BLASTX nr result
ID: Bupleurum21_contig00035874
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00035874
(461 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002528570.1| pentatricopeptide repeat-containing protein,... 216 2e-54
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera] 213 1e-53
ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi... 213 1e-53
ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containi... 212 2e-53
ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|2... 209 2e-52
>ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532014|gb|EEF33825.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 542
Score = 216 bits (550), Expect = 2e-54
Identities = 101/141 (71%), Positives = 122/141 (86%)
Frame = +1
Query: 10 VFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHGK 189
VF++ M++G+CNAL+TG SRNGL+D+AL VF++FK QG+EL+VVSWTS+IASCSQ+GK
Sbjct: 296 VFDEMYHMDVGACNALVTGLSRNGLVDKALQVFRRFKDQGMELNVVSWTSIIASCSQNGK 355
Query: 190 DSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGSA 369
D +ALELFREMQ GVKPNA+TIPCLLPACGNIAALMHGKA H FS++ GIS +VYVGSA
Sbjct: 356 DIEALELFREMQVVGVKPNAVTIPCLLPACGNIAALMHGKAAHCFSLKSGISSNVYVGSA 415
Query: 370 LIDMYANCGRIQAARRCFGSM 432
L+DMYA CGRI +R CF M
Sbjct: 416 LVDMYAKCGRIHISRLCFDIM 436
Score = 89.4 bits (220), Expect = 3e-16
Identities = 48/142 (33%), Positives = 76/142 (53%)
Frame = +1
Query: 7 RVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHG 186
+VF+K ++ + +AL+ G++R G I E + +F K GVEL+++SW MIA +
Sbjct: 159 KVFDKLSQPDVVAYSALLAGYARRGCIGETMELFSKRGDLGVELNLISWNGMIAGFNHSR 218
Query: 187 KDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGS 366
A+ +F+ M KP+ +I +L A G++ L G +HG+ I++G+ D V S
Sbjct: 219 HHLDAVIIFQNMHCEEFKPDGTSISSVLSAVGDLKMLDMGFQIHGYVIKQGLCQDKCVVS 278
Query: 367 ALIDMYANCGRIQAARRCFGSM 432
ALIDMY C F M
Sbjct: 279 ALIDMYGKCACTMKISEVFDEM 300
>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 213 bits (543), Expect = 1e-53
Identities = 101/141 (71%), Positives = 121/141 (85%)
Frame = +1
Query: 1 MLRVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQ 180
M +VF++ M++GSCNA I G SRNG ++ +L +F++ K QG+EL+VVSWTSMIA CSQ
Sbjct: 304 MSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQ 363
Query: 181 HGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYV 360
+G+D +ALELFREMQ AGVKPN++TIPCLLPACGNIAALMHGKA H FS+RRGIS DVYV
Sbjct: 364 NGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYV 423
Query: 361 GSALIDMYANCGRIQAARRCF 423
GSALIDMYA CGRIQA+R CF
Sbjct: 424 GSALIDMYAKCGRIQASRICF 444
Score = 103 bits (256), Expect = 2e-20
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Frame = +1
Query: 7 RVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHG 186
RVF++ + ++ S +AL+ ++R G +DEA +F + GV+ +++SW MIA + G
Sbjct: 170 RVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229
Query: 187 KDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGS 366
S+A+ +F +M G +P+ TI +LPA G++ L+ G +HG+ I++G+ D V S
Sbjct: 230 LYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSS 289
Query: 367 ALIDMYANCGRIQAARRCFGSMTRI---SCDVYV 459
ALIDMY C + F M + SC+ ++
Sbjct: 290 ALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFI 323
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +1
Query: 133 ELDVVSWTSMIASCSQHGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKA 312
E +V S++++I + S+ + AL F +M T G+ P+ +P + AC ++AL +
Sbjct: 76 EPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135
Query: 313 VHGFSIRRGISCDVYVGSALIDMYANCGRIQAARRCFGSM 432
VHG + G D +V S+L+ MY C +I+ A R F M
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM 175
Score = 54.7 bits (130), Expect = 8e-06
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Frame = +1
Query: 28 DMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHGKDSKALE 207
D+ +GS ALI +++ G I + F + ++V W ++IA + HGK +A+E
Sbjct: 420 DVYVGS--ALIDMYAKCGRIQASRICFDGIPTK----NLVCWNAVIAGYAMHGKAKEAME 473
Query: 208 LFREMQTAGVKPNAITIPCLLPACGNIAALMHGK-AVHGFSIRRGISCDVYVGSALIDMY 384
+F MQ +G KP+ I+ C+L AC G + S + GI V + ++ +
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533
Query: 385 ANCGRIQAA 411
+ G+++ A
Sbjct: 534 SRAGKLEQA 542
>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 213 bits (542), Expect = 1e-53
Identities = 101/141 (71%), Positives = 121/141 (85%)
Frame = +1
Query: 1 MLRVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQ 180
M +VF++ M++GSCNA I G SRNG ++ +L +F++ K QG+EL+VVSWTSMIA CSQ
Sbjct: 304 MSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQ 363
Query: 181 HGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYV 360
+G+D +ALELFREMQ AGVKPN++TIPCLLPACGNIAALMHGKA H FS+RRGIS DVYV
Sbjct: 364 NGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYV 423
Query: 361 GSALIDMYANCGRIQAARRCF 423
GSALIDMYA CGRIQA+R CF
Sbjct: 424 GSALIDMYAKCGRIQASRICF 444
Score = 103 bits (256), Expect = 2e-20
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Frame = +1
Query: 7 RVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHG 186
RVF++ + ++ S +AL+ ++R G +DEA +F + GV+ +++SW MIA + G
Sbjct: 170 RVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229
Query: 187 KDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGS 366
S+A+ +F +M G +P+ TI +LPA G++ L+ G +HG+ I++G+ D V S
Sbjct: 230 LYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSS 289
Query: 367 ALIDMYANCGRIQAARRCFGSMTRI---SCDVYV 459
ALIDMY C + F M + SC+ ++
Sbjct: 290 ALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFI 323
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +1
Query: 133 ELDVVSWTSMIASCSQHGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKA 312
E +V S++++I + S+ + AL F +M T G+ P+ +P + AC ++AL +
Sbjct: 76 EPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135
Query: 313 VHGFSIRRGISCDVYVGSALIDMYANCGRIQAARRCFGSM 432
VHG + G D +V S+L+ MY C +I+ A R F M
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM 175
Score = 54.7 bits (130), Expect = 8e-06
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Frame = +1
Query: 28 DMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHGKDSKALE 207
D+ +GS ALI +++ G I + F + ++V W ++IA + HGK +A+E
Sbjct: 420 DVYVGS--ALIDMYAKCGRIQASRICFDGIPTK----NLVCWNAVIAGYAMHGKAKEAME 473
Query: 208 LFREMQTAGVKPNAITIPCLLPACGNIAALMHGK-AVHGFSIRRGISCDVYVGSALIDMY 384
+F MQ +G KP+ I+ C+L AC G + S + GI V + ++ +
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533
Query: 385 ANCGRIQAA 411
+ G+++ A
Sbjct: 534 SRAGKLEQA 542
>ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 212 bits (540), Expect = 2e-53
Identities = 101/148 (68%), Positives = 124/148 (83%)
Frame = +1
Query: 1 MLRVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQ 180
M RVF++ +ME+GS NA +TG SRNG++D AL VF KFK Q +EL+VV+WTS+IASCSQ
Sbjct: 294 MSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQ 353
Query: 181 HGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYV 360
+GKD +ALELFR+MQ GV+PNA+TIP L+PACGNI+ALMHGK +H FS+RRGI DVYV
Sbjct: 354 NGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYV 413
Query: 361 GSALIDMYANCGRIQAARRCFGSMTRIS 444
GSALIDMYA CGRIQ ARRCF M+ ++
Sbjct: 414 GSALIDMYAKCGRIQLARRCFDKMSALN 441
Score = 105 bits (263), Expect = 3e-21
Identities = 50/139 (35%), Positives = 86/139 (61%)
Frame = +1
Query: 7 RVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHG 186
++F++ D ++ +A+I G+SR GL++EA +F + + GVE ++VSW M+A +G
Sbjct: 160 KLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNG 219
Query: 187 KDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGS 366
+A+ +FR M G P+ T+ C+LPA G + ++ G VHG+ I++G+ D +V S
Sbjct: 220 FYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVS 279
Query: 367 ALIDMYANCGRIQAARRCF 423
A++DMY CG ++ R F
Sbjct: 280 AMLDMYGKCGCVKEMSRVF 298
Score = 56.6 bits (135), Expect = 2e-06
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +1
Query: 28 DMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHGKDSKALE 207
D+ +GS ALI +++ G I A F K L++VSW +++ + HGK + +E
Sbjct: 410 DVYVGS--ALIDMYAKCGRIQLARRCFDKMSA----LNLVSWNAVMKGYAMHGKAKETME 463
Query: 208 LFREMQTAGVKPNAITIPCLLPACGNIAALMHG-KAVHGFSIRRGISCDVYVGSALIDMY 384
+F M +G KP+ +T C+L AC G + + S GI + + L+ +
Sbjct: 464 MFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLL 523
Query: 385 ANCGRIQAA 411
+ G+++ A
Sbjct: 524 SRVGKLEEA 532
>ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|222843699|gb|EEE81246.1|
predicted protein [Populus trichocarpa]
Length = 716
Score = 209 bits (531), Expect = 2e-52
Identities = 101/144 (70%), Positives = 121/144 (84%)
Frame = +1
Query: 1 MLRVFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQ 180
M VF + ++++G+CNAL+TG SRNGL+D AL VFK+FKG ++L+VVSWTSMIASCSQ
Sbjct: 264 MSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKG--MDLNVVSWTSMIASCSQ 321
Query: 181 HGKDSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYV 360
+GKD +ALELFREMQ GVKPN++TIPCLLPACGNIAAL+HGKA H FS+R GI DVYV
Sbjct: 322 NGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYV 381
Query: 361 GSALIDMYANCGRIQAARRCFGSM 432
GSALIDMYA CGR+ A+R CF M
Sbjct: 382 GSALIDMYAKCGRMLASRLCFDMM 405
Score = 90.1 bits (222), Expect = 2e-16
Identities = 47/144 (32%), Positives = 80/144 (55%)
Frame = +1
Query: 10 VFEKKGDMELGSCNALITGFSRNGLIDEALSVFKKFKGQGVELDVVSWTSMIASCSQHGK 189
VF+K + + +ALI+ F+R G + E +F + + GVEL++VSW MI+ ++ G
Sbjct: 131 VFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGS 190
Query: 190 DSKALELFREMQTAGVKPNAITIPCLLPACGNIAALMHGKAVHGFSIRRGISCDVYVGSA 369
A+ +F+ M G+KP+ ++ +LPA G++ + G +H + I++G+ D +V SA
Sbjct: 191 YLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSA 250
Query: 370 LIDMYANCGRIQAARRCFGSMTRI 441
LIDMY C F M +
Sbjct: 251 LIDMYGKCACASEMSGVFNEMDEV 274