BLASTX nr result
ID: Bupleurum21_contig00033713
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00033713
(380 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002310258.1| predicted protein [Populus trichocarpa] gi|2... 181 5e-44
ref|XP_002522430.1| pentatricopeptide repeat-containing protein,... 174 9e-42
ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat... 170 1e-40
ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatul... 169 2e-40
ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat... 169 3e-40
>ref|XP_002310258.1| predicted protein [Populus trichocarpa] gi|222853161|gb|EEE90708.1|
predicted protein [Populus trichocarpa]
Length = 666
Score = 181 bits (459), Expect = 5e-44
Identities = 90/125 (72%), Positives = 101/125 (80%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
LFD M RDEISWT IISGYV+ ++ EAL+LFSKMWVEP L +D F LSLALKAC LNM
Sbjct: 23 LFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNM 82
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+V GE LHGY VKT+FV+SVFVGSALVDMY K+GK+ EGC VF M RNVVSWTA+I
Sbjct: 83 SVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIA 142
Query: 366 GLVRA 380
GLVRA
Sbjct: 143 GLVRA 147
Score = 95.9 bits (237), Expect = 3e-18
Identities = 51/124 (41%), Positives = 74/124 (59%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F +M LR+ +SWT II+G V A + EAL FS MW++ + D++ S ALKACA +
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQK-VGCDTYTFSSALKACADSG 183
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ G +H +K F FV + L MY K GK+ G R+F++M R+VVSWT +I
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243
Query: 366 GLVR 377
V+
Sbjct: 244 SNVQ 247
Score = 77.0 bits (188), Expect = 1e-12
Identities = 44/121 (36%), Positives = 63/121 (52%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F +S RD ISW+ +ISGY EA S M E R + FA + L C
Sbjct: 327 VFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGP-RPNEFAFASVLSVCGNMA 385
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ G+ LH + + + V SAL++MY+K G I E ++FD N+VSWTA+I
Sbjct: 386 ILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMIN 445
Query: 366 G 368
G
Sbjct: 446 G 446
Score = 72.8 bits (177), Expect = 3e-11
Identities = 36/121 (29%), Positives = 65/121 (53%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
LF+ M+ RD +SWT II V A+ F +M E + + F + + CA
Sbjct: 226 LFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMR-ETDVSPNEFTFAAVISGCATLG 284
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ GE LH + ++ VDS+ V ++++ MY+K ++ VF + R+++SW+ +I+
Sbjct: 285 RIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMIS 344
Query: 366 G 368
G
Sbjct: 345 G 345
>ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538315|gb|EEF39922.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 556
Score = 174 bits (440), Expect = 9e-42
Identities = 86/125 (68%), Positives = 99/125 (79%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+FD+M RDEISWT IISGYV+A D+ EALTLFSKMWV P LR+D F LSLALK C L++
Sbjct: 70 MFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGLRMDPFILSLALKICGLSL 129
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
N GE LHGY VK++FVDSVFVGSALVDMY K KI +GC++F M RNVVSWTA+IT
Sbjct: 130 NESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIIT 189
Query: 366 GLVRA 380
G V A
Sbjct: 190 GFVHA 194
Score = 99.8 bits (247), Expect = 2e-19
Identities = 52/120 (43%), Positives = 72/120 (60%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F M +R+ +SWT II+G+VHA S E L FS+MW + DS+ ++ALKACA
Sbjct: 172 IFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVV-CDSYTFAIALKACANLG 230
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ G +H +K + S FV + L MY K GK+ G R+F+ M RNVVSWT +IT
Sbjct: 231 ALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIIT 290
Score = 74.3 bits (181), Expect = 9e-12
Identities = 38/121 (31%), Positives = 65/121 (53%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F +++ RD +SW+ II+GY + EA S+M E + + L+ L C
Sbjct: 374 VFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGP-KPNELTLASVLSVCGNMA 432
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ G+ LH + + + + SAL++MY+K G I E ++FD ++VSWTA+I
Sbjct: 433 ILEQGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMIN 492
Query: 366 G 368
G
Sbjct: 493 G 493
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/121 (29%), Positives = 65/121 (53%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
LF+ M++R+ +SWT II+ Y + AL F +M E + + F + + CA
Sbjct: 273 LFEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQ-EIGVSPNDFTFAAVISGCANLG 331
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ GE LHG+ + + + V ++++ +Y+K G++ VF + R+VVSW+ +I
Sbjct: 332 KTEWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIA 391
Query: 366 G 368
G
Sbjct: 392 G 392
>ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 170 bits (430), Expect = 1e-40
Identities = 81/126 (64%), Positives = 100/126 (79%)
Frame = +3
Query: 3 HLFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALN 182
++FD M+ RDEISWT +I+GYV+ASDS EAL LFS MWV P + D F +S+ALKACAL
Sbjct: 78 YMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALG 137
Query: 183 MNVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVI 362
+N+ GE LHG+ VK+ + SVFV SAL+DMY KVGKI +GCRVF+ M+TRNVVSWTA+I
Sbjct: 138 VNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAII 197
Query: 363 TGLVRA 380
GLV A
Sbjct: 198 AGLVHA 203
Score = 85.9 bits (211), Expect = 3e-15
Identities = 48/124 (38%), Positives = 72/124 (58%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F+ M R+ +SWT II+G VHA ++E L FS+MW + DS ++ALKA A +
