BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00031210
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    79   7e-13
ref|XP_002518871.1| conserved hypothetical protein [Ricinus comm...    78   1e-12
ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus c...    76   4e-12
ref|XP_002533006.1| RNA binding protein, putative [Ricinus commu...    74   2e-11
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    71   1e-10

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
           At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 46/156 (29%), Positives = 66/156 (42%)
 Frame = -2

Query: 568 CLRTKSQLRTKQVEVNVVCLMCNIEHETIHHVNVSCSFASACWTKTEVLVINMQNITFAD 389
           CL T+  L  + V+  + C +C  E ET  H  V C  A   W ++ + ++     +F D
Sbjct: 531 CLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNFGSFVD 590

Query: 388 WLQLVFEIPDIRIHQIAAMVGWSLWKCRNEVVWNQKSMEVSEVVESAKKATLSQWIHAQD 209
           WL  +F   D  +      V W LW  RN+VVWN +     +VV       L  W HA  
Sbjct: 591 WLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGC-FTMLESWFHAN- 648

Query: 208 RSFDNFLGLMTPADGDEHWTLPTENMIKVNTDAAIF 101
              +     +T       W  P    IK+N D A+F
Sbjct: 649 ---ETLATAVTVPSYSSKWQKPDYGWIKINVDGAVF 681


>ref|XP_002518871.1| conserved hypothetical protein [Ricinus communis]
           gi|223541858|gb|EEF43404.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 668

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 56/181 (30%), Positives = 76/181 (41%), Gaps = 3/181 (1%)
 Frame = -2

Query: 568 CLRTