BLASTX nr result

ID: Bupleurum21_contig00033534 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00033534
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_742520.1| hypothetical protein [Plasmodium chabaudi chaba...    62   5e-08
ref|XP_002259236.1| translation elongation factor EF-1 [Plasmodi...    62   5e-08
ref|XP_001615349.1| translation elongation factor EF-1, subunit ...    62   5e-08
ref|XP_003631062.1| Eukaryotic peptide chain release factor GTP-...    61   8e-08
ref|XP_004222456.1| translation elongation factor EF-1 subunit a...    61   1e-07

>ref|XP_742520.1| hypothetical protein [Plasmodium chabaudi chabaudi]
           gi|56521549|emb|CAH74290.1| hypothetical protein
           PC000020.00.0 [Plasmodium chabaudi chabaudi]
          Length = 240

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
 Frame = -2

Query: 371 KFTDLYLLAQASMDLMDKDSSENEASEQEPKRRKVMIEADAEKRQMDVIFIGDHAAGKST 192
           KF+ + L  + + D+ + + +E E  E +   +KV +     +  +++IFIG   AGKST
Sbjct: 59  KFSKMSLTPEKNEDI-EVEKAEKETQEDKGVDKKVNLVQVDSRPHLNIIFIGHVDAGKST 117

Query: 191 TCGFMLHG---------DEYRGMDVSDIRTD--LNTLMDYCMDEQKLNLTVEVGREDYTT 45
            CG +L+          ++Y        R    L  +MD   +E++   TVEVGR  + T
Sbjct: 118 ACGNILYILGYVDDRTIEKYEREAKEKNRESWFLAFIMDINEEERQKGKTVEVGRAHFET 177

Query: 44  KRTRFSFLDAPGHQ 3
           K  RF+ LDAPGH+
Sbjct: 178 KDRRFTILDAPGHK 191


>ref|XP_002259236.1| translation elongation factor EF-1 [Plasmodium knowlesi strain H]
           gi|193809307|emb|CAQ40009.1| translation elongation
           factor EF-1, putative [Plasmodium knowlesi strain H]
          Length = 545

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
 Frame = -2

Query: 332 DLMDKDSSENEASEQEPKRRKVMIEADAEKRQMDVIFIGDHAAGKSTTCGFMLHG----- 168
           DL  KD  E+   E+  + +  +++ D  ++ +++IFIG   AGKST CG +L+      
Sbjct: 79  DLEKKDQGEDSQGEKIVQAKTNLVQVDP-RQHLNIIFIGHVDAGKSTACGNILYILGYVD 137

Query: 167 ----DEYRGMDVSDIRTD--LNTLMDYCMDEQKLNLTVEVGREDYTTKRTRFSFLDAPGH 6
               ++Y        R    L  +MD   +E++   TVEVGR  + TK  RF+ LDAPGH
Sbjct: 138 DRTIEKYEREAKEKNRESWFLAFIMDINEEERQKGKTVEVGRAHFETKDRRFTILDAPGH 197

Query: 5   Q 3
           +
Sbjct: 198 K 198


>ref|XP_001615349.1| translation elongation factor EF-1, subunit alpha [Plasmodium vivax
           Sal-1] gi|148804223|gb|EDL45622.1| translation
           elongation factor EF-1, subunit alpha, putative
           [Plasmodium vivax]
          Length = 547

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
 Frame = -2

Query: 332 DLMDKDSSENEASEQEPKRRKVMIEADAEKRQMDVIFIGDHAAGKSTTCGFMLHG----- 168
           DL  KD  E+   E+  + +  +I+ D  +  +++IFIG   AGKST CG +L+      
Sbjct: 81  DLEKKDQVEDSQGEKAEQVKNNLIQVDP-RHHLNIIFIGHVDAGKSTACGNILYILGYVD 139

Query: 167 ----DEYRGMDVSDIRTD--LNTLMDYCMDEQKLNLTVEVGREDYTTKRTRFSFLDAPGH 6
               ++Y        R    L  +MD   +E++   TVEVGR  + TK  RF+ LDAPGH
Sbjct: 140 DRTIEKYEREAKEKNRESWFLAFIMDINEEERQKGKTVEVGRAHFETKDRRFTILDAPGH 199

Query: 5   Q 3
           +
Sbjct: 200 K 200


>ref|XP_003631062.1| Eukaryotic peptide chain release factor GTP-binding subunit
           [Medicago truncatula] gi|355525084|gb|AET05538.1|
           Eukaryotic peptide chain release factor GTP-binding
           subunit [Medicago truncatula]
          Length = 497

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 21/132 (15%)
 Frame = -2

Query: 335 MDLMDKDSSEN---EASEQEPKRRKVMIEA-------DAEKRQMDVIFIGDHAAGKSTTC 186
           +D MD+D  E    +A E  PK +   I +         EKR ++V+FIG   AGKSTT 
Sbjct: 31  VDEMDEDPKEEVQAQAVEAGPKAKDKEIPSVQDEEVEQTEKRHLNVVFIGHVDAGKSTTG 90

Query: 185 G--FMLHGD---------EYRGMDVSDIRTDLNTLMDYCMDEQKLNLTVEVGREDYTTKR 39
           G    L G          E    D S     +  +MD   +E+    TVEVGR  + T+ 
Sbjct: 91  GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETET 150

Query: 38  TRFSFLDAPGHQ 3
           TRF+ LDAPGH+
Sbjct: 151 TRFTILDAPGHK 162


>ref|XP_004222456.1| translation elongation factor EF-1 subunit alpha [Plasmodium
           cynomolgi strain B] gi|389583775|dbj|GAB66509.1|
           translation elongation factor EF-1 subunit alpha
           [Plasmodium cynomolgi strain B]
          Length = 546

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
 Frame = -2

Query: 332 DLMDKDSSENEASEQEPKRRKVMIEADAEKRQMDVIFIGDHAAGKSTTCGFMLHG----- 168
           +L  KD  E+   E+  + +K +++ D  +  +++IFIG   AGKST CG +L+      
Sbjct: 80  ELDKKDQVEDSQGEKTSQIKKNLVQVDP-RPHLNIIFIGHVDAGKSTACGNILYILGYVD 138

Query: 167 ----DEYRGMDVSDIRTD--LNTLMDYCMDEQKLNLTVEVGREDYTTKRTRFSFLDAPGH 6
               ++Y        R    L  +MD   +E++   TVEVGR  + TK  RF+ LDAPGH
Sbjct: 139 DRTIEKYEREAKEKNRESWFLAFIMDINEEERQKGKTVEVGRAHFETKDRRFTILDAPGH 198

Query: 5   Q 3
           +
Sbjct: 199 K 199


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