BLASTX nr result

ID: Bupleurum21_contig00035618 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035618
         (512 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30347.3| unnamed protein product [Vitis vinifera]              234   7e-60
ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat...   234   7e-60
emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]   234   7e-60
ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat...   217   9e-55
ref|XP_002309408.1| predicted protein [Populus trichocarpa] gi|2...   216   2e-54

>emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  234 bits (596), Expect = 7e-60
 Identities = 108/147 (73%), Positives = 132/147 (89%)
 Frame = +3

Query: 3   ITPDNVAFTVILSACSHAGLVEEGCHFFKTMVDKYSIVPSADHYACIIDLLGRAGKLNTA 182
           +TPD+VAFTVIL+ACS AGLV+EGC++F++M   YSIVPS DHYAC++DLLGRAG+L  A
Sbjct: 414 LTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEA 473

Query: 183 YDLLKSMPVEPHAGAWGALLGACKLHSESELGKEVANQLFKLEPLNAGNYVALSNIYAAE 362
           Y+LLKSMPVEPHAGAWGALLGACKLH + ELG+ VA+QLF+LEP NAGNYV LSNIYAA 
Sbjct: 474 YELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 533

Query: 363 DRWMDVSLVRDKMYERGLRKVPGCTRI 443
           ++W+DVSL+R+KM ERG+RK+PGC+ I
Sbjct: 534 EQWLDVSLLRNKMRERGIRKIPGCSWI 560


>ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  234 bits (596), Expect = 7e-60
 Identities = 108/147 (73%), Positives = 132/147 (89%)
 Frame = +3

Query: 3   ITPDNVAFTVILSACSHAGLVEEGCHFFKTMVDKYSIVPSADHYACIIDLLGRAGKLNTA 182
           +TPD+VAFTVIL+ACS AGLV+EGC++F++M   YSIVPS DHYAC++DLLGRAG+L  A
Sbjct: 415 LTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEA 474

Query: 183 YDLLKSMPVEPHAGAWGALLGACKLHSESELGKEVANQLFKLEPLNAGNYVALSNIYAAE 362
           Y+LLKSMPVEPHAGAWGALLGACKLH + ELG+ VA+QLF+LEP NAGNYV LSNIYAA 
Sbjct: 475 YELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 534

Query: 363 DRWMDVSLVRDKMYERGLRKVPGCTRI 443
           ++W+DVSL+R+KM ERG+RK+PGC+ I
Sbjct: 535 EQWLDVSLLRNKMRERGIRKIPGCSWI 561


>emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  234 bits (596), Expect = 7e-60
 Identities = 108/147 (73%), Positives = 132/147 (89%)
 Frame = +3

Query: 3   ITPDNVAFTVILSACSHAGLVEEGCHFFKTMVDKYSIVPSADHYACIIDLLGRAGKLNTA 182
           +TPD+VAFTVIL+ACS AGLV+EGC++F++M   YSIVPS DHYAC++DLLGRAG+L  A
Sbjct: 400 LTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEA 459

Query: 183 YDLLKSMPVEPHAGAWGALLGACKLHSESELGKEVANQLFKLEPLNAGNYVALSNIYAAE 362
           Y+LLKSMPVEPHAGAWGALLGACKLH + ELG+ VA+QLF+LEP NAGNYV LSNIYAA 
Sbjct: 460 YELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 519

Query: 363 DRWMDVSLVRDKMYERGLRKVPGCTRI 443
           ++W+DVSL+R+KM ERG+RK+PGC+ I
Sbjct: 520 EQWLDVSLLRNKMRERGIRKIPGCSWI 546


>ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
           gi|449519310|ref|XP_004166678.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  217 bits (552), Expect = 9e-55
 Identities = 101/147 (68%), Positives = 127/147 (86%)
 Frame = +3

Query: 3   ITPDNVAFTVILSACSHAGLVEEGCHFFKTMVDKYSIVPSADHYACIIDLLGRAGKLNTA 182
           +TPD+VAFTVIL+ACS AGLV+EG H+F+ M  KYS+VPS DHYACI+DLL R+G+L  A
Sbjct: 419 LTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEA 478

Query: 183 YDLLKSMPVEPHAGAWGALLGACKLHSESELGKEVANQLFKLEPLNAGNYVALSNIYAAE 362
           Y+L+KS+PV+ HAGAWGALLGACKL+ +SEL + VA++L ++EP NAGNYV LSNIYAA 
Sbjct: 479 YELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAA 538

Query: 363 DRWMDVSLVRDKMYERGLRKVPGCTRI 443
           DRW+DVS VR++M ERGLRK+PGC+ I
Sbjct: 539 DRWLDVSAVRNQMNERGLRKIPGCSWI 565


>ref|XP_002309408.1| predicted protein [Populus trichocarpa] gi|222855384|gb|EEE92931.1|
           predicted protein [Populus trichocarpa]
          Length = 547

 Score =  216 bits (550), Expect = 2e-54
 Identities = 99/147 (67%), Positives = 125/147 (85%)
 Frame = +3

Query: 3   ITPDNVAFTVILSACSHAGLVEEGCHFFKTMVDKYSIVPSADHYACIIDLLGRAGKLNTA 182
           + PD VAFTVIL+ACS  GL+E+G HFF TM +KYS+VPS +HYAC++DLL RAG+L  A
Sbjct: 397 LIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAA 456

Query: 183 YDLLKSMPVEPHAGAWGALLGACKLHSESELGKEVANQLFKLEPLNAGNYVALSNIYAAE 362
           YDLLKSMP++PHA AWGALLGACKLH + EL +EVAN+L +LEP  AG+YV LSNIYA+ 
Sbjct: 457 YDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASA 516

Query: 363 DRWMDVSLVRDKMYERGLRKVPGCTRI 443
           ++W+DVS+VRD+M ERG+RK+PGC+ I
Sbjct: 517 NQWLDVSIVRDEMKERGIRKIPGCSYI 543


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