BLASTX nr result
ID: Bupleurum21_contig00033452
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00033452
(380 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2... 150 8e-35
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,... 148 5e-34
ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
emb|CBI18974.3| unnamed protein product [Vitis vinifera] 144 1e-32
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi... 141 5e-32
>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
predicted protein [Populus trichocarpa]
Length = 440
Score = 150 bits (380), Expect = 8e-35
Identities = 68/94 (72%), Positives = 83/94 (88%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
R+EDA+ TFL+ME N + PDVAVYNA IGAFCK N+L+NVYR+L+EM+ KGV PNSRT+N
Sbjct: 244 RIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFN 303
Query: 279 IILSSLIDREETDEAYKIFRRMIKICDPDSDTYT 380
IILSSLI R ETDEAY++F RMIK+C+PD+DTYT
Sbjct: 304 IILSSLIGRGETDEAYRVFLRMIKVCEPDADTYT 337
Score = 58.2 bits (139), Expect = 7e-07
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
+VE+A+ TF M+K V P++A +N + A CK + I D ++ + V P+S+TY+
Sbjct: 105 KVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFV-PDSKTYS 163
Query: 279 IILSSLIDREETDEAYKIFRRMIKI-CDPDSDTY 377
I+L +A +IFR M+ C PD TY
Sbjct: 164 ILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTY 197
Score = 57.8 bits (138), Expect = 9e-07
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -1
Query: 101 PNSRTYNIILSSLIDREETDEAYKIFRRMIKIC 3
PNSRT+NIILSSLI R ETDEAY++F RMIK+C
Sbjct: 297 PNSRTFNIILSSLIGRGETDEAYRVFLRMIKVC 329
>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 439
Score = 148 bits (373), Expect = 5e-34
Identities = 67/94 (71%), Positives = 83/94 (88%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
R+EDA+DTFL MEKN V DVA YNA IGAFCKVNK +NVYR+L+EM++KG+ PNSRT N
Sbjct: 244 RIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLN 303
Query: 279 IILSSLIDREETDEAYKIFRRMIKICDPDSDTYT 380
IIL++LI R ETDEA+++FRRMIK+C+PD+DTYT
Sbjct: 304 IILNNLIARGETDEAFRVFRRMIKVCEPDADTYT 337
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
++E+A+ TF MEK V P++A +N A CK + I D + + V P+S+TY
Sbjct: 105 KLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFV-PDSKTYT 163
Query: 279 IILSSLIDREETDEAYKIFRRMIKI-CDPDSDTY 377
I+L +A +IFR M+ + C PD TY
Sbjct: 164 ILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTY 197
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 101 PNSRTYNIILSSLIDREETDEAYKIFRRMIKIC 3
PNSRT NIIL++LI R ETDEA+++FRRMIK+C
Sbjct: 297 PNSRTLNIILNNLIARGETDEAFRVFRRMIKVC 329
>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 144 bits (362), Expect = 1e-32
Identities = 65/94 (69%), Positives = 81/94 (86%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
R+EDA+ TFL ME+N + DVAVYNA IGAFCKVNKL+N YR+L+EM+ KG+ PNSRT N
Sbjct: 265 RIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCN 324
Query: 279 IILSSLIDREETDEAYKIFRRMIKICDPDSDTYT 380
IIL+SLI +TDEA+++FRRMIK+CDPD+DTYT
Sbjct: 325 IILNSLISCGDTDEAFRVFRRMIKVCDPDADTYT 358
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
+V++A+ TF MEK V P++A +N+ + A CK + I + M+ + + P+S+TY+
Sbjct: 126 KVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFI-PDSKTYS 184
Query: 279 IILSSLIDREETDEAYKIFRRMIKI-CDPDSDTY 377
I+L +A +IFR M+ + CDPD TY
Sbjct: 185 ILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTY 218
>emb|CBI18974.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 144 bits (362), Expect = 1e-32
Identities = 65/94 (69%), Positives = 81/94 (86%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
R+EDA+ TFL ME+N + DVAVYNA IGAFCKVNKL+N YR+L+EM+ KG+ PNSRT N
Sbjct: 113 RIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCN 172
Query: 279 IILSSLIDREETDEAYKIFRRMIKICDPDSDTYT 380
IIL+SLI +TDEA+++FRRMIK+CDPD+DTYT
Sbjct: 173 IILNSLISCGDTDEAFRVFRRMIKVCDPDADTYT 206
>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 141 bits (356), Expect = 5e-32
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
R+EDA+ TFL+ME+N V DVA YNA I AFCK NK++NVYR+L +M+ KGVNPNSRT N
Sbjct: 244 RIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCN 303
Query: 279 IILSSLIDREETDEAYKIFRRMIKICDPDSDTYT 380
II++SLI R ETDEA+KIFRRMIK+C+PD D+YT
Sbjct: 304 IIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYT 337
Score = 61.2 bits (147), Expect = 8e-08
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +3
Query: 99 RVEDAIDTFLQMEKNRVSPDVAVYNAFIGAFCKVNKLENVYRILDEMEHKGVNPNSRTYN 278
+VE+A+ TF MEK + P+VA +N + A CK + I D M+ + V P+S+TY+
Sbjct: 105 KVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFV-PDSKTYS 163
Query: 279 IILSSLIDREETDEAYKIFRRMIKI-CDPDSDTYT 380
I++ +A +I+R MI C PD TY+
Sbjct: 164 ILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYS 198
Score = 58.9 bits (141), Expect = 4e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -1
Query: 104 NPNSRTYNIILSSLIDREETDEAYKIFRRMIKIC 3
NPNSRT NII++SLI R ETDEA+KIFRRMIK+C
Sbjct: 296 NPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVC 329