BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036247
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi...   266   1e-69
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi...   239   1e-61
ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|2...   234   6e-60
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,...   230   9e-59
ref|XP_002889980.1| pentatricopeptide repeat-containing protein ...   215   3e-54

>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
           gi|296081374|emb|CBI16807.3| unnamed protein product
           [Vitis vinifera]
          Length = 519

 Score =  266 bits (681), Expect = 1e-69
 Identities = 123/176 (69%), Positives = 153/176 (86%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           DEMT+S+CRVFSIDYNR IGVL+ +SRFDLAE YY +MIP+GFSL+SFTYSRFISGLCKV
Sbjct: 33  DEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKV 92

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
            +F LI++LL+DMD++G VPDIWA N+Y+NLLC EN +DVAL V+Q M +KGREPD+V+Y
Sbjct: 93  KNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTY 152

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYELTL 528
           TIVI+GLC+  R D+AV++W  M+ KG  PD+KACRA+VLGLC  GK+DLAYELT+
Sbjct: 153 TIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTV 208



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 44/172 (25%), Positives = 80/172 (46%)
 Frame = +1

Query: 7   MTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVND 186
           M  + C    + YN ++     +   + AE    KM   G     ++Y+  + GLCK N 
Sbjct: 245 MRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANR 304

Query: 187 FELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTI 366
            +    ++ +  +   + D+ + N  +  LC+ +    A ++ + M  KG  PDVV++TI
Sbjct: 305 LDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTI 364

Query: 367 VISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           +I    +    + A K+   M G G++PD      IV  LC  GK+ +A+ +
Sbjct: 365 LIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSV 416



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 45/159 (28%), Positives = 76/159 (47%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + YN II  L + S    A   + +M  KG +    T++  I    +     + ++LL  
Sbjct: 325 VSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQ 384

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M  +G++PD       ++ LC    + +A  V   M + G  PDVVSY  +I+GLC+  R
Sbjct: 385 MTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASR 444

Query: 397 IDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLA 513
           +  A+ ++  M   G  PD+   + I+ GL    K+ +A
Sbjct: 445 VSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVA 483



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 36/198 (18%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFS---------------------------- 132
           + Y  +I  L    RFD A   +  M+ KGFS                            
Sbjct: 150 VTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVG 209

Query: 133 -------LHSFTYSRFISGLCKVNDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENL 291
                       Y+  I+G C+    +  Q ++  M + G  PD+   N+ +N  C E L
Sbjct: 210 AMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELL 269

Query: 292 VDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRIDAA-VKMWHTMIGKGIVPDDKACR 468
           ++ A  +++ M + G EPDV SY  ++ GLCK  R+D A + M + M  KG+  D  +  
Sbjct: 270 LEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLC-DVVSYN 328

Query: 469 AIVLGLCDVGKIDLAYEL 522
            I+  LC       AY+L
Sbjct: 329 TIIKALCTASHTKRAYKL 346



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
 Frame = +1

Query: 43  YNRIIGVLISKSRFDLAECYY-SKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDM 219
           YN ++  L   +R D A     +KM  KG      +Y+  I  LC  +  +   +L ++M
Sbjct: 292 YNELLKGLCKANRLDKAYMMMVNKMEAKGLC-DVVSYNTIIKALCTASHTKRAYKLFEEM 350

Query: 220 DKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRI 399
              G+ PD+    + +     E   ++A ++L  M   G  PD V YT ++  LCK  ++
Sbjct: 351 GGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKM 410

Query: 400 DAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
             A  ++  M+  GI PD  +  A++ GLC   ++  A  L
Sbjct: 411 GMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHL 451



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
 Frame = +1

Query: 43  YNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDMD 222
           YN +I         D A+   S M   G      TY+  ++  C     E  + L++ M+
Sbjct: 222 YNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKME 281

Query: 223 KIGVVPDIWACNLYMNLLCSENLVDVA-LEVLQVMAKKGREPDVVSYTIVISGLCKVKRI 399
           + GV PD+++ N  +  LC  N +D A + ++  M  KG   DVVSY  +I  LC     
Sbjct: 282 RSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGL-CDVVSYNTIIKALCTASHT 340

Query: 400 DAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
             A K++  M GKGI PD      ++      G  ++A +L
Sbjct: 341 KRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKL 381



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/147 (23%), Positives = 67/147 (45%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + +  +I   + +   ++A+    +M   G       Y+  +  LCK     +   +  D
Sbjct: 360 VTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCD 419

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M + G+ PD+ + N  +N LC  + V  A+ + + M   G  PD V++ ++I GL   K+
Sbjct: 420 MVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKK 479

