BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036326
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...    92   3e-17
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...    86   2e-15
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...    84   2e-14
emb|CBI21137.3| unnamed protein product [Vitis vinifera]               80   1e-13
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...    80   1e-13

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
 Frame = -2

Query: 314 KICLKRLCFANNLAWVASYRHAVKSKRIYVDLKEQ*KDDIGSGGKVLCVYFGA-EFLLWI 138
           +ICLKRL  +N+ +W  +YR   K KR+Y+ L+   ++ I  G KVL VYF A EF +WI
Sbjct: 61  QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWI 120

Query: 137 LLFAVG----EGVVDLIDADPEDSSNVNILIASIPHTDEEC 27
           L FA+G    + VV+LID D EDS  VN+LIASI   DE C
Sbjct: 121 LFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENC 161


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
 Frame = -2

Query: 314 KICLKRLCFANNLAWVASYRHAVKSKRIYVDLKEQ*K-DDIGSGGKVLCVYFGAEFLLWI 138
           ++CLKRL  +NN  W+  YR   K KR+Y+ L E  K + I  G K L VY  AE  +W+
Sbjct: 254 QLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYILAEMPIWV 313

Query: 137 LLFAVG----EGVVDLIDADPEDSSNVNILIASIPHTDEECD 24
           L FA+G      VV+LID D ED++ VNIL+ASI   D+ C+
Sbjct: 314 LFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCE 355


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
 Frame = -2

Query: 314 KICLKRLCFANNLAWVASYRHAVKSKRIYVDLKEQ*K-DDIGSGGKVLCVYFGAEFLLWI 138
           +ICLKRL  +N+  W+ +YR   K  R+Y+ L E  K + I    K L VYF AE  +W+
Sbjct: 260 QICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFFAEMPIWV 319

Query: 137 LLFAVG----EGVVDLIDADPEDSSNVNILIASIPHTDEECD 24
           L FA+G      VVDLID D +D++ +NIL+ASI   D+ C+
Sbjct: 320 LFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCE 361


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 6/105 (5%)
 Frame = -2

Query: 314 KICLKRLCFANNLAWVASYRHAVKSKRIYVDLKEQ*KDDIGSGG-KVLCVYFGA-EFLLW 141
           +ICLKRL  ++N  W+ +YR   K KR+YV L E  KD+   GG KVL VYF + E  +W
Sbjct: 273 QICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTVYFSSTEIPIW 331

Query: 140 ILLFAVG----EGVVDLIDADPEDSSNVNILIASIPHTDEECDKE 18
           IL FA+G    + VVDLID + +D+   NIL+ASI   D E +K+
Sbjct: 332 ILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 376


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 6/105 (5%)
 Frame = -2

Query: 314 KICLKRLCFANNLAWVASYRHAVKSKRIYVDLKEQ*KDDIGSGG-KVLCVYFGA-EFLLW 141
           +ICLKRL  ++N  W+ +YR   K KR+YV L E  KD+   GG KVL VYF + E  +W
Sbjct: 237 QICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTVYFSSTEIPIW 295

Query: 140 ILLFAVG----EGVVDLIDADPEDSSNVNILIASIPHTDEECDKE 18
           IL FA+G    + VVDLID + +D+   NIL+ASI   D E +K+
Sbjct: 296 ILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 340