330 KVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNLS 151
K F+ + D + W+ MI GY Q G++ AL L+ M + G P+E T V+ ACS++
Sbjct: 270 KTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIG 329
Query: 150 GYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRL 10
E+GKQIH +++K G +I +AL+ MYAKCGSL D F L
Sbjct: 330 ALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYL 376
Score = 61.2 bits (147), Expect = 8e-08
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = -2
Query: 327 VFDYIQEPDIVLWTFMIGGYIQNGE--NECALELYCKMLIEGVVPNELTMARVLKACSNL 154
VF+ I D+V W +I GY Q G +EL+ +M E +PN T + V A S+
Sbjct: 67 VFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSS 126
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
G Q H IK ++ +GS+L+ MY K G + D +F + R
Sbjct: 127 PETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPER 177
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/106 (37%), Positives = 51/106 (48%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RKVFD I E + V W +I GY A EL+ M E ++ VL A +
Sbjct: 168 RKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVP 227
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFK 16
GKQIH +K GL +G+AL+TMY KCG L D F+
Sbjct: 228 DLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFE 273
>ref|XP_002318942.1| predicted protein [Populus trichocarpa] gi|222857318|gb|EEE94865.1|
predicted protein [Populus trichocarpa]
Length = 707
Score = 146 bits (369), Expect = 1e-33
Identities = 71/111 (63%), Positives = 88/111 (79%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNL 154
RK FD++ EPD+VLWT +I GY+QNG+NE AL +Y +M + ++PNELTMA VLKACSNL
Sbjct: 369 RKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNL 428
Query: 153 SGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFKRLHNR 1
+ EQGKQIH TIK GLG E+ I SAL TMYAKCGSL++G LIF+R+ R
Sbjct: 429 AALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQR 479
Score = 79.7 bits (195), Expect = 2e-13
Identities = 39/98 (39%), Positives = 61/98 (62%)
Frame = -2
Query: 327 VFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKMLIEGVVPNELTMARVLKACSNLSG 148
+F+ + + + W+ +I GY Q G++ AL+L+ KM G VP+E T+ VLKACS+++
Sbjct: 270 LFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAA 329
Query: 147 YEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKD 34
E+GKQ H + +K G +I +AL+ MYAK G D
Sbjct: 330 IEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGD 367
Score = 64.3 bits (155), Expect = 1e-08
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = -2
Query: 333 RKVFDYIQEPDIVLWTFMIGGYIQNGENECALELYCKM-LIEGVVPNELTMARVLKACSN 157
RK+FD + E ++V WT MI GY + AL ++ M L+EG + NE VL A
Sbjct: 167 RKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNL-NEFVFTSVLSALVC 225
Query: 156 LSGYEQGKQIHVHTIKLGLGLEIPIGSALLTMYAKCGSLKDGNLIFK 16
+ GKQ+H +K G+ + + +AL+TMYAKCG+L ++F+
Sbjct: 226 PEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFE 272