BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00033355
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-...   124   1e-26
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   122   4e-26
ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-...   117   1e-24
ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   114   8e-24
emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsi...   114   8e-24

>ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 1094

 Score =  124 bits (310), Expect = 1e-26
 Identities = 72/145 (49%), Positives = 86/145 (59%), Gaps = 13/145 (8%)
 Frame = -1

Query: 396 QKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXTVNFSPAKRALTSQFTS---PTKPSK 226
           QKQQVISRFFA                        V FSP+KR ++S   S   P K SK
Sbjct: 4   QKQQVISRFFAPKPKSPSLSSSSSSPAKVSAT---VTFSPSKRLISSAIASQLTPPKSSK 60

Query: 225 NPKLSPHTHNPIPN-----LHQKFVEKLLEPSHDLLEPXXXXXXXVNP-----KYTPLEQ 76
            PKLSPHTHNP+P+     LHQ+F++KLLEP+ D  +P        N      KYTPLEQ
Sbjct: 61  RPKLSPHTHNPLPSIPNPSLHQRFLDKLLEPTDDSFQPSNQNPRTSNGADPKYKYTPLEQ 120

Query: 75  QVVQLKAKYPDVLLMIEVGYKFRFF 1
           QVV LK +YPDVLLM+EVGY++RFF
Sbjct: 121 QVVDLKKRYPDVLLMVEVGYRYRFF 145


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  122 bits (305), Expect = 4e-26
 Identities = 72/133 (54%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = -1

Query: 396 QKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXTVNFSPAKRALTSQFTSPTKPSKNPK 217
           QKQQVISRFFA                        V FSPAKR LTS FT+  K   +PK
Sbjct: 4   QKQQVISRFFAPKPKSPPPPPPPPPKISAT-----VTFSPAKRRLTSNFTTSRK---HPK 55

Query: 216 LSPHTHNPIP-NLHQKFVEKLLEPSHDLLEPXXXXXXXVNPKYTPLEQQVVQLKAKYPDV 40
           LSPHT NP+P +LHQ+F++KLLEPS     P         P YTPLEQQV+ LKAK+PDV
Sbjct: 56  LSPHTQNPVPPSLHQRFLQKLLEPSTPQQHPASSSKP---PTYTPLEQQVLDLKAKHPDV 112

Query: 39  LLMIEVGYKFRFF 1
           LLM+EVGYK+RFF
Sbjct: 113 LLMVEVGYKYRFF 125


>ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 966

 Score =  117 bits (293), Expect = 1e-24
 Identities = 72/159 (45%), Positives = 87/159 (54%), Gaps = 27/159 (16%)
 Frame = -1

Query: 396 QKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXT--------------VNFSPAKRALT 259
           QKQQVISRFFA                       T              V FSP+KR ++
Sbjct: 4   QKQQVISRFFAPKPKSPSLSSSSSSSSSATAADITPPTQPFSPAKVSATVTFSPSKRLIS 63

Query: 258 SQFTS---PTKPSKNPKLSPHTHNPIPN-----LHQKFVEKLLEPSHDLLEPXXXXXXXV 103
           S   S   P K SK PKLSPHTHNP+P+     LHQ+F+++LLEP+ D  +P        
Sbjct: 64  SAIASQLTPPKSSKRPKLSPHTHNPLPSIPNPSLHQRFLDRLLEPTDDSFQPSNQNPRTS 123

Query: 102 NP-----KYTPLEQQVVQLKAKYPDVLLMIEVGYKFRFF 1
           N      KYTPLEQQVV LK +YPDVLLM+EVGY++RFF
Sbjct: 124 NGADPKYKYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFF 162


>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
           gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
           mismatch repair protein MSH3; Short=AtMSH3; AltName:
           Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
           Msh3 protein [Arabidopsis thaliana]
           gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
           Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  114 bits (285), Expect = 8e-24
 Identities = 66/136 (48%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
 Frame = -1

Query: 396 QKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXT--VNFSPAKRALTSQFTSPTKPSKN 223
           QKQQ ISRFFA                       +  V+FSP+KR L S   +   P K 
Sbjct: 4   QKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKISATVSFSPSKRKLLSDHLAAASPKK- 62

Query: 222 PKLSPHTHNPIP--NLHQKFVEKLLEPSHDLLEPXXXXXXXVNPKYTPLEQQVVQLKAKY 49
           PKLSPHT NP+P  NLHQ+F+++ LEPS +   P        + KYTPLEQQVV+LK+KY
Sbjct: 63  PKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSS----SRKYTPLEQQVVELKSKY 118

Query: 48  PDVLLMIEVGYKFRFF 1
           PDV+LM+EVGY++RFF
Sbjct: 119 PDVVLMVEVGYRYRFF 134


>emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
          Length = 1076

 Score =  114 bits (285), Expect = 8e-24
 Identities = 66/136 (48%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
 Frame = -1

Query: 396 QKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXT--VNFSPAKRALTSQFTSPTKPSKN 223
           QKQQ ISRFFA                       +  V+FSP+KR L S   +   P K 
Sbjct: 4   QKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKISATVSFSPSKRKLLSDHLAAASPKK- 62

Query: 222 PKLSPHTHNPIP--NLHQKFVEKLLEPSHDLLEPXXXXXXXVNPKYTPLEQQVVQLKAKY 49
           PKLSPHT NP+P  NLHQ+F+++ LEPS +   P        + KYTPLEQQVV+LK+KY
Sbjct: 63  PKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSS----SRKYTPLEQQVVELKSKY 118

Query: 48  PDVLLMIEVGYKFRFF 1
           PDV+LM+EVGY++RFF
Sbjct: 119 PDVVLMVEVGYRYRFF 134