BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00033268
         (683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containi...   240   2e-61
ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|2...   229   3e-58
ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata] g...   227   2e-57
ref|XP_002521858.1| pentatricopeptide repeat-containing protein,...   219   3e-55
ref|NP_198787.1| pentatricopeptide repeat-containing protein [Ar...   219   3e-55

>ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like
            [Vitis vinifera]
          Length = 762

 Score =  240 bits (612), Expect = 2e-61
 Identities = 113/178 (63%), Positives = 149/178 (83%)
 Frame = -2

Query: 682  AKQLLFKLYYGDSVPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQ 503
            AK+LLFKL Y +SVP DVTY++LIE  SN+E KSVVALIKGFC+KGLM EAD+V+ES+++
Sbjct: 583  AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 642

Query: 502  RGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEE 323
            R  KP  AVYN++IHGHCRGG+L KA N+Y+EM+ +G VPHT T+I   + L   G+ EE
Sbjct: 643  RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEE 702

Query: 322  LNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPNSGKSTHA 149
            +++VI +TLRSC+L++AELAK+LVEIN+KEGN++A  +VL +MAKDGLLPNSGK+ +A
Sbjct: 703  MSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPNSGKTAYA 760



 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 43/162 (26%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
 Frame = -2

Query: 637 VDVTYNSLIETSSNVEMKSVVA---LIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNI 467
           +D  +  L   SS     ++++   +I G C +G MKEA ++ E +  +G  P+   YN 
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 466 MIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIE--NTLR 293
           +++G+C+ G+ H+A  ++ EM++NG+ P   +++ +T  + +      LN+ +E  + +R
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSP---SVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 292 SCQLSDAELA-KLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
              L   E     L++  +++G ++ A+ +LNEM + G  P+
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 40/152 (26%), Positives = 72/152 (47%)
 Frame = -2

Query: 622 NSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRG 443
           N + E+  +  + +  A I G C+   M+EA  V + ++++G  P+   Y+ +I G CR 
Sbjct: 413 NEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRK 472

Query: 442 GDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELA 263
           G+L +A  M QEM++ G+ P   T  +  + L       E   + +  L      D    
Sbjct: 473 GELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTY 532

Query: 262 KLLVEINNKEGNIDAAFDVLNEMAKDGLLPNS 167
             L+     EG+++ A  + +EM   G LP++
Sbjct: 533 TTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 564



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
 Frame = -2

Query: 682 AKQLLFKLYYGDSVPVDVTYNSLI-----------------ETSSNVEMKSVV---ALIK 563
           A ++L ++ Y    P +VTYN+L+                 E   N    SVV   ALI 
Sbjct: 303 AWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN 362

Query: 562 GFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVP 383
             C    +  A + ++ +  RG +PN   Y  +I G  R G L++A  +  EM ++G  P
Sbjct: 363 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422

Query: 382 HTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVL 203
              T  AF          EE   V++  +      D      ++    ++G +D AF + 
Sbjct: 423 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 482

Query: 202 NEMAKDGLLPNS 167
            EM + G+ P++
Sbjct: 483 QEMVEKGVSPDA 494



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
 Frame = -2

Query: 616 LIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGD 437
           ++E     ++ S   +I GFC KG +  A Q+ + ++++G  P+A  Y+ +I G C    
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 509

Query: 436 LHKACNMYQEMMQNGLVP----HTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAE 269
           L +AC++ QEM+  GL P    +T  I A+  E   G L + L+ + +  +    L DA 
Sbjct: 510 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE---GDLNKALH-LHDEMIHKGFLPDAV 565

Query: 268 LAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
              +L+   NK+     A  +L ++  +  +P+
Sbjct: 566 TYSVLINGLNKQARTREAKRLLFKLIYEESVPS 598



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 36/139 (25%), Positives = 61/139 (43%)
 Frame = -2

Query: 586 KSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQE 407
           ++   LI GF  +GL+ EA ++   + + G  P+   YN  IHGHC    + +A  + QE
Sbjct: 390 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQE 449

Query: 406 MMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGN 227
           M++ GL P   +           G  +   Q+ +  +      DA     L++   +   
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 509

Query: 226 IDAAFDVLNEMAKDGLLPN 170
           +  A D+  EM   GL P+
Sbjct: 510 LTEACDLSQEMLDMGLPPD 528



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
 Frame = -2

Query: 643 VPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMK-EADQVYESLLQRGEKPNAAVYNI 467
           +P  ++YNS+++           A+++    +G +K  A++VY  +++    PN   YNI
Sbjct: 174 MPGVLSYNSVLD-----------AIVRS---RGSVKLSAEEVYREMIRSRVSPNVYTYNI 219

Query: 466 MIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSC 287
           +I G C  G+L K    + EM +NG +P+  T           G  +E   ++++   S 
Sbjct: 220 LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKS--MSS 277

Query: 286 QLSDAELAKLLVEINN--KEGNIDAAFDVLNEMAKDGLLPN 170
           +     L    V IN   +EG++  A+++L EM   G  P+
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318


>ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|222849505|gb|EEE87052.1|
            predicted protein [Populus trichocarpa]
          Length = 751

 Score =  229 bits (585), Expect = 3e-58
 Identities = 107/178 (60%), Positives = 144/178 (80%)
 Frame = -2

Query: 682  AKQLLFKLYYGDSVPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQ 503
            AK+LL KL+Y +S+P  +TY++LIE+ S++E KSVVALIKGFC+KGLM EADQV+ES+++
Sbjct: 572  AKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIK 631

Query: 502  RGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEE 323
            R +KPN AVYN++IHGHCR G++HKA  +Y+EM+  G +PHT TIIA  + L + G+ E+
Sbjct: 632  RNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQ 691

Query: 322  LNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPNSGKSTHA 149
            LN VI + LRSC+LSDAEL+K LV+IN+KEGNIDA F++L EMAKDG LP+     +A
Sbjct: 692  LNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGAAPANA 749



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 39/136 (28%), Positives = 66/136 (48%)
 Frame = -2

Query: 574 ALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQN 395
           AL+ G C+ G M+EA  +   +  +G  P+   Y+ +I G CR  +L +A  M  EM++ 
Sbjct: 418 ALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEK 477

Query: 394 GLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAA 215
           G+ P   T  +  + L       E   + +  L    L D      L+    KEG+++ A
Sbjct: 478 GVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEA 537

Query: 214 FDVLNEMAKDGLLPNS 167
            ++ +EM K G LP++
Sbjct: 538 LNLHDEMIKKGFLPDT 553



 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
 Frame = -2

Query: 571 LIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNG 392
           +I G C  G ++E   V   + ++G  P+   YN +++G+C+ G+ H+A  ++ EM++NG
Sbjct: 279 VINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG 338

Query: 391 LVPHTATIIAFTREL-RNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAA 215
           L P   T  +    + + G L   +    +  +R  + +      L+   + K G +D A
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK-GFMDEA 397

Query: 214 FDVLNEMAKDGLLP 173
           + + +EM + G  P
Sbjct: 398 YRIWDEMIRSGFPP 411



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 50/200 (25%)
 Frame = -2

Query: 616  LIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGD 437
            ++E   + +  +  +LI+G C +  + EA  +++ +L +   P+   Y  +I+G+C+ GD
Sbjct: 474  MVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGD 533

Query: 436  LHKACNMYQEMMQNGLVPHTATI---------IAFTRELR-------------NG----- 338
            L++A N++ EM++ G +P T T           A TRE +             NG     
Sbjct: 534  LNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDT 593

Query: 337  -----------------------GLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGN 227
                                   GL  E +QV E+ ++  Q  +  +  +++  + ++GN
Sbjct: 594  LIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGN 653

Query: 226  IDAAFDVLNEMAKDGLLPNS 167
            +  A  +  EM   G +P++
Sbjct: 654  VHKAHKLYKEMVDFGFIPHT 673



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
 Frame = -2

Query: 592 EMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMY 413
           ++ S   +I GFC    +  A Q+   ++++G  P+A  Y+ +I G C    L++AC+++
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 412 QEMMQNGLVP----HTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEI 245
           QEM+   L+P    +T+ I  + +E   G L E LN + +  ++   L D     +L+  
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKE---GDLNEALN-LHDEMIKKGFLPDTVTYNVLING 562

Query: 244 NNKEGNIDAAFDVLNEMAKDGLLPN 170
            NK+     A  +L ++  D  +PN
Sbjct: 563 LNKQARTREAKRLLLKLFYDESIPN 587



 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 40/152 (26%), Positives = 67/152 (44%)
 Frame = -2

Query: 625 YNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCR 446
           Y  +I +  ++ + S   LI+GFC  G ++   + +E + +    PN   YN +I  +C+
Sbjct: 191 YREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCK 250

Query: 445 GGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAEL 266
              + +A  + + M   GL P+  T       L   G  EE + V+    R     D   
Sbjct: 251 LKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVT 310

Query: 265 AKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
              LV    K GN   A  + +EM ++GL P+
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPD 342


>ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
            gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 747

 Score =  227 bits (578), Expect = 2e-57
 Identities = 108/175 (61%), Positives = 139/175 (79%)
 Frame = -2