Query: 397 IDAAVKMWHTMIGKGIVPDDKACRAIV 477
           +  A ++W  M+ KG   D      +V
Sbjct: 480 LSVACRVWDQMMEKGFTLDGAVSETLV 506


>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
           gi|449494962|ref|XP_004159696.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  239 bits (611), Expect = 1e-61
 Identities = 113/176 (64%), Positives = 141/176 (80%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           DEMT+SDC V S DYNR IGVLIS+SRFDLAE YYS+MIP+GFSL  FTYSRFIS LC++
Sbjct: 33  DEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEI 92

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
            +F LI RLL+DM ++G +PDIWA N+Y+NLL  ENL+++AL+    M  KGREPDVV+Y
Sbjct: 93  KNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREPDVVTY 152

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYELTL 528
           TI++  LCK K+ D AV+ W  M+ KG+ PD KAC A+V+GLCD GK+DLAYELT+
Sbjct: 153 TIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGKVDLAYELTV 208



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 39/129 (30%), Positives = 65/129 (50%)
 Frame = +1

Query: 136 HSFTYSRFISGLCKVNDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVL 315
           ++  ++  +SG CK         +   M K G  PD+   N+ +N  C   ++++A + +
Sbjct: 218 NNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSM 277

Query: 316 QVMAKKGREPDVVSYTIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDV 495
           + M + G EPDV SY  ++ GLCK  R+D A K+ +TM  KG+  D  +   ++  LC  
Sbjct: 278 KKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLC-DTVSYNTVIGALCKS 336

Query: 496 GKIDLAYEL 522
                AY L
Sbjct: 337 FATRKAYRL 345



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 42/163 (25%), Positives = 78/163 (47%)
 Frame = +1

Query: 34  SIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQ 213
           ++ YN +IG L        A   + +M  K  +    T++  I          + + LLQ
Sbjct: 323 TVSYNTVIGALCKSFATRKAYRLFEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQ 382

Query: 214 DMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVK 393
            M +  ++PD+      ++  C    +++A  V + M + G  PDVVSY  +I+GLCK  
Sbjct: 383 TMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKAS 442

Query: 394 RIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           ++  A+ ++  M  +G  PD+   + I+ GL    ++ LA ++
Sbjct: 443 KVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQV 485



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 32/102 (31%), Positives = 56/102 (54%)
 Frame = +1

Query: 148 YSRFISGLCKVNDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMA 327
           Y+  +   CK    E+ Q + +DM +IG+ PD+ + N  +N LC  + V  A+ + + M 
Sbjct: 396 YTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQ 455

Query: 328 KKGREPDVVSYTIVISGLCKVKRIDAAVKMWHTMIGKGIVPD 453
            +G  PD V++ ++I GL + K +  A ++W  M+ KG   D
Sbjct: 456 IRGCYPDEVTFKLIIGGLLRKKELSLACQVWDQMMEKGYTLD 497



 Score = 61.6 bits (148), Expect = 7e-08
 Identities = 39/137 (28%), Positives = 64/137 (46%)
 Frame = +1

Query: 43  YNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDMD 222
           +N ++       R   A    S M   G      TY+  ++  C     EL  + ++ M+
Sbjct: 222 FNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKME 281

Query: 223 KIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRID 402
           +IG+ PD+++ N  +  LC  N +D A +++  M +KG   D VSY  VI  LCK     
Sbjct: 282 RIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGL-CDTVSYNTVIGALCKSFATR 340

Query: 403 AAVKMWHTMIGKGIVPD 453
            A +++  M  K + PD
Sbjct: 341 KAYRLFEEMGQKDVAPD 357


>ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|222852487|gb|EEE90034.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  234 bits (597), Expect = 6e-60
 Identities = 113/176 (64%), Positives = 137/176 (77%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           DEMT S+CRVF IDYNR IGVLI  SRFDLA  YYSKM P GFSL SFTYSRFISGLC+ 
Sbjct: 33  DEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQT 92

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
            +F  I  LL+DM+K+  VPDIWA N+Y+NLL  EN  + ALEV   M ++GREPDVV++
Sbjct: 93  KEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTF 152

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYELTL 528
           TI+I GLCK+K+ DAAV+ W  M+ KGI PD+KAC A+ +GLCD G++DLAYEL +
Sbjct: 153 TIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAYELII 208



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
 Frame = +1

Query: 43  YNRIIGVLISKSRFDLAECYY-SKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDM 219
           YN+++      +  D A  +  +KM+PKGF     +Y+  I   C +++     +L ++M
Sbjct: 293 YNQLLKAHCKANHPDKAYLFMVTKMVPKGFC-DVVSYNTIIKAFCSISNNRRAYKLFEEM 351

Query: 220 DKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRI 399
            + G+ PD+    + +     E   D+A ++L +MA  G  PD + YT +I   CK  ++
Sbjct: 352 GRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKV 411

