BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036647
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    96   2e-18
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    94   9e-18
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    88   8e-16
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    86   2e-15
gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japo...    86   3e-15

>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
 Frame = -3

Query: 407  WKRLWQLPVPHKIRVFLWRLCRNTIPVRYRLRGKGVPITISCPMCTGEVEHLRHLFFECK 228
            W  LW L VP K++ FLWR CRN +P R RL+ +GV  T +C +C  E E   HLFF C 
Sbjct: 1417 WVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCT 1476

Query: 227  FAKDCWRLVGLDFESQNMEYVS-DWLVTFLASEPLKDL-----VTMSAILWGIWYARNKR 66
             ++ CW+ +GL  + Q    ++  + VT    E L++L     V  + ++W IW  RN  
Sbjct: 1477 KSRQCWQQLGLWSKVQQKAQLNLSFGVTMF--EILQELDSSQRVIWACVMWSIWKQRNDC 1534

Query: 65   IFDDQVVPPAVVR 27
            I+ ++V+  A VR
Sbjct: 1535 IWRNEVMTTAAVR 1547


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 43/126 (34%), Positives = 67/126 (53%)
 Frame = -3

Query: 407 WKRLWQLPVPHKIRVFLWRLCRNTIPVRYRLRGKGVPITISCPMCTGEVEHLRHLFFECK 228
           WK +W+LP+P ++R F+W+L RN IP R  LR +GV +   CP+C    E   H F  C 
Sbjct: 260 WKLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACP 319

Query: 227 FAKDCWRLVGLDFESQNMEYVSDWLVTFLASEPLKDLVTMSAILWGIWYARNKRIFDDQV 48
                W    L F+      ++ WL+++L+++    +      LW IW+ RN+ IF+  V
Sbjct: 320 MTLQVWFASPLGFQPPPQTDLNAWLLSWLSAKEPLAVQLFCVCLWKIWFFRNQVIFNQVV 379

Query: 47  VPPAVV 30
             P +V
Sbjct: 380 FEPRMV 385


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
           At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/135 (31%), Positives = 62/135 (45%)
 Frame = -3

Query: 407 WKRLWQLPVPHKIRVFLWRLCRNTIPVRYRLRGKGVPITISCPMCTGEVEHLRHLFFECK 228
           W +LW++  P KI  F WR  RN +P R+ L  + V   + CP+C  E+E   H   EC 
Sbjct: 508 WAQLWKVTAPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECV 567

Query: 227 FAKDCWRLVGLDFESQNMEYVSDWLVTFLASEPLKDLVTMSAILWGIWYARNKRIFDDQV 48
            A+D W   GL     N     DWL T  A           A+ WG+W+ RN  +++ ++
Sbjct: 568 AARDVWDESGLAMLQGNFGSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRI 627

Query: 47  VPPAVVRTWCLKQVE 3
                V   C   +E
Sbjct: 628 WHSQQVVNGCFTMLE 642


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
 Frame = -3

Query: 419 NSMGWKRLWQLPVPHKIRVFLWRLCRNTIPVRYRLRGKGVPITISCPMCTGEVEHLRHLF 240
           N+  W  +W L +PH++R FLWRL  N +P R  L  +G+    SC M     E   HLF
Sbjct: 111 NNSSWMNIWNLNIPHRVRAFLWRLAHNCLPTRVNLNARGIQCEESCVMFENFAECHTHLF 170

Query: 239 FECKFAKDCWRLVGLDFESQNMEYVSDWLVT----FLASEPLKDLVTMSAILWGIWYARN 72
           F C  A DCW+ +GL      +  +++   T    F+     +       +LW +W +RN
Sbjct: 171 FVCAKAMDCWKNIGLHVVLSELLPLANNFTTLLFDFMHRLCSQQQQAAGMLLWSLWKSRN 230

Query: 71  KRIFDDQVVPPAV 33
            +++D      A+
Sbjct: 231 IKLWDSTDTTTAI 243


>gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japonica Group]
          Length = 613

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
 Frame = -3

Query: 422 SNSMGWKRLWQLPVPHKIRVFLWRLCRNTIPVRYRLRGKGVPITISCPMCTGEVEHLRHL 243
           S ++ W++LW+L    K++ FLWRL  N++P+R  +  +G+ I   CP+C    E+  H 
Sbjct: 286 SAALQWEKLWRLNHLPKVKHFLWRLAHNSLPLRQNISKRGMEIDTRCPVCLRLDENGGHC 345

Query: 242 FFECKFAKDCWRLVGLDFESQNMEYVSDWLVTFLASEPLKD--LVTMSAILWGIWYARNK 69
           FF+CKF K CWR++  +   Q +   +  L        L++  ++T   +LW  W ARNK
Sbjct: 346 FFKCKFVKPCWRMLNFEHIRQELSLQTSTLDVCKHILNLREDIMLTTVILLWNWWDARNK 405