BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036227
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79868.1| hypothetical protein VITISV_011481 [Vitis vinifera]   135   7e-30
dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis t...   123   2e-26
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop...   122   3e-26
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   119   3e-25
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...   116   2e-24

>emb|CAN79868.1| hypothetical protein VITISV_011481 [Vitis vinifera]
          Length = 154

 Score =  135 bits (339), Expect = 7e-30
 Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
 Frame = -3

Query: 530 DPSSIYFLHPSEGLGMSLTKYVLTGDNYDVWAKAIINGLEGKNKQGFVNGEIVKPTDEKS 351
           +PSS  +LHPS+  G ++T  V  G+NYD+W KA+ N L  KNK G ++G + KP  E  
Sbjct: 13  EPSSPLYLHPSDNPGATITTCVFNGENYDMWEKAVKNALRAKNKLGIIDGTVNKPKGENG 72

Query: 350 PDFIAWRANNSTICGWLFNSIDAAIQPSIAGHKIASEMWSDLKERYAVVNGPRTHQ-KSH 174
            +  AW A NS I  W+FN ID ++  S+A  + A +MW DLKERYAV N PR HQ +S 
Sbjct: 73  NELNAWEACNSMIISWMFNVIDKSLHSSVAYAQTAKDMWEDLKERYAVGNAPRVHQLRSE 132

Query: 173 YHSLQQKGMNVVTYY 129
             +L+Q+GM V  YY
Sbjct: 133 IVNLKQEGMTVAAYY 147


>dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 370

 Score =  123 bits (309), Expect = 2e-26
 Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
 Frame = -3

Query: 581 PNMTGGEIIVKTPQLIHDPSSIYFLHPSEGLGMSLTKYVLTGDNYDVWAKAIINGLEGKN 402
           P  +GG ++V+ P       S Y L  S+  G  +T  VL GDNY+ W++ ++N L+ K 
Sbjct: 8   PVGSGGALVVQPPSASSVVQSPYTLSNSDNPGTLITSVVLNGDNYNEWSEEMLNALQAKR 67

Query: 401 KQGFVNGEIVKPTDEKSPDFIAWRANNSTICGWLFNSIDAAIQPSIAGHKIASEMWSDLK 222
           K GF++G I KP  + SPDF  W+  NS I GW+  SI+  ++ ++     A  +W +L+
Sbjct: 68  KTGFIDGTIQKPASD-SPDFENWKTVNSMIVGWIRVSIEPKVKSTVTFISDAHLLWDELR 126

Query: 221 ERYAVVNGPRTHQ-KSHYHSLQQKGMNVVTYYNQFKALWDALYGSEDITCGCVC---AAA 54
           +R++V N  R HQ K+   S +Q+G  V+ YY +   LWD L   ++     VC   +  
Sbjct: 127 QRFSVTNNVRVHQIKAQLASCRQEGQTVIDYYGRLCNLWDEL---KNYQASAVCPHGSVL 183

Query: 53  TKLCTRAENAKTHDFLL 3
           T +    ++ K H F+L
Sbjct: 184 TAIVKERDDEKLHQFVL 200


>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
          Length = 1152

 Score =  122 bits (307), Expect = 3e-26
 Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
 Frame = -3

Query: 524 SSIYFLHPSEGLGMSLTKYVLTGDNYDVWAKAIINGLEGKNKQGFVNGEIVKPTDEKSPD 345
           +S Y+LHPS+     LT  +L G+NY+ WAK   N L+ K K GF++G + KP+ + SPD
Sbjct: 22  ASPYYLHPSDHPHHVLTPMLLNGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSD-SPD 80

Query: 344 FIAWRANNSTICGWLFNSIDAAIQPSIAGHKIASEMWSDLKERYAVVNGPRTHQ-KSHYH 168
           +  W   NS + GWL+ S+D  +Q SI+    A  MW  L+ RY+V N  R HQ K    
Sbjct: 81  YPRWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQLKYDIV 140

Query: 167 SLQQKGMNVVTYYNQFKALWDALYGSED-ITCGC---VCAAATKLCTRAENAKTHDFLL 3
           + +Q G     Y+ + K +WD L   E  +TC C    C    +   R ++ + H FL+
Sbjct: 141 ACRQDGQTAANYFGKLKVMWDDLDDYEPLLTCCCNRPSCTHRVRQSQRRDHERIHQFLM 199


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  119 bits (299), Expect = 3e-25
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
 Frame = -3

Query: 521 SIYFLHPSEGLGMSLTKYVLTGDNYDVWAKAIINGLEGKNKQGFVNGEIVKPTDEKSPDF 342
           S Y L  S+  G  ++  +LTGDNY+ W+  ++N L+ K K GF+NG I KP  + +PD+
Sbjct: 25  SPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKPPLD-NPDY 83

Query: 341 IAWRANNSTICGWLFNSIDAAIQPSIAGHKIASEMWSDLKERYAVVNGPRTHQ-KSHYHS 165
             W+A NS I GW+  SI+  ++ ++     A ++WS+LK+R++V N  R HQ K+   +
Sbjct: 84  ENWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIKAQLAA 143

Query: 164 LQQKGMNVVTYYNQFKALWDALYGSEDIT---CG-CVCAAATKLCTRAENAKTHDFLL 3
            +Q G  V+ YY +   LW+     + IT   CG C C A  +     E  K H F+L
Sbjct: 144 CRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVL 201


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  116 bits (291), Expect = 2e-24
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
 Frame = -3

Query: 521 SIYFLHPSEGLGMSLTKYVLTGDNYDVWAKAIINGLEGKNKQGFVNGEIVKPTDEKSPDF 342
           S Y L  S+  G  ++  +LTGDNY+ W+  ++N L+ K K GF+NG I KP  + +PD+
Sbjct: 25  SPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLD-NPDY 83

Query: 341 IAWRANNSTICGWLFNSIDAAIQPSIAGHKIASEMWSDLKERYAVVNGPRTHQ-KSHYHS 165
             W+A NS I GW+  SI+  ++ ++     A ++WS+LK+R++V N    HQ K+   +
Sbjct: 84  ENWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAA 143

Query: 164 LQQKGMNVVTYYNQFKALWDALYGSEDIT---CG-CVCAAATKLCTRAENAKTHDFLL 3
            +Q G  V+ YY +   LW+     + IT   CG C C A  +     E  K H F+L
Sbjct: 144 CRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVL 201