Sbjct: 181 VFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMW-RSKVGYDSHTFAIALKASADSS 239
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ G+ +H +K F +S FV + L MY K GK R+F+ M +VVSWT +I+
Sbjct: 240 LLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIS 299
Query: 366 GLVR 377
V+
Sbjct: 300 TYVQ 303
Score = 69.3 bits (168), Expect = 3e-10
Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKM---WVEPTLRIDSFALSLALKACA 176
LF+ M + D +SWT +IS YV + A+ F +M +V P + + + + +CA
Sbjct: 282 LFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSP----NKYTFAAVISSCA 337
Query: 177 LNMNVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTA 356
+ GE +HG+ ++ V+++ V ++++ +Y+K G + VF + ++++SW+
Sbjct: 338 NLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWST 397
Query: 357 VIT 365
+I+
Sbjct: 398 IIS 400
Score = 67.8 bits (164), Expect = 9e-10
Identities = 38/121 (31%), Positives = 63/121 (52%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F ++ +D ISW+ IIS Y + EA S M E + + FALS L C
Sbjct: 383 VFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGP-KPNEFALSSVLSVCGSMA 441
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ G+ +H + + V SA++ MY+K G + E ++F+ M +++SWTA+I
Sbjct: 442 LLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMIN 501
Query: 366 G 368
G
Sbjct: 502 G 502
>ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2
[Medicago truncatula]
Length = 1033
Score = 169 bits (428), Expect = 2e-40
Identities = 83/125 (66%), Positives = 100/125 (80%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F+ MS RDEISWTN+I+GYV+A++S EAL LFS MWV+ L+ D F +S+ALKACAL M
Sbjct: 106 MFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGM 165
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
NV GE LHG+ VK+ ++SVFV SALVDMY KVGK +GC VF+NM TRNVVSWTAVI
Sbjct: 166 NVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIV 225
Query: 366 GLVRA 380
GLV A
Sbjct: 226 GLVHA 230
Score = 82.8 bits (203), Expect = 3e-14
Identities = 46/124 (37%), Positives = 73/124 (58%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F++M+ R+ +SWT +I G VHA SL+ L+ FS+MW + DS ++ALKA A +
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMW-RSKVGYDSHTFAVALKASAESG 266
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ G+ +H +K F ++ +V + L MY+K K R+F M T +VVSWT +I
Sbjct: 267 LLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIM 326
Query: 366 GLVR 377
V+
Sbjct: 327 TYVQ 330
Score = 79.7 bits (195), Expect = 2e-13
Identities = 38/120 (31%), Positives = 68/120 (56%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
LF MS D +SWTN+I YV D AL F +M + + + + + + ACA
Sbjct: 309 LFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMR-KSDVSPNEYTFASVISACANLA 367
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ GE +HG+ ++ VD++ V ++++ +Y+K G + E VFD M ++++SW+ +I+
Sbjct: 368 ITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIIS 427
Score = 76.6 bits (187), Expect = 2e-12
Identities = 42/121 (34%), Positives = 66/121 (54%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+FD M+ +D ISW+ IIS Y S + EA S M E + + FAL+ L C
Sbjct: 410 VFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGP-KPNEFALASVLSVCGSMA 468
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ G+ +H Y + V SAL+ MY++ G + E ++FD++ ++VSWTA+I
Sbjct: 469 LLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMIN 528
Query: 366 G 368
G
Sbjct: 529 G 529
>ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 169 bits (427), Expect = 3e-40
Identities = 80/126 (63%), Positives = 99/126 (78%)
Frame = +3
Query: 3 HLFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALN 182
++FD M+ RDEISWT +I+GYV+ASDS EAL LFS MWV+P L+ D F +S+ALKAC L
Sbjct: 111 YMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLG 170
Query: 183 MNVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVI 362
+N+ GE LHG+ VK+ ++SVFV SAL+DMY KVGKI +GCRVF M RNVVSWTA+I
Sbjct: 171 VNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAII 230
Query: 363 TGLVRA 380
GLV A
Sbjct: 231 AGLVHA 236
Score = 90.9 bits (224), Expect = 1e-16
Identities = 50/124 (40%), Positives = 74/124 (59%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F M+ R+ +SWT II+G VHA ++EAL FS+MW+ + DS ++ALKA A +
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISK-VGYDSHTFAIALKASADSS 272
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
+ G+ +H +K F +S FV + L MY K GK R+F+ M +VVSWT +IT
Sbjct: 273 LLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLIT 332
Query: 366 GLVR 377
V+
Sbjct: 333 TYVQ 336
Score = 70.1 bits (170), Expect = 2e-10
Identities = 32/119 (26%), Positives = 66/119 (55%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
LF+ M + D +SWT +I+ YV + A+ F +M + + + + + + ACA
Sbjct: 315 LFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMR-KSNVSPNKYTFAAVISACANLA 373
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVI 362
+ GE +HG+ ++ VD++ V +++V +Y+K G + VF + ++++SW+ +I
Sbjct: 374 IAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTII 432
Score = 69.3 bits (168), Expect = 3e-10
Identities = 39/121 (32%), Positives = 63/121 (52%)
Frame = +3
Query: 6 LFDDMSLRDEISWTNIISGYVHASDSLEALTLFSKMWVEPTLRIDSFALSLALKACALNM 185
+F ++ +D ISW+ II+ Y + EA S M E + + FALS L C
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGP-KPNEFALSSVLSVCGSMA 474
Query: 186 NVQCGECLHGYCVKTNFVDSVFVGSALVDMYTKVGKIGEGCRVFDNMVTRNVVSWTAVIT 365
++ G+ +H + + V SAL+ MY+K G + E ++F+ M N++SWTA+I
Sbjct: 475 LLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMIN 534
Query: 366 G 368
G
Sbjct: 535 G 535