Query: 400 DAAVKMWHTMIGKGIVPDDKACRAIVLGLCD---VGKIDLAYELTL 528
           + A  ++  M+ KGI PD  +  A++ G C    VG++   YE  L
Sbjct: 412 EMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQML 457



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 42/156 (26%), Positives = 75/156 (48%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + YN II    S S    A   + +M  KG +    T++  I    +  + ++ ++LL  
Sbjct: 326 VSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDL 385

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M  +G++PD       ++  C    V++A  +   M +KG  PDVVSY  +I+G CK  R
Sbjct: 386 MAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLR 445

Query: 397 IDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKI 504
           +   + ++  M+ +G  PD+   + I+  L    K+
Sbjct: 446 VGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENKL 481



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
 Frame = +1

Query: 28  VFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRL 207
           V ++ YN +I       R D A    S M   G      TY+  ++  C    FE   +L
Sbjct: 218 VSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKL 277

Query: 208 LQDMDKIGVVPDIWACNLYMNLLCSENLVDVA-LEVLQVMAKKGREPDVVSYTIVISGLC 384
           L+ M+   + PD+++ N  +   C  N  D A L ++  M  KG   DVVSY  +I   C
Sbjct: 278 LKKMECSAIEPDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKG-FCDVVSYNTIIKAFC 336

Query: 385 KVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
            +     A K++  M  KGI PD      ++      G  D+A +L
Sbjct: 337 SISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKL 382



 Score = 61.6 bits (148), Expect = 7e-08
 Identities = 32/139 (23%), Positives = 63/139 (45%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + +  +I   + +   D+A+     M   G       Y+  I   CK    E+   +  D
Sbjct: 361 VTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCD 420

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M + G+ PD+ + N  +N  C    V   + + + M ++G  PD V+Y ++I  L +  +
Sbjct: 421 MVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENK 480

Query: 397 IDAAVKMWHTMIGKGIVPD 453
           +  A ++W  M+ +G+  D
Sbjct: 481 LSDACRVWDQMMERGLTLD 499



 Score = 61.2 bits (147), Expect = 9e-08
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
 Frame = +1

Query: 64  LISKSRFDLAECYYSKMIPKGFS-LHSFTYSRFISGLCKVNDFELIQRLLQDMDKIGVVP 240
           L    + DLA      +I  G S + +  Y+  ISG C+    +    ++  M + G  P
Sbjct: 194 LCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKP 253

Query: 241 DIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRIDAAVKMW 420
           D+   N+ +N  C+E + + A+++L+ M     EPDV SY  ++   CK    D A    
Sbjct: 254 DLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAHCKANHPDKAYLFM 313

Query: 421 HT-MIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
            T M+ KG   D  +   I+   C +     AY+L
Sbjct: 314 VTKMVPKGFC-DVVSYNTIIKAFCSISNNRRAYKL 347


>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  230 bits (587), Expect = 9e-59
 Identities = 108/176 (61%), Positives = 138/176 (78%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           DEM++S+CRVFSIDYNR IGVLI+ SRFDLA  YYS+M  +GFSL SFTYSRFI+GLCKV
Sbjct: 33  DEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCKV 92

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
            +F  I  LL DM+ +  +PDIWA N+Y++LL  E  +D+ALEV + + K GR+PDVV+Y
Sbjct: 93  KNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTY 152

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYELTL 528
           TI+I G+CK+K+ D A++ W  MI KG  PD+KAC AIV+GLCD  K+DLAYEL +
Sbjct: 153 TIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELII 208



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 44/159 (27%), Positives = 76/159 (47%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + YN II           A   + +M  KG      T++ FI        F + ++LL  
Sbjct: 326 VSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQ 385

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M ++G+ PD       ++ LC    V++A  +   M ++G  PDV+S+  +I+G CK  R
Sbjct: 386 MTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSR 445

Query: 397 IDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLA 513
           +  A+ ++  M  +G  PD+   + I+ GL +  KI +A
Sbjct: 446 VSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIA 484



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 43/161 (26%), Positives = 75/161 (46%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           +EM +       + +   I   + K  F++A+    +M   G S     Y+  I  LCK 
Sbjct: 349 EEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKS 408

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
              E+   +  DM + G+ PD+ + N  +N  C  + V  A+ + + M  +G  PD V+Y
Sbjct: 409 GKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTY 468

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLG 483
            ++I GL + K+I  A  +W  M+ KG   D    + ++ G
Sbjct: 469 KLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIRG 509



 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 38/139 (27%), Positives = 71/139 (51%)
 Frame = +1

Query: 106 SKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSE 285
           +KM PKG      +Y+  I   CK+ D     +L ++M + G+ PD+    +++     +
Sbjct: 315 NKMWPKGLC-DVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGK 373

