BLASTX nr result

ID: Bupleurum21_contig00036233 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036233
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ72555.1| putative retroelement polyprotein [Malus x domest...   134   1e-29
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]   133   1e-29
ref|XP_003602418.1| Stomatin-like protein [Medicago truncatula] ...   130   1e-28
emb|CAN74964.1| hypothetical protein VITISV_006810 [Vitis vinifera]   130   1e-28
emb|CAN60648.1| hypothetical protein VITISV_033947 [Vitis vinifera]   129   2e-28

>gb|AEJ72555.1| putative retroelement polyprotein [Malus x domestica]
          Length = 1249

 Score =  134 bits (336), Expect = 1e-29
 Identities = 61/108 (56%), Positives = 83/108 (76%)
 Frame = +3

Query: 3    VNWKSKKQSVVSRSTAESELRALADTACDLAWMVLLLTELHVPQSLPLTIHCDNQAALDI 182
            V WKSKKQSVV+RS+AE+E RA+A T C+L W+  LL +L   ++LP+ + CDNQAA+ I
Sbjct: 1121 VTWKSKKQSVVARSSAEAEYRAMASTTCELIWLQGLLNDLGFKRTLPMPLFCDNQAAIYI 1180

Query: 183  AADPVFHPKTKHFALDCHFVREQVQMHILNPCYISTTCQLADIFTKGL 326
            A++PVFH +TKH  +DCHFVRE+ Q  ++   ++ +T QLADIFTKGL
Sbjct: 1181 ASNPVFHERTKHIEMDCHFVREKTQSDVIQHVFVRSTDQLADIFTKGL 1228


>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
          Length = 1813

 Score =  133 bits (335), Expect = 1e-29
 Identities = 60/110 (54%), Positives = 82/110 (74%)
 Frame = +3

Query: 3    VNWKSKKQSVVSRSTAESELRALADTACDLAWMVLLLTELHVPQSLPLTIHCDNQAALDI 182
            ++WKSKKQ+ VSRS+AE+E RA+A+T  +L W+  +L +L V    P  + CDNQAAL I
Sbjct: 1601 ISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILKDLKVELDKPAPLFCDNQAALYI 1660

Query: 183  AADPVFHPKTKHFALDCHFVREQVQMHILNPCYISTTCQLADIFTKGLNK 332
            AA+PVFH +TKH  +DCH VRE++Q  ++ PCY+ST  QLAD+FTK L +
Sbjct: 1661 AANPVFHERTKHIEIDCHIVREKLQAGVIRPCYVSTKMQLADVFTKALGR 1710


>ref|XP_003602418.1| Stomatin-like protein [Medicago truncatula]
           gi|355491466|gb|AES72669.1| Stomatin-like protein
           [Medicago truncatula]
          Length = 605

 Score =  130 bits (326), Expect = 1e-28
 Identities = 58/110 (52%), Positives = 81/110 (73%)
 Frame = +3

Query: 3   VNWKSKKQSVVSRSTAESELRALADTACDLAWMVLLLTELHVPQSLPLTIHCDNQAALDI 182
           ++WK+KKQ VVSRS+AESE R++A+T C+L W+  +L  L +  S+P+ ++CD+Q+AL I
Sbjct: 477 ISWKTKKQQVVSRSSAESEYRSMANTTCELKWVKSILCSLGISHSMPMQLYCDSQSALHI 536

Query: 183 AADPVFHPKTKHFALDCHFVREQVQMHILNPCYISTTCQLADIFTKGLNK 332
           A +PVFH +TKH  LDCHFVR ++    L P Y+ST  QLADI TK L +
Sbjct: 537 AKNPVFHERTKHIELDCHFVRNEILHGQLQPSYVSTHAQLADILTKALGR 586


>emb|CAN74964.1| hypothetical protein VITISV_006810 [Vitis vinifera]
          Length = 1248

 Score =  130 bits (326), Expect = 1e-28
 Identities = 57/109 (52%), Positives = 82/109 (75%)
 Frame = +3

Query: 3    VNWKSKKQSVVSRSTAESELRALADTACDLAWMVLLLTELHVPQSLPLTIHCDNQAALDI 182
            V+WKSKKQ+VVSRS+AESE RA+A   C++ W+  LL E+ +   +P  + CDNQAA+ I
Sbjct: 1120 VSWKSKKQNVVSRSSAESENRAMAQATCEIMWLYHLLIEIGIKTPMPAKLGCDNQAAIHI 1179

Query: 183  AADPVFHPKTKHFALDCHFVREQVQMHILNPCYISTTCQLADIFTKGLN 329
            A++PV+H +TKH  +DCHF+RE++Q ++++  Y+ T  QL DIFTK LN
Sbjct: 1180 ASNPVYHERTKHIEVDCHFIREKIQENLISTSYVKTGEQLGDIFTKALN 1228


>emb|CAN60648.1| hypothetical protein VITISV_033947 [Vitis vinifera]
          Length = 1257

 Score =  129 bits (325), Expect = 2e-28
 Identities = 59/109 (54%), Positives = 82/109 (75%)
 Frame = +3

Query: 3    VNWKSKKQSVVSRSTAESELRALADTACDLAWMVLLLTELHVPQSLPLTIHCDNQAALDI 182
            V WKSKKQSVVSRS+AESE RA+A   C++ W+  LL E+ +  ++P  + CDNQAAL I
Sbjct: 1130 VAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQAALHI 1189

Query: 183  AADPVFHPKTKHFALDCHFVREQVQMHILNPCYISTTCQLADIFTKGLN 329
            AA+PV+H +TKH  +DCHF+RE+++ ++++  Y+ T  QL DIFTK LN
Sbjct: 1190 AANPVYHERTKHIEVDCHFIREKIEENLVSTSYVKTREQLGDIFTKALN 1238


Top