BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00033789
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ...   132   2e-29
ref|XP_002867196.1| pentatricopeptide repeat-containing protein ...   123   1e-26
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   120   9e-26
ref|NP_195043.1| pentatricopeptide repeat-containing protein [Ar...   116   2e-24
ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24

>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355517031|gb|AES98654.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  132 bits (333), Expect = 2e-29
 Identities = 63/133 (47%), Positives = 79/133 (59%)
 Frame = -1

Query: 440  KSIGECWVEIRNTVHHFVIDDKCQPNIEVLQSWTKGVEGDVKPPDMNDRLCLREEEDEKV 261
            K IG+ W+E  N VH FV+ D+  P ++ L SW K V  +VK    ++ L + EEE E  
Sbjct: 755  KPIGQSWIERNNVVHTFVVGDQSNPYLDKLHSWLKRVAVNVKTHVSDNELYIEEEEKENT 814

Query: 260  GGIHSEKXXXXXXXXXXAPTCQPIRILKSLRMCEDCHATIKYVSKAYDREIYVCDSNYLH 81
              +HSEK              Q +RI+K LRMC DCH T KY+S AY  EIY+ DSN LH
Sbjct: 815  SSVHSEKLAFAFALIDPHNKPQILRIVKKLRMCRDCHDTAKYISMAYGCEIYLSDSNCLH 874

Query: 80   HFKDGYCSCGDYW 42
            HFK G+CSC DYW
Sbjct: 875  HFKGGHCSCRDYW 887


>ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313032|gb|EFH43455.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 997

 Score =  123 bits (309), Expect = 1e-26
 Identities = 63/150 (42%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
 Frame = -1

Query: 473  ITKTQMSD-KAKKSIGECWVEIRNTVHHFVIDDKCQPNIEVLQSWTKGVEGDVKP----P 309
            + +T M   K KK  G  W+E++N +H FV+DD+  P  E++    K +  D+K     P
Sbjct: 849  LARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVP 908

Query: 308  DMNDRLC-LREEEDEKVGGIHSEKXXXXXXXXXXAPTCQPIRILKSLRMCEDCHATIKYV 132
            + +  L  + EEE E+    HSEK           P+  PIR++K+LR+C DCH  +KY+
Sbjct: 909  ETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST-PIRVIKNLRVCGDCHNAMKYI 967

Query: 131  SKAYDREIYVCDSNYLHHFKDGYCSCGDYW 42
            SK YDREI + D+N  H FKDG CSCGDYW
Sbjct: 968  SKVYDREIVLRDANRFHRFKDGICSCGDYW 997


>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
            [Vitis vinifera]
          Length = 1545

 Score =  120 bits (302), Expect = 9e-26
 Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
 Frame = -1

Query: 473  ITKTQMSDKAKKSIGECWVEIRNTVHHFVIDDKCQPNIEVLQSWTKGVEGDVKPPDMNDR 294
            + K++   + K+ +G  W+E +N VH FV DD+ +P  + L SW + V   VK PD +DR
Sbjct: 753  LRKSEKRSETKQPLGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIENVARKVKAPDQHDR 812

Query: 293  LCLREEEDEKVGGIHSEKXXXXXXXXXXAPTCQP--IRILKSLRMCEDCHATIKYVSKAY 120
            L + EEE E++GG+HSEK           P+C P  +RI+K+LRMC DCH T K++S  Y
Sbjct: 813  LFIEEEEKEEIGGVHSEK--LALAFALIDPSCAPRSVRIVKNLRMCGDCHGTAKFLSMLY 870

Query: 119  DREIYVCDSNYLH 81
              EIY+ DS  LH
Sbjct: 871  SCEIYLSDSKCLH 883


>ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g33170 gi|4455331|emb|CAB36791.1| putative protein
            [Arabidopsis thaliana] gi|7270265|emb|CAB80034.1|
            putative protein [Arabidopsis thaliana]
            gi|332660786|gb|AEE86186.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  116 bits (291), Expect = 2e-24
 Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
 Frame = -1

Query: 473  ITKTQMSD-KAKKSIGECWVEIRNTVHHFVIDDKCQPNIEVLQSWTKGVEGDVKP----P 309
            + +T M   K KK  G  W+E++N +H FV+DD+     E++    K +  D+K     P
Sbjct: 842  LARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVP 901

Query: 308  DMNDRLC-LREEEDEKVGGIHSEKXXXXXXXXXXAPTCQPIRILKSLRMCEDCHATIKYV 132
            + +  L  + EEE E+    HSEK           P+  PIR++K+LR+C DCH  +KY+
Sbjct: 902  ETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST-PIRVIKNLRVCGDCHNAMKYI 960

Query: 131  SKAYDREIYVCDSNYLHHFKDGYCSCGDYW 42
            +K Y+REI + D+N  H FKDG CSCGDYW
Sbjct: 961  AKVYNREIVLRDANRFHRFKDGICSCGDYW 990


>ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  115 bits (287), Expect = 5e-24
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
 Frame = -1

Query: 476 NITKTQMSDKAKKSIGECWVEIRNTVHHFVIDDKCQPNIEVLQSWTKGVEGDVKP----P 309
           ++ K     K KK  G  W+E++N +H F + DK  P    + S+ + +  ++K     P
Sbjct: 509 DVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVP 568

Query: 308 DMNDRLCLREEEDEKVGGIHSEKXXXXXXXXXXAPTCQPIRILKSLRMCEDCHATIKYVS 129
           D++  L   + ED++   +H  +           P   PIR++K+LR+C DCH  IKY+S
Sbjct: 569 DIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYIS 628

Query: 128 KAYDREIYVCDSNYLHHFKDGYCSCGDYW 42
           +  +REI V DS+  HHFK+G CSCGDYW
Sbjct: 629 EISNREIIVRDSSRFHHFKNGRCSCGDYW 657