BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036469
         (612 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   105   5e-21
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...   102   4e-20
gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thali...   102   5e-20
gb|ABK28152.1| unknown [Arabidopsis thaliana]                         102   5e-20
ref|XP_002299084.1| predicted protein [Populus trichocarpa] gi|2...   100   3e-19

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  105 bits (263), Expect = 5e-21
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
 Frame = +3

Query: 126  KLIWDTIRTHVPSPSWINIVWNSCSIPRCSFILWLLFHGRLSTKDRLRRFGLDVSPTCLL 305
            K+ W+ +RTH P  +W   VW   S P+ SF+LWL    RLST DR++ +      TC L
Sbjct: 1339 KVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTL 1398

Query: 306  CNNENESLAHLFFSCDYSARVIAG-----NDWNVSDDWR---DLIPRNNSMRSQLCYLF- 458
            CNN  E+  HLFFSC Y++ V           N S DW     L+  +N  R  L +LF 
Sbjct: 1399 CNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRDHL-FLFR 1457

Query: 459  --IGCAVYNIWKERNDRLFGNTKNPSGSVAYRAKQMMRDRLSQI 584
                 ++Y+IW+ERN R  G   +P+  +     + +R+R+S I
Sbjct: 1458 YVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRISSI 1501


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score =  102 bits (255), Expect = 4e-20
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
 Frame = +3

Query: 135 WDTIRTHVPSPSWINIVWNSCSIPRCSFILWLLFHGRLSTKDRLRRFGLDVSPTCLLCNN 314
           W+ IR H P+  W  +VW    IPR S I W+ F  RL T+DRLR +G+++  + +LC+N
Sbjct: 115 WEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSN 174

Query: 315 ENESLAHLFFSCDYSARVIAGNDWN---------------VSDDWRDLIPRNNSMRSQLC 449
            +E+ AHLFF C +S  +     W                 +  W   +P   S  + + 
Sbjct: 175 GDETHAHLFFECSFSLAI-----WEFFASKFRPSPPFGLPAASSWILQLPL-RSHSTTIL 228

Query: 450 YLFIGCAVYNIWKERNDRLFGNTKNPSGSVAYRAKQMMRDRLSQIPKA 593
            L +  AVY++WKERN R+F +  + + S+     + MR+RL   P A
Sbjct: 229 KLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNRLLSFPSA 276


>gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thaliana]
          Length = 195

 Score =  102 bits (254), Expect = 5e-20
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
 Frame = +3

Query: 126 KLIWDTIRTHVPSPSWINIVWNSCSIPRCSFILWLLFHGRLSTKDRLRRFGLDVSPTCLL 305
           K+ W+ I  H P  +W   VW   S P+ SF+LWL    RLST D ++ +      TC L
Sbjct: 6   KVTWNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNSGQQVTCTL 65

Query: 306 CNNENESLAHLFFSCDYSARV-------IAGNDWNVSDDWRDLIPR--NNSMRSQLCYLF 458
           C N  E+   LFFSC Y++ V       +  ND+  S DW  L+P   N +M + L +LF
Sbjct: 66  CGNAEETRNLLFFSCHYTSEVWRTLTQRLLSNDY--SRDWNRLLPLLCNTNMPTDLLFLF 123

Query: 459 ---IGCAVYNIWKERNDRLFGNTKNPSGSVAYRAKQMMRDRLSQI 584
                 +VY+IW+ERN R  G   +P   +     + +R+R++ I
Sbjct: 124 RYVFQASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRINSI 168


>gb|ABK28152.1| unknown [Arabidopsis thaliana]
          Length = 196

 Score =  102 bits (254), Expect = 5e-20
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
 Frame = +3

Query: 126 KLIWDTIRTHVPSPSWINIVWNSCSIPRCSFILWLLFHGRLSTKDRLRRFGLDVSPTCLL 305
           K+ W+ I  H P  +W   VW   S P+ SF+LWL    RLST D ++ +      TC L
Sbjct: 6   KVTWNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNSGQQVTCTL 65

Query: 306 CNNENESLAHLFFSCDYSARV-------IAGNDWNVSDDWRDLIPR--NNSMRSQLCYLF 458
           C N  E+   LFFSC Y++ V       +  ND+  S DW  L+P   N +M + L +LF
Sbjct: 66  CGNAEETRNLLFFSCHYTSEVWRTLTQRLLSNDY--SRDWNRLLPLLCNTNMPTDLLFLF 123

Query: 459 ---IGCAVYNIWKERNDRLFGNTKNPSGSVAYRAKQMMRDRLSQI 584
                 +VY+IW+ERN R  G   +P   +     + +R+R++ I
Sbjct: 124 RYVFQASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRINSI 168


>ref|XP_002299084.1| predicted protein [Populus trichocarpa] gi|222846342|gb|EEE83889.1|
            predicted protein [Populus trichocarpa]
          Length = 949

 Score =  100 bits (248), Expect = 3e-19
 Identities = 63/185 (34%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
 Frame = +3

Query: 3    DSQWLIPPNHALAIDLGHQLSLVPLKNV-DKISWAGSSCVSRKL--IWDTIRTHVPSPSW 173
            D +W  PP H+    + + +   P  ++ D  +W G S  +  +   W+ +R   P  S 
Sbjct: 723  DGRWAFPPGHSDLQPVWNSILSQPRPHLCDYYTWPGHSSGNFSIDSAWELLRDSRPLDSL 782

Query: 174  INIVWNSCSIPRCSFILWLLFHGRLSTKDRLRRFGLDVSPTCLLCNNENESLAHLFFSCD 353
             +++W    IPR +FILW+    RL T DRL  FG+  S TC+LC   NE+  HLFF C 
Sbjct: 783  YHLIWFKGHIPRQAFILWIASMDRLHTMDRLTSFGIIPSSTCVLCGMHNETHDHLFFQCT 842

Query: 354  YSARVIAGN------------DWNVSDDWRDLIPRNNSMRSQ-LCYLFIGCAVYNIWKER 494
            YS+ ++ GN             WN    W     RNN   S  +  L +  +VY IW ER
Sbjct: 843  YSS-ILWGNISAKTLIAWPSLTWNGLLLWAGSTLRNNKEFSHIIARLVLSTSVYFIWFER 901

Query: 495  NDRLF 509
            N+R+F
Sbjct: 902  NNRIF 906