BLASTX nr result

ID: Bupleurum21_contig00036422 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036422
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003599625.1| F-box family protein [Medicago truncatula] g...    60   2e-07
ref|XP_002321943.1| f-box family protein [Populus trichocarpa] g...    60   2e-07
ref|XP_003624505.1| F-box family protein [Medicago truncatula] g...    57   1e-06
ref|XP_003614879.1| hypothetical protein MTR_5g060750 [Medicago ...    57   2e-06
ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_003599625.1| F-box family protein [Medicago truncatula]
           gi|355488673|gb|AES69876.1| F-box family protein
           [Medicago truncatula]
          Length = 322

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = -3

Query: 266 ILSYIDTRTAVQSSILSNRWRTVWTTLPFLRLDGYSDFFYR--KEVRFARFVDHVFFKRN 93
           ILS++DT+ AVQ+ ILS RW+ +W  +P LRL+ Y    Y   K   F +FV  +  KR+
Sbjct: 24  ILSFLDTKLAVQTCILSARWKNLWKHVPALRLNTYLHSLYTRIKLKGFTKFVSSILSKRD 83

Query: 92  HESLIISLELISKKGMSSHLVENYVNYAIS 3
             + + +LE      +  H+ +  + YA+S
Sbjct: 84  ASTALHTLEFRRTGLVEPHIFKRILKYAVS 113


>ref|XP_002321943.1| f-box family protein [Populus trichocarpa]
           gi|222868939|gb|EEF06070.1| f-box family protein
           [Populus trichocarpa]
          Length = 360

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/90 (38%), Positives = 51/90 (56%)
 Frame = -3

Query: 272 HKILSYIDTRTAVQSSILSNRWRTVWTTLPFLRLDGYSDFFYRKEVRFARFVDHVFFKRN 93
           HKILS +D R AVQ+S+LS RWR +WT+L  L  +G +   +   V F RFV  V   R 
Sbjct: 29  HKILSLVDLRCAVQTSVLSKRWRFLWTSLTDLNFNG-TCMDFTNFVTFNRFVSRVLSTR- 86

Query: 92  HESLIISLELISKKGMSSHLVENYVNYAIS 3
            +S +  ++L S       L++  + YA+S
Sbjct: 87  EDSNVYKIQLYSTWSPHHSLLDMVIKYAVS 116


>ref|XP_003624505.1| F-box family protein [Medicago truncatula]
           gi|355499520|gb|AES80723.1| F-box family protein
           [Medicago truncatula]
          Length = 357

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/88 (38%), Positives = 51/88 (57%)
 Frame = -3

Query: 266 ILSYIDTRTAVQSSILSNRWRTVWTTLPFLRLDGYSDFFYRKEVRFARFVDHVFFKRNHE 87
           ILS ++T+ AVQ+ ILS RW+ +W  LP L L   SDF  R   RFA+FV  V   RN  
Sbjct: 30  ILSSLNTKHAVQTCILSTRWKNLWKRLPSLALRS-SDF--RNVKRFAKFVSRVLSLRNDS 86

Query: 86  SLIISLELISKKGMSSHLVENYVNYAIS 3
           + + +++      +  +L++  V YA+S
Sbjct: 87  TSLHTVDFCRTAIVEPYLLKKIVKYAVS 114


>ref|XP_003614879.1| hypothetical protein MTR_5g060750 [Medicago truncatula]
           gi|355516214|gb|AES97837.1| hypothetical protein
           MTR_5g060750 [Medicago truncatula]
          Length = 370

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = -3

Query: 266 ILSYIDTRTAVQSSILSNRWRTVWTTLPFLRLDGYSDFFYRKEVR-FARFVDHVFFKRNH 90
           ILS++DT+ AVQ+ ILS RW  +W  L  L+L   S   + K ++ F +FV HV   RN 
Sbjct: 31  ILSFLDTKHAVQTCILSPRWNNLWKHLSSLKL---SSIHFPKNLKGFTKFVSHVLSLRND 87

Query: 89  ESLIISLELISKKGMSSHLVENYVNYAIS 3
            + +++L+      M   L++  + YA S
Sbjct: 88  TTSLLALDFHRSGTMDPRLLKRILKYAFS 116


>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
 Frame = -3

Query: 272 HKILSYIDTRTAVQSSILSNRWRTVWTTLPFLRLDG-------YSDFFYRKEVRFARFVD 114
           H+ILS++D    VQ+ +LS RW  VW + P+L  +         SD++  + V F  F++
Sbjct: 27  HRILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYEDEMVNFTDFIN 86

Query: 113 HVFFKRNH-ESLIISLELISKKGMSSHLVENYVNYAI 6
            V  +RN+ +++ ISL+L      S  LVE+ + YA+
Sbjct: 87  QVLVRRNNFKAIKISLDLCGHTRYS--LVESLIYYAV 121


Top