BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035613
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   105   8e-21
ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...    87   2e-15
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    85   1e-14
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    85   1e-14
ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus c...    83   4e-14

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  105 bits (261), Expect = 8e-21
 Identities = 60/182 (32%), Positives = 89/182 (48%)
 Frame = +1

Query: 49   DINNFSDWLKAVFNQYKGMDVQRMVMMCWAVWKCRNNLVWNQRGMEVAEVVVLAKSSLNQ 228
            +  +F DWL  +F     +   + + +CW +W  RN++VWN R     +VV    + L  
Sbjct: 584  NFGSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLES 643

Query: 229  WLSAQNKLFDTSLGYLTQVDGDERWKVPDDSTIKINTDAAIFEASKCFSYSRVARNHAGE 408
            W  A   L       +T      +W+ PD   IKIN D A+F          V R+H G 
Sbjct: 644  WFHANETLATA----VTVPSYSSKWQKPDYGWIKINVDGAVFPDKGAIG--AVFRDHQGR 697

Query: 409  LVEAFSKCIQGSVNPEMAEAIGIREALSWTKKKEWSNVVVETDCLVAVQAIRSSTALLSY 588
             +  F+K       P++ EA+G+RE LSW  ++  S +VVETDCL  VQAI+  +   + 
Sbjct: 698  FMGGFAKPFPHQTLPKVVEALGVREVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTS 757

Query: 589  FG 594
            FG
Sbjct: 758  FG 759


>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
           gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
           [Medicago truncatula]
          Length = 547

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
 Frame = +1

Query: 124 MMCWAVWKCRNNLVWNQRGMEVAEVVVLAKSSLNQWLSAQNKLFDTSLGYLTQVDGDER- 300
           MM W +W+ RN+ VW+ +       V LA+  L QW +A+N          TQV    + 
Sbjct: 1   MMLWCIWRRRNDKVWDGQLQPSNIAVQLARELLFQWQAARNSA-------TTQVQQSPQD 53

Query: 301 ---WKVPDDSTIKINTDAAIFEASKCFSYSRVARNHAGELVEAFSKCIQGSVNPEMAEAI 471
              W+ P    +K N DAAIF     F      R+  G  ++A +   +G   P+ AEA+
Sbjct: 54  TIAWQPPAAGFLKCNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQEAEAV 113

Query: 472 GIREALSWTKKKEWSNVVVETDCLVAVQAIRSSTALLSYFG 594
           G+R+A+ W  + E SNV +E DC + V +I       + FG
Sbjct: 114 GLRDAILWLGQLELSNVQLELDCKLVVDSIYDKNNNQAEFG 154


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
 Frame = +1

Query: 55   NNFSDWLKAVFNQYKGMDVQRMVMMC---WAVWKCRNNLVWNQRGMEVAEVVVLAKSSLN 225
            N FS   + +F+  K        ++    W +W+ RNN   N   +    VV+   S ++
Sbjct: 1141 NGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVD 1200

Query: 226  QWLSAQNKLFDTSLGYLTQVDGDERWKVPDDSTIKINTDAAIFEASKCFSYSRVARNHAG 405
              L    K  D   G  TQ     RW+ P  S   IN+DAAIF +S+      + R++ G
Sbjct: 1201 MILKHNTKTVDGQRGGNTQAI--PRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTG 1258

Query: 406  ELVEAFSKCIQGSVNPEMAEAIGIREALSWTKKKEWSNVVVETDCLVAVQAIRSS 570
            + + A S+ I   V PE+AEA+ IR AL   K++   ++V+ +DCL  ++ I++S
Sbjct: 1259 KCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTS 1313


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
 Frame = +1

Query: 55   NNFSDWLKAVFNQYKGMDVQRMVMMC---WAVWKCRNNLVWNQRGMEVAEVVVLAKSSLN 225
            N FS   + +F+  K        ++    W +W+ RNN   N   +    VV+   S ++
Sbjct: 1098 NGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVD 1157

Query: 226  QWLSAQNKLFDTSLGYLTQVDGDERWKVPDDSTIKINTDAAIFEASKCFSYSRVARNHAG 405
              L    K  D   G  TQ     RW+ P  S   IN+DAAIF +S+      + R++ G
Sbjct: 1158 MILKHNTKTVDGQRGGNTQAI--PRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTG 1215

Query: 406  ELVEAFSKCIQGSVNPEMAEAIGIREALSWTKKKEWSNVVVETDCLVAVQAIRSS 570
            + + A S+ I   V PE+AEA+ IR AL   K++   ++V+ +DCL  ++ I++S
Sbjct: 1216 KCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTS 1270


>ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus communis]
           gi|223534693|gb|EEF36385.1| hypothetical protein
           RCOM_0596960 [Ricinus communis]
          Length = 270

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
 Frame = +1

Query: 67  DWLKAVFNQYKGMDVQRMVMMCWAVWKCRNNLVWNQRGMEVAEVVVLAKSSLNQWLSAQ- 243
           DWL+ +F ++       +  + W +W  RN +VWN +  +  ++V  A + L +WL AQ 
Sbjct: 124 DWLQEIFTKFDKSTWHCIAAIVWNLWIHRNEVVWNSKRKQPRQIVDGAVTYLQRWLIAQQ 183

Query: 244 --------NKLFDTSLGYLTQVDGDERWKVPDDSTIKINTDAAIFEASKCFSYSRVARNH 399
                   N++F+ +L          +WK P   ++K N DA+ F          V RN 
Sbjct: 184 TNPPSPDNNEVFNHNLA---------KWKKPKSGSLKCNVDASTFNQQGMIGAGYVLRNT 234

Query: 400 AGELVEA-FSKCIQGSVNPEMAEAIGIREALSWTK 501
            G L+ A  +  +Q  +N ++AEA+  REALSWTK
Sbjct: 235 EGALLGARITSFVQSDLNLKLAEALSFREALSWTK 269