BLASTX nr result
ID: Bupleurum21_contig00031671
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00031671
(629 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-... 236 3e-60
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera] 236 3e-60
ref|XP_002529848.1| DNA repair and recombination protein RAD26, ... 230 2e-58
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu... 221 8e-56
ref|XP_003541362.1| PREDICTED: DNA repair and recombination prot... 219 2e-55
>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
Length = 1227
Score = 236 bits (601), Expect = 3e-60
Identities = 122/185 (65%), Positives = 152/185 (82%), Gaps = 2/185 (1%)
Frame = +2
Query: 2 RSRESIAVPTWTGRSGAAGAPSSVRSRFGSTVNTQIISSSRPSEELL-NSEERKLTVAAG 178
RSRESI+VPTWTGRSGAAGAPSSV +FGSTV++Q+I+ S+ SEE N + +AAG
Sbjct: 1041 RSRESISVPTWTGRSGAAGAPSSVSRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAG 1100
Query: 179 ATAGRALSSSELLARIRGNQQSAIGDGIEQQIGLASRS-GRANPSNNGTVRSSHNLSGVQ 355
A+AG+ALSS+ELLARIRGNQ+ A DG+E Q+G +S + R+ S + RS+HNLS VQ
Sbjct: 1101 ASAGKALSSAELLARIRGNQERATDDGLEHQLGSSSANRARSTDSGPSSSRSTHNLSSVQ 1160
Query: 356 PEVLIRQICTFLQERGGRTDSDTIVQHFRDKIPSKDRTLFKNLLKEIATLEKNPSGSSWV 535
PEVLIR+ICTF+Q++GG T+S +IVQHF+D+IPSKD LFKNLLKEIATLEK+P+GSSWV
Sbjct: 1161 PEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKDLPLFKNLLKEIATLEKDPNGSSWV 1220
Query: 536 LKQEY 550
LK EY
Sbjct: 1221 LKPEY 1225
>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
Length = 1249
Score = 236 bits (601), Expect = 3e-60
Identities = 122/185 (65%), Positives = 152/185 (82%), Gaps = 2/185 (1%)
Frame = +2
Query: 2 RSRESIAVPTWTGRSGAAGAPSSVRSRFGSTVNTQIISSSRPSEELL-NSEERKLTVAAG 178
RSRESI+VPTWTGRSGAAGAPSSV +FGSTV++Q+I+ S+ SEE N + +AAG
Sbjct: 1063 RSRESISVPTWTGRSGAAGAPSSVSRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAG 1122
Query: 179 ATAGRALSSSELLARIRGNQQSAIGDGIEQQIGLASRS-GRANPSNNGTVRSSHNLSGVQ 355
A+AG+ALSS+ELLARIRGNQ+ A DG+E Q+G +S + R+ S + RS+HNLS VQ
Sbjct: 1123 ASAGKALSSAELLARIRGNQERATDDGLEHQLGSSSANRARSTDSGPSSSRSTHNLSSVQ 1182
Query: 356 PEVLIRQICTFLQERGGRTDSDTIVQHFRDKIPSKDRTLFKNLLKEIATLEKNPSGSSWV 535
PEVLIR+ICTF+Q++GG T+S +IVQHF+D+IPSKD LFKNLLKEIATLEK+P+GSSWV
Sbjct: 1183 PEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKDLPLFKNLLKEIATLEKDPNGSSWV 1242
Query: 536 LKQEY 550
LK EY
Sbjct: 1243 LKPEY 1247
>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
communis] gi|223530676|gb|EEF32549.1| DNA repair and
recombination protein RAD26, putative [Ricinus communis]
Length = 1230
Score = 230 bits (586), Expect = 2e-58
Identities = 120/187 (64%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 2 RSRESIAVPTWTGRSGAAGAPSSVRSRFGSTVNTQIISSSRPSEELLNSEERKLTVAAGA 181
RS +S++VPTWTG+SG AGAPSSVR +FGSTVN+Q+I SS S +S + GA
Sbjct: 1047 RSHDSVSVPTWTGKSGTAGAPSSVRRKFGSTVNSQLIRSSDVSSNKTSSMNG---MGVGA 1103
Query: 182 TAGRALSSSELLARIRGNQQSAIGDGIEQQIGLASRSG-RANPSNNGTVRSSHNLSGVQP 358
+AG+ALSS+ELLARIRGNQ+ A+G G+EQQ GLAS S RA NNG R S NLSGVQP
Sbjct: 1104 SAGKALSSAELLARIRGNQERAVGAGLEQQFGLASTSANRAGSENNGVSRPSKNLSGVQP 1163
Query: 359 EVLIRQICTFLQERGGRTDSDTIVQHFRDKIPSKDRTLFKNLLKEIATLEKNPSGSSWVL 538
E+LIR+ICTF+Q+RGG TDS TIV HF+D+I KD LFKNLLKEIATLEK+P+G WVL
Sbjct: 1164 EILIRKICTFIQQRGGITDSATIVNHFKDRILEKDMPLFKNLLKEIATLEKDPNGKVWVL 1223
Query: 539 KQEYWEE 559
K EY ++
Sbjct: 1224 KPEYRQQ 1230
>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222857105|gb|EEE94652.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1206
Score = 221 bits (563), Expect = 8e-56
Identities = 113/184 (61%), Positives = 143/184 (77%), Gaps = 1/184 (0%)
Frame = +2
Query: 2 RSRESIAVPTWTGRSGAAGAPSSVRSRFGSTVNTQIISSSRPSEELLNSEERKLTVAAGA 181
RSR+SI+VPTWTG+SG AGAPSSVR +FGSTVN+Q+I SS S +++ +AAG
Sbjct: 1025 RSRDSISVPTWTGKSGTAGAPSSVRQKFGSTVNSQLIKSSDSSS---SNKSNLKGIAAGT 1081
Query: 182 TAGRALSSSELLARIRGNQQSAIGDGIEQQIGLASRSGRANPS-NNGTVRSSHNLSGVQP 358
+AG+ALSS+ELLARIRGNQ+ A+G G++QQ G AS SG + S N+G + LS VQP
Sbjct: 1082 SAGKALSSAELLARIRGNQERAVGAGLDQQFGFASSSGTSAMSENSGASKPPQTLSSVQP 1141
Query: 359 EVLIRQICTFLQERGGRTDSDTIVQHFRDKIPSKDRTLFKNLLKEIATLEKNPSGSSWVL 538
E+LIRQICTF+Q RGG +DS +IVQHF+D+IPSKD LFKNLLKEIA+L ++ +G WVL
Sbjct: 1142 EILIRQICTFIQRRGGSSDSSSIVQHFKDRIPSKDLPLFKNLLKEIASLREDANGKQWVL 1201
Query: 539 KQEY 550
K EY
Sbjct: 1202 KPEY 1205
>ref|XP_003541362.1| PREDICTED: DNA repair and recombination protein RAD26-like [Glycine
max]
Length = 1210
Score = 219 bits (559), Expect = 2e-55
Identities = 115/187 (61%), Positives = 146/187 (78%), Gaps = 4/187 (2%)
Frame = +2
Query: 2 RSRESIAVPTWTGRSGAAGAPSSVRSRFGSTVNTQIISSSRPSEELLNSEERKLT--VAA 175
RS +S++VPTWTGRSG AGAPSSV+ +FGSTVN Q++++S+ S+EL N K+ AA
Sbjct: 1024 RSHDSVSVPTWTGRSGTAGAPSSVKRKFGSTVNPQLVNNSKASDELPNKGTNKINGFAAA 1083
Query: 176 GATAGRALSSSELLARIRGNQQSAIGDGIEQQIGLASRSGRANPSNNGTVRSSHNL--SG 349
GA+AG+ALSS+ELLA+IRGNQ+ AIG G+E Q G++S S N +G VRSS S
Sbjct: 1084 GASAGKALSSAELLAQIRGNQEKAIGAGLEHQFGVSSSS--TNQPRSGDVRSSRATENSS 1141
Query: 350 VQPEVLIRQICTFLQERGGRTDSDTIVQHFRDKIPSKDRTLFKNLLKEIATLEKNPSGSS 529
VQPEVLIR+ICTF+Q+RGG +DS +IVQ+F+D+IPSKD LFKNLLKEIATL K +GS
Sbjct: 1142 VQPEVLIRKICTFIQQRGGSSDSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSY 1201
Query: 530 WVLKQEY 550
WVLK +Y
Sbjct: 1202 WVLKPDY 1208