Query: 286 NLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKAC 465
              ++A ++L  M + G  PD + YT +I  LCK  +++ A  ++  M+ +GI PD  + 
Sbjct: 374 GSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISF 433

Query: 466 RAIVLGLCDVGKIDLAYEL 522
            A++ G C   ++  A  L
Sbjct: 434 NALINGFCKCSRVSEAMHL 452



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 37/199 (18%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFS---------------------------- 132
           + Y  II  +    +FD A  ++  MI KGFS                            
Sbjct: 150 VTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIID 209

Query: 133 --------LHSFTYSRFISGLCKVNDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSEN 288
                   L +  Y+  ISG C+    +  Q +   M + G  PD+   N+++N  C E 
Sbjct: 210 VMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDEL 269

Query: 289 LVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKRIDAA-VKMWHTMIGKGIVPDDKAC 465
           ++D A ++L++M + G EPDV SY  ++ G+CK    D A + M + M  KG+  D  + 
Sbjct: 270 MLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLC-DVVSY 328

Query: 466 RAIVLGLCDVGKIDLAYEL 522
             I+   C +G    AY+L
Sbjct: 329 NTIIKAFCKIGDTTSAYKL 347



 Score = 71.2 bits (173), Expect = 9e-11
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
 Frame = +1

Query: 43  YNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQDMD 222
           +N  + +L  + R DLA   + K++  G      TY+  I G+CK+  F+   +  +DM 
Sbjct: 117 FNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMI 176

Query: 223 KIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGR-EPDVVSYTIVISGLCKVKRI 399
             G  PD  AC   +  LC    VD+A E++  + K GR +   + Y  +ISG C+  RI
Sbjct: 177 HKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRI 236

Query: 400 DAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           D A  +   M   G  PD       +   CD   +D A +L
Sbjct: 237 DKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKL 277



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 1/175 (0%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           D M     ++ ++ YN +I       R D A+   S M   G      TY+ F++  C  
Sbjct: 209 DVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDE 268

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVA-LEVLQVMAKKGREPDVVS 357
              +  ++LL+ M++ G+ PD+++ N  +  +C  N  D A L +   M  KG   DVVS
Sbjct: 269 LMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGL-CDVVS 327

Query: 358 YTIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           Y  +I   CK+    +A K++  M  KGI PD       +      G  ++A +L
Sbjct: 328 YNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKL 382


>ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335822|gb|EFH66239.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 517

 Score =  215 bits (548), Expect = 3e-54
 Identities = 102/174 (58%), Positives = 131/174 (75%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           DEM  S  RVFS DYNR IGVL+ +SRF+LAE  Y  M+P GFSL  FTYSRFISGLCKV
Sbjct: 33  DEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYSRFISGLCKV 92

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
             FELI  LL+DM+ +G +PDIWA N+Y++LLC EN V  A++    M ++GREPDVVSY
Sbjct: 93  KKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSY 152

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           TI+I+GL +  ++  AV++W+ MI  G+ PD+KAC A+V+GLC   K+DLAYE+
Sbjct: 153 TILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEM 206



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 44/162 (27%), Positives = 77/162 (47%)
 Frame = +1

Query: 37  IDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKVNDFELIQRLLQD 216
           + Y+ +I      S    A   + +M  KG   +  T++  I    +  +  + ++LL  
Sbjct: 326 VSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQ 385

Query: 217 MDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSYTIVISGLCKVKR 396
           M ++G+ PD       ++ LC    VD A  +   M +    PD +SY  +ISGLC+  R
Sbjct: 386 MTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGR 445

Query: 397 IDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDVGKIDLAYEL 522
           +  A+K++  M GK   PD+   + I+ GL    K+  AY++
Sbjct: 446 VTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKV 487



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 37/165 (22%), Positives = 73/165 (44%)
 Frame = +1

Query: 1   DEMTESDCRVFSIDYNRIIGVLISKSRFDLAECYYSKMIPKGFSLHSFTYSRFISGLCKV 180
           +EM +       + +  +I   + +    +A+    +M   G S     Y+  +  LCK 
Sbjct: 349 EEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKS 408

Query: 181 NDFELIQRLLQDMDKIGVVPDIWACNLYMNLLCSENLVDVALEVLQVMAKKGREPDVVSY 360
            + +    +  DM +  + PD  + N  ++ LC    V  A+++ + M  K   PD +++
Sbjct: 409 GNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTF 468

Query: 361 TIVISGLCKVKRIDAAVKMWHTMIGKGIVPDDKACRAIVLGLCDV 495
             +I GL + K++ AA K+W  M+ KG   D      ++   C +
Sbjct: 469 KFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASCSM 513