BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035850
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   166   4e-41
ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containi...   166   4e-41
ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
emb|CBI16090.3| unnamed protein product [Vitis vinifera]              170   1e-40
ref|XP_002520529.1| pentatricopeptide repeat-containing protein,...   160   2e-39

>ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  166 bits (420), Expect(2) = 4e-41
 Identities = 79/134 (58%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
 Frame = -1

Query: 436 SWNSLLAGCAHNGYGSQAVGLFEQMR-TMIKPDLTSYLAVLTACTHVGLLEKGLKYFDMM 260
           SWNSLL+GCA++G G +A+ LFE+MR T IKPD TS+LAVLTAC+HVGLL+KGL+YF +M
Sbjct: 440 SWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLM 499

Query: 259 INDDSLDQPKAEHYACIVNLYAKAGYIHEAESFIHSMLIKPGATVYKALLSACQLYGNKE 80
            N + ++ PK EHYA +V+L+ +AG ++EAE+FI S+ I+PG ++YKALLSAC ++GNK+
Sbjct: 500 RNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKD 559

Query: 79  IAMRNATSL*SFTP 38
           IA+R A  L    P
Sbjct: 560 IAIRTAKKLLELYP 573



 Score = 26.9 bits (58), Expect(2) = 4e-41
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 59  KLIELYPNDDATYSLVFN 6
           KL+ELYP D ATY ++ N
Sbjct: 567 KLLELYPYDPATYIMLSN 584


>ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  166 bits (420), Expect(2) = 4e-41
 Identities = 79/134 (58%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
 Frame = -1

Query: 436 SWNSLLAGCAHNGYGSQAVGLFEQMR-TMIKPDLTSYLAVLTACTHVGLLEKGLKYFDMM 260
           SWNSLL+GCA++G G +A+ LFE+MR T IKPD TS+LAVLTAC+HVGLL+KGL+YF +M
Sbjct: 440 SWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLM 499

Query: 259 INDDSLDQPKAEHYACIVNLYAKAGYIHEAESFIHSMLIKPGATVYKALLSACQLYGNKE 80
            N + ++ PK EHYA +V+L+ +AG ++EAE+FI S+ I+PG ++YKALLSAC ++GNK+
Sbjct: 500 RNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKD 559

Query: 79  IAMRNATSL*SFTP 38
           IA+R A  L    P
Sbjct: 560 IAIRTAKKLLELYP 573



 Score = 26.9 bits (58), Expect(2) = 4e-41
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 59  KLIELYPNDDATYSLVFN 6
           KL+ELYP D ATY ++ N
Sbjct: 567 KLLELYPYDPATYIMLSN 584


>ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  170 bits (430), Expect = 1e-40
 Identities = 82/134 (61%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
 Frame = -1

Query: 436 SWNSLLAGCAHNGYGSQAVGLFEQMRTM-IKPDLTSYLAVLTACTHVGLLEKGLKYFDMM 260
           SWNSLL+GCA++GYG +AV LFEQMR   +KPD T++L VL+AC HVGLL+KGL+YFD+M
Sbjct: 452 SWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLM 511

Query: 259 INDDSLDQPKAEHYACIVNLYAKAGYIHEAESFIHSMLIKPGATVYKALLSACQLYGNKE 80
            ND SL+ P  EHY+ +V+L+++AGY+ EAE FI++M I+PG +VYKALLSACQ++GN E
Sbjct: 512 RNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVE 571

Query: 79  IAMRNATSL*SFTP 38
           IA+R A  L    P
Sbjct: 572 IAVRCAKKLLQMCP 585


>emb|CBI16090.3| unnamed protein product [Vitis vinifera]
          Length = 458

 Score =  170 bits (430), Expect = 1e-40
 Identities = 82/134 (61%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
 Frame = -1

Query: 436 SWNSLLAGCAHNGYGSQAVGLFEQMRTM-IKPDLTSYLAVLTACTHVGLLEKGLKYFDMM 260
           SWNSLL+GCA++GYG +AV LFEQMR   +KPD T++L VL+AC HVGLL+KGL+YFD+M
Sbjct: 282 SWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLM 341

Query: 259 INDDSLDQPKAEHYACIVNLYAKAGYIHEAESFIHSMLIKPGATVYKALLSACQLYGNKE 80
            ND SL+ P  EHY+ +V+L+++AGY+ EAE FI++M I+PG +VYKALLSACQ++GN E
Sbjct: 342 RNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVE 401

Query: 79  IAMRNATSL*SFTP 38
           IA+R A  L    P
Sbjct: 402 IAVRCAKKLLQMCP 415


>ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540371|gb|EEF41942.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score =  160 bits (405), Expect(2) = 2e-39
 Identities = 76/134 (56%), Positives = 107/134 (79%), Gaps = 1/134 (0%)
 Frame = -1

Query: 436 SWNSLLAGCAHNGYGSQAVGLFEQMR-TMIKPDLTSYLAVLTACTHVGLLEKGLKYFDMM 260
           SWN+LL GCAH+G+G++AV LFEQMR T IKP+ T++LAVL+AC+HVG ++KGL+YFD M
Sbjct: 430 SWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSHVGSVDKGLEYFDFM 489

Query: 259 INDDSLDQPKAEHYACIVNLYAKAGYIHEAESFIHSMLIKPGATVYKALLSACQLYGNKE 80
            +D SL+  + EHYA +V+++ +AGY+ EAE+ I+ M + PG +VYKALLSAC ++GN+E
Sbjct: 490 RSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMDPGPSVYKALLSACLVHGNRE 549

Query: 79  IAMRNATSL*SFTP 38
           IA+R+A  L    P
Sbjct: 550 IAVRSARKLLELWP 563



 Score = 27.3 bits (59), Expect(2) = 2e-39
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 59  KLIELYPNDDATYSLVFNV 3
           KL+EL+P+D ATY L+ N+
Sbjct: 557 KLLELWPDDPATYILLSNM 575