BLASTX nr result

ID: Bupleurum21_contig00033430 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00033430
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_849549.1| zinc finger protein LSD1 [Arabidopsis thaliana]...    54   1e-05
ref|XP_002869934.1| hypothetical protein ARALYDRAFT_492829 [Arab...    54   1e-05
ref|NP_001154257.1| zinc finger protein LSD1 [Arabidopsis thalia...    54   1e-05
dbj|BAH57095.1| AT4G20380 [Arabidopsis thaliana]                       54   1e-05
ref|NP_849548.1| zinc finger protein LSD1 [Arabidopsis thaliana]...    54   1e-05

>ref|NP_849549.1| zinc finger protein LSD1 [Arabidopsis thaliana]
           gi|145333512|ref|NP_001078413.1| zinc finger protein
           LSD1 [Arabidopsis thaliana]
           gi|75101274|sp|P94077.1|LSD1_ARATH RecName: Full=Protein
           LSD1; AltName: Full=Protein CHILLING SENSITIVE 4;
           AltName: Full=Protein LESION SIMULATING DISEASE 1;
           Short=AtLSD1; AltName: Full=Putative zinc finger LSD1
           gi|1872521|gb|AAC49660.1| zinc-finger protein Lsd1
           [Arabidopsis thaliana] gi|1872523|gb|AAC49661.1|
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|5262161|emb|CAB45804.1| zinc-finger protein Lsd1
           [Arabidopsis thaliana] gi|7268834|emb|CAB79038.1|
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|332658915|gb|AEE84315.1| zinc finger protein LSD1
           [Arabidopsis thaliana] gi|332658921|gb|AEE84321.1| zinc
           finger protein LSD1 [Arabidopsis thaliana]
          Length = 189

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 3   GSQSVKCAICQYVTNTNIGNTSAPVPAGRPNG------XXXXXXXXXXXXVIVQNPVSVD 164
           G+ SVKCA+CQ+VTN N+ N   P+P  RPNG                  V+V+NP+SVD
Sbjct: 112 GASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVVENPMSVD 171


>ref|XP_002869934.1| hypothetical protein ARALYDRAFT_492829 [Arabidopsis lyrata subsp.
           lyrata] gi|297315770|gb|EFH46193.1| hypothetical protein
           ARALYDRAFT_492829 [Arabidopsis lyrata subsp. lyrata]
          Length = 184

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 3   GSQSVKCAICQYVTNTNIGNTSAPVPAGRPNG------XXXXXXXXXXXXVIVQNPVSVD 164
           G+ SVKCA+CQ+VTN N+ N   P+P  RPNG                  V+V+NP+SVD
Sbjct: 107 GASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGSACPGTMPSSTPPSQTQTVVVENPMSVD 166


>ref|NP_001154257.1| zinc finger protein LSD1 [Arabidopsis thaliana]
           gi|332658922|gb|AEE84322.1| zinc finger protein LSD1
           [Arabidopsis thaliana]
          Length = 210

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 3   GSQSVKCAICQYVTNTNIGNTSAPVPAGRPNG------XXXXXXXXXXXXVIVQNPVSVD 164
           G+ SVKCA+CQ+VTN N+ N   P+P  RPNG                  V+V+NP+SVD
Sbjct: 133 GASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVVENPMSVD 192


>dbj|BAH57095.1| AT4G20380 [Arabidopsis thaliana]
          Length = 218

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 3   GSQSVKCAICQYVTNTNIGNTSAPVPAGRPNG------XXXXXXXXXXXXVIVQNPVSVD 164
           G+ SVKCA+CQ+VTN N+ N   P+P  RPNG                  V+V+NP+SVD
Sbjct: 112 GASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVVENPMSVD 171


>ref|NP_849548.1| zinc finger protein LSD1 [Arabidopsis thaliana]
           gi|30685087|ref|NP_567599.3| zinc finger protein LSD1
           [Arabidopsis thaliana] gi|79325187|ref|NP_001031678.1|
           zinc finger protein LSD1 [Arabidopsis thaliana]
           gi|79325189|ref|NP_001031679.1| zinc finger protein LSD1
           [Arabidopsis thaliana] gi|145323158|ref|NP_001031680.2|
           zinc finger protein LSD1 [Arabidopsis thaliana]
           gi|19423936|gb|AAL87301.1| putative zinc-finger protein
           Lsd1 [Arabidopsis thaliana] gi|21436207|gb|AAM51391.1|
           putative zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|21593381|gb|AAM65330.1| zinc-finger protein Lsd1
           [Arabidopsis thaliana] gi|332658916|gb|AEE84316.1| zinc
           finger protein LSD1 [Arabidopsis thaliana]
           gi|332658917|gb|AEE84317.1| zinc finger protein LSD1
           [Arabidopsis thaliana] gi|332658918|gb|AEE84318.1| zinc
           finger protein LSD1 [Arabidopsis thaliana]
           gi|332658919|gb|AEE84319.1| zinc finger protein LSD1
           [Arabidopsis thaliana] gi|332658920|gb|AEE84320.1| zinc
           finger protein LSD1 [Arabidopsis thaliana]
          Length = 184

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 3   GSQSVKCAICQYVTNTNIGNTSAPVPAGRPNG------XXXXXXXXXXXXVIVQNPVSVD 164
           G+ SVKCA+CQ+VTN N+ N   P+P  RPNG                  V+V+NP+SVD
Sbjct: 107 GASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVVENPMSVD 166


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