Query: 682  AKQLLFKLYYGDSVPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQ 503
            AK+LL KL+Y +SVP DVTY++LIE  SN+E KSVV+LIKGFC+KG+M EADQV+ES+L+
Sbjct: 574  AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLE 633

Query: 502  RGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEE 323
            +  KP+   YN+MIHGHCRGGD+ KA ++Y+EM+++G + HT T+IA  + L   G   E
Sbjct: 634  KNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693

Query: 322  LNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPNSGKS 158
            LN VI N LRSC+LS+AE AK+LVEIN++EGN+D   DVL EMAKDG LPN GKS
Sbjct: 694  LNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN-GKS 747



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
 Frame = -2

Query: 625 YNSLIETSSNVEMKSVV---ALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHG 455
           Y  L E   N    SVV   ALI G C+ G M +A  V E + ++G  P+   Y+ ++ G
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG 459

Query: 454 HCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSD 275
            CR  D+ +A  + ++M+  G+ P T T  +  +       T+E   + +  LR     D
Sbjct: 460 FCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPD 519

Query: 274 AELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
                 L+     EG++  A  + NEM + G+LP+
Sbjct: 520 EFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPD 554



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
 Frame = -2

Query: 643 VPVDVTYNSLIE-------TSSNVEMKSVVAL-------------IKGFCLKGLMKEADQ 524
           +P  VTYN+LI+            E+   +AL             I G C +G MKE   
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISF 296

Query: 523 VYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELR 344
           V   + +RG   +   YN +I G+C+ G+ H+A  M+ EM+++GL P   T  +    + 
Sbjct: 297 VLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMC 356

Query: 343 NGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
             G      + ++         +      LV+  +++G ++ A+ VL EM  +G  P+
Sbjct: 357 KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPS 414



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 50/197 (25%)
 Frame = -2

Query: 574  ALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQN 395
            +LI+GFC +   KEA  +++ +L+ G  P+   Y  +I+ +C  GDL KA  ++ EM++ 
Sbjct: 490  SLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEK 549

Query: 394  GLVPHTATII---------AFTRELRN--------------------------------- 341
            G++P   T           A TRE +                                  
Sbjct: 550  GVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVV 609

Query: 340  --------GGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKD 185
                     G+  E +QV E+ L      D     +++  + + G+I  A+ +  EM K 
Sbjct: 610  SLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669

Query: 184  GLLPNSGKSTHA*KSLH 134
            G L ++       K+LH
Sbjct: 670  GFLLHTVTVIALVKTLH 686



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 36/152 (23%), Positives = 70/152 (46%)
 Frame = -2

Query: 625 YNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCR 446
           +  ++++  +  + +   LI+GFCL G +  A + ++ + ++G  PN   YN +I G+C+
Sbjct: 193 FKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCK 252

Query: 445 GGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAEL 266
              +     + + M   GL P+  +       L   G  +E++ V+    +     D   
Sbjct: 253 LRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVT 312

Query: 265 AKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
              L++   KEGN   A  +  EM + GL P+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPS 344


>ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538896|gb|EEF40494.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  219 bits (559), Expect = 3e-55
 Identities = 102/178 (57%), Positives = 139/178 (78%)
 Frame = -2

Query: 682 AKQLLFKLYYGDSVPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQ 503
           A++LL KL+Y DS+P  VTYN+LIE   N+E KS VAL+KGFC+KGLM EADQV+ES++ 
Sbjct: 352 ARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMIN 411

Query: 502 RGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEE 323
           +  KPN A+YN++IHGHCR G++ KA  +Y+EM+    VPHT T++A  + L   G+  E
Sbjct: 412 KNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGE 471

Query: 322 LNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPNSGKSTHA 149
           LN+VI + LRSC+L+DAEL+K+LVEIN KEGN+D  F++L EMAKDGL+P++G  T+A
Sbjct: 472 LNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGTPTNA 529



 Score = 72.8 bits (177), Expect = 6e-11
 Identities = 34/134 (25%), Positives = 67/134 (50%)
 Frame = -2

Query: 571 LIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNG 392
           +I G C  G +KE  +V   + ++G  P+   YN +++G+C+ G+ H+A  ++ EM++NG
Sbjct: 59  IINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNG 118

Query: 391 LVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAF 212
           L P+  T  +    +   G      +  +         +      ++    ++G +D A+
Sbjct: 119 LSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAY 178

Query: 211 DVLNEMAKDGLLPN 170
            VLNEM + G +P+
Sbjct: 179 RVLNEMTRSGFIPS 192



 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
 Frame = -2

Query: 586 KSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQE 407
           ++   +I GF  +GL+ EA +V   + + G  P+   YN +I+GHC  G + +A  + Q+
Sbjct: 159 RTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQD 218

