BLASTX nr result
ID: Bupleurum21_contig00035851
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00035851
(304 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arab... 134 1e-29
ref|XP_002531422.1| pentatricopeptide repeat-containing protein,... 130 8e-29
ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containi... 128 4e-28
emb|CBI24389.3| unnamed protein product [Vitis vinifera] 128 4e-28
gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich p... 122 4e-26
>ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata] gi|297337605|gb|EFH68022.1| hypothetical protein
ARALYDRAFT_314676 [Arabidopsis lyrata subsp. lyrata]
Length = 828
Score = 134 bits (336), Expect = 1e-29
Identities = 64/100 (64%), Positives = 78/100 (78%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
+ RDPV+SNVL+S Y R+GK +EAV+VFEGM K VVS+S M+DGYC+ GRI +AR LF
Sbjct: 172 VKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLF 231
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+MPERNV+TWT+MI GY KAG FEDGF F+ MR E V
Sbjct: 232 DRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Score = 73.6 bits (179), Expect = 2e-11
Identities = 36/94 (38%), Positives = 59/94 (62%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
M +D VS N LI+ + ++ EA ++FE M K++VSW+ M+ G+ +G IS+ ELF
Sbjct: 336 MKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELF 395
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHM 283
MPE++ +TWT+MI ++ G +E+ +F M
Sbjct: 396 GMMPEKDDITWTAMISAFVSNGYYEEALCWFHKM 429
Score = 69.3 bits (168), Expect = 3e-10
Identities = 35/91 (38%), Positives = 53/91 (58%)
Frame = +2
Query: 29 NVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVV 208
N LIS+Y ++G + EA VF M K+ VSW+ ++ G + +ISEA ELF +MP +++V
Sbjct: 314 NSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMV 373
Query: 209 TWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+WT MI G+ G F M +D +
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEKDDI 404
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREG-RISEAREL 178
MS R VS N +IS Y GK+ +A QVF+ M + S++ M+ + + +A EL
Sbjct: 76 MSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATTSYNAMITAMIKNKCDLGKAYEL 135
Query: 179 FSQMPERNVVTWTSMIHGYLKAGSFED 259
F +PE+N V++ +MI G+++AG F++
Sbjct: 136 FCDIPEKNAVSYATMITGFVRAGRFDE 162
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 29 NVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVV 208
N IS R G L EA +F M +++VSW+ M+ Y G++S+A ++F +MP R
Sbjct: 54 NSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATT 113
Query: 209 TWTSMIHGYLK 241
++ +MI +K
Sbjct: 114 SYNAMITAMIK 124
>ref|XP_002531422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528972|gb|EEF30964.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 619
Score = 130 bits (328), Expect = 8e-29
Identities = 60/92 (65%), Positives = 76/92 (82%)
Frame = +2
Query: 11 RDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQM 190
R+PV SN +IS Y ++G+L+EA++VFEG VEK+VVSWS M+DGYC++GRI EARELF+ M
Sbjct: 120 REPVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVVSWSSMVDGYCKKGRIFEARELFNMM 179
Query: 191 PERNVVTWTSMIHGYLKAGSFEDGFRFFVHMR 286
P RNVVTWTSMI GY+ G FE+GF F+ MR
Sbjct: 180 PVRNVVTWTSMIDGYMNVGFFENGFSLFLSMR 211
Score = 79.0 bits (193), Expect = 4e-13
Identities = 36/94 (38%), Positives = 63/94 (67%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
M+ +D VS N LIS Y + +++EA ++FE + K+VVSW+ M+ G+ +G + + +LF
Sbjct: 279 MNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTMITGFSAKGNVQKGIQLF 338
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHM 283
MPE++ V WT++I G++ G +E+ F +F+ M
Sbjct: 339 KIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEM 372
Score = 76.6 bits (187), Expect = 2e-12
Identities = 35/91 (38%), Positives = 59/91 (64%)
Frame = +2
Query: 29 NVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVV 208
N +I++Y G +DEA ++F+ M K+VVSW+ ++ GY + I EA +LF ++P ++VV
Sbjct: 257 NSIIAMYCEFGCMDEAKRMFQMMNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVV 316
Query: 209 TWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+WT+MI G+ G+ + G + F M +D V
Sbjct: 317 SWTTMITGFSAKGNVQKGIQLFKIMPEKDDV 347
Score = 65.1 bits (157), Expect = 6e-09
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +2
Query: 35 LISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVVTW 214
+I+ +G G ++E+ +F M KNV++ + ML Y + G+I++A++LF +MPER T+
Sbjct: 1 MINKHGNNGNIEESESIFNRMPHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTATY 60
Query: 215 TSMIHGYLKAGSF-EDGFRFFVHMRHEDSV 301
+MI Y++ ++ F F M ++V
Sbjct: 61 NAMITAYIRNSCMVDEAFSLFSRMSERNAV 90
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREG-RISEAREL 178
M ++ ++ +++ Y + G++ +A ++F+ M E+ +++ M+ Y R + EA L
Sbjct: 21 MPHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTATYNAMITAYIRNSCMVDEAFSL 80
Query: 179 FSQMPERNVVTWTSMIHGYLKAGSFE 256
FS+M ERN V++ +MI G+LKAG FE
Sbjct: 81 FSRMSERNAVSYGAMITGFLKAGMFE 106
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMG-KLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEAREL 178
M R + N +I+ Y R +DEA +F M E+N VS+ M+ G+ + G +A L
Sbjct: 52 MPERTTATYNAMITAYIRNSCMVDEAFSLFSRMSERNAVSYGAMITGFLKAGMFEKAENL 111
Query: 179 FSQMPE--RNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+ ++P R V +MI GYLK G E+ + F +D V
Sbjct: 112 YREIPAKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVV 154
>ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 128 bits (322), Expect = 4e-28
Identities = 58/98 (59%), Positives = 78/98 (79%)
Frame = +2
Query: 11 RDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQM 190
RDPV SN LIS Y ++G+L+EA ++FEGM E++V+SWS M+DGYC++G+I ARELF +M
Sbjct: 236 RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 295
Query: 191 PERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSVE 304
PERNVVTWT+MI G++K G +E GF F+ MR E V+
Sbjct: 296 PERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVK 333
Score = 73.9 bits (180), Expect = 1e-11
Identities = 31/94 (32%), Positives = 62/94 (65%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
M+ +D VS N LI+ Y + +++E +FE +K+V+SW+ M+ G+ +G++ ++ ELF
Sbjct: 397 MNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELF 456
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHM 283
MP+++ + WT++I G++ G +E+ +F+ M
Sbjct: 457 RMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEM 490
Score = 67.4 bits (163), Expect = 1e-09
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +2
Query: 38 ISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVVTWT 217
I+ +GR G L EA +F M KN +SW+ ML Y G I++AR++F +MP+R ++
Sbjct: 117 ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYN 176
Query: 218 SMIHGYLKAGSFEDG--FRFFVHMRHEDSV 301
+MI Y ++ G + F MR +S+
Sbjct: 177 AMITAYTRSNPMMIGEASKLFAEMRERNSI 206
Score = 62.4 bits (150), Expect = 4e-08
Identities = 29/96 (30%), Positives = 51/96 (53%)
Frame = +2
Query: 14 DPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMP 193
D N +I +Y R + EA ++F+ M K+VVSW+ ++ GY + + E LF +
Sbjct: 370 DVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQ 429
Query: 194 ERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+++V++WT+MI G+ G F M +D +
Sbjct: 430 QKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDI 465
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKL--DEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARE 175
M R S N +I+ Y R + EA ++F M E+N +S++ M+ G R G + A E
Sbjct: 167 MPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEE 226
Query: 176 LFSQMPE--RNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
L+ + P R+ V ++I GYLK G E+ R F M D +
Sbjct: 227 LYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVI 270
>emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 128 bits (322), Expect = 4e-28
Identities = 58/98 (59%), Positives = 78/98 (79%)
Frame = +2
Query: 11 RDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQM 190
RDPV SN LIS Y ++G+L+EA ++FEGM E++V+SWS M+DGYC++G+I ARELF +M
Sbjct: 157 RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 216
Query: 191 PERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSVE 304
PERNVVTWT+MI G++K G +E GF F+ MR E V+
Sbjct: 217 PERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVK 254
Score = 73.9 bits (180), Expect = 1e-11
Identities = 31/94 (32%), Positives = 62/94 (65%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
M+ +D VS N LI+ Y + +++E +FE +K+V+SW+ M+ G+ +G++ ++ ELF
Sbjct: 318 MNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELF 377
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHM 283
MP+++ + WT++I G++ G +E+ +F+ M
Sbjct: 378 RMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEM 411
Score = 67.4 bits (163), Expect = 1e-09
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +2
Query: 38 ISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVVTWT 217
I+ +GR G L EA +F M KN +SW+ ML Y G I++AR++F +MP+R ++
Sbjct: 38 ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYN 97
Query: 218 SMIHGYLKAGSFEDG--FRFFVHMRHEDSV 301
+MI Y ++ G + F MR +S+
Sbjct: 98 AMITAYTRSNPMMIGEASKLFAEMRERNSI 127
Score = 62.4 bits (150), Expect = 4e-08
Identities = 29/96 (30%), Positives = 51/96 (53%)
Frame = +2
Query: 14 DPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMP 193
D N +I +Y R + EA ++F+ M K+VVSW+ ++ GY + + E LF +
Sbjct: 291 DVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQ 350
Query: 194 ERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+++V++WT+MI G+ G F M +D +
Sbjct: 351 QKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDI 386
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKL--DEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARE 175
M R S N +I+ Y R + EA ++F M E+N +S++ M+ G R G + A E
Sbjct: 88 MPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEE 147
Query: 176 LFSQMPE--RNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
L+ + P R+ V ++I GYLK G E+ R F M D +
Sbjct: 148 LYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVI 191
>gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
gb|AF151215 and contains multiple PPR PF|01535 repeats
[Arabidopsis thaliana]
Length = 816
Score = 122 bits (305), Expect = 4e-26
Identities = 60/101 (59%), Positives = 74/101 (73%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
+ RD V+SNVL+S Y R GK +EAV+VF+GM K VVS S M+ GYC+ GRI +AR LF
Sbjct: 172 VKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLF 231
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHEDSVE 304
+M ERNV+TWT+MI GY KAG FEDGF F+ MR E V+
Sbjct: 232 DRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVK 272
Score = 73.2 bits (178), Expect = 2e-11
Identities = 36/98 (36%), Positives = 61/98 (62%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELF 181
M +D VS N LI+ + ++ EA ++FE M K++VSW+ M+ G+ +G IS+ ELF
Sbjct: 336 MKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELF 395
Query: 182 SQMPERNVVTWTSMIHGYLKAGSFEDGFRFFVHMRHED 295
MPE++ +TWT+MI ++ G +E+ +F M ++
Sbjct: 396 GMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKE 433
Score = 69.3 bits (168), Expect = 3e-10
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = +2
Query: 29 NVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVV 208
N L+S+Y ++G + EA VF M K+ VSW+ ++ G + +ISEA ELF +MP +++V
Sbjct: 314 NSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMV 373
Query: 209 TWTSMIHGYLKAGSFEDGFRFFVHMRHEDSV 301
+WT MI G+ G F M +D++
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 MSLRDPVSSNVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREG-RISEAREL 178
MS R VS +IS Y GK+ +A QVF+ M + S++ M+ + + +A EL
Sbjct: 76 MSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYEL 135
Query: 179 FSQMPERNVVTWTSMIHGYLKAGSFED 259
F +PE+N V++ +MI G+++AG F++
Sbjct: 136 FCDIPEKNAVSYATMITGFVRAGRFDE 162
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 29 NVLISVYGRMGKLDEAVQVFEGMVEKNVVSWSCMLDGYCREGRISEARELFSQMPERNVV 208
N IS + R G L EA +F M +++VSW M+ Y G++S+A ++F +MP R
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 209 TWTSMIHGYLK 241
++ +MI +K
Sbjct: 114 SYNAMITAMIK 124