Query: 406 MMQNGLVPHTATIIAFTRELRNGGLTEELNQVIE---NTLRSCQLSDAELAKLLVEINNK 236
           M+  G++P    +++++  +      +EL++  +     +    L DA     L++   +
Sbjct: 219 MVGKGVLP---DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE 275

Query: 235 EGNIDAAFDVLNEMAKDGLLPN 170
           +  +  A D+  EM    L P+
Sbjct: 276 QRRLTEACDMFQEMLTIKLPPD 297


>ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
            gi|10177971|dbj|BAB11377.1| unnamed protein product
            [Arabidopsis thaliana] gi|332007083|gb|AED94466.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 747

 Score =  219 bits (559), Expect = 3e-55
 Identities = 104/171 (60%), Positives = 133/171 (77%)
 Frame = -2

Query: 682  AKQLLFKLYYGDSVPVDVTYNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQ 503
            AK+LL KL+Y +SVP DVTY++LIE  SN+E KSVV+LIKGFC+KG+M EADQV+ES+L 
Sbjct: 574  AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633

Query: 502  RGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEE 323
            +  KP+   YNIMIHGHCR GD+ KA  +Y+EM+++G + HT T+IA  + L   G   E
Sbjct: 634  KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693

Query: 322  LNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
            LN VI + LRSC+LS+AE AK+LVEIN++EGN+D   DVL EMAKDG LPN
Sbjct: 694  LNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
 Frame = -2

Query: 625 YNSLIETSSNVEMKSVV---ALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHG 455
           Y  L E + N    SVV   ALI G C+ G M++A  V E + ++G  P+   Y+ ++ G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 454 HCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSD 275
            CR  D+ +A  + +EM++ G+ P T T  +  +       T+E   + E  LR     D
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 274 AELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
                 L+     EG+++ A  + NEM + G+LP+
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPD 554



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 36/134 (26%), Positives = 65/134 (48%)
 Frame = -2

Query: 571 LIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNG 392
           +I G C +G MKE   V   + +RG   +   YN +I G+C+ G+ H+A  M+ EM+++G
Sbjct: 281 VINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340

Query: 391 LVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAF 212
           L P   T  +    +   G      + ++         +      LV+  +++G ++ A+
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400

Query: 211 DVLNEMAKDGLLPN 170
            VL EM  +G  P+
Sbjct: 401 RVLREMNDNGFSPS 414



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/103 (29%), Positives = 53/103 (51%)
 Frame = -2

Query: 616 LIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCRGGD 437
           ++E     +  +  +LI+GFC +   KEA  +YE +L+ G  P+   Y  +I+ +C  GD
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535

Query: 436 LHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVI 308
           L KA  ++ EM++ G++P   T       L     T E  +++
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 37/152 (24%), Positives = 68/152 (44%)
 Frame = -2

Query: 625 YNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCR 446
           +  ++E+  +  + +   LI+GFC  G +  A  +++ +  +G  PN   YN +I G+C+
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 445 GGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRNGGLTEELNQVIENTLRSCQLSDAEL 266
              +     + + M   GL P+  +       L   G  +E++ V+    R     D   
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 265 AKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
              L++   KEGN   A  +  EM + GL P+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
 Frame = -2

Query: 640 PVDVTYNSLI--------------------ETSSNVEMKSVVALIKGFCLKGLMKEADQV 521
           P  VTYN+LI                    E   + ++ S   ++ GFC    + EA +V
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 520 YESLLQRGEKPNAAVYNIMIHGHCRGGDLHKACNMYQEMMQNGLVPHTATIIAFTRELRN 341
              ++++G KP+   Y+ +I G C      +AC++Y+EM++ GL P   T  A       
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 340 GGLTEELNQVIENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPN 170
            G  E+  Q+    +    L D     +L+   NK+     A  +L ++  +  +P+
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589



 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 36/179 (20%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
 Frame = -2

Query: 625  YNSLIETSSNVEMKSVVALIKGFCLKGLMKEADQVYESLLQRGEKPNAAVYNIMIHGHCR 446
            Y  ++      +  +  ALI  +C++G +++A Q++  ++++G  P+   Y+++I+G  +
Sbjct: 508  YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 445  GGDLHKACNM-----YQEMMQNGLVPHT----------ATIIAFTRELRNGGLTEELNQV 311
                 +A  +     Y+E + + +  HT           ++++  +     G+  E +QV
Sbjct: 568  QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 310  IENTLRSCQLSDAELAKLLVEINNKEGNIDAAFDVLNEMAKDGLLPNSGKSTHA*KSLH 134
             E+ L      D     +++  + + G+I  A+ +  EM K G L ++       K+LH
Sbjct: 628  FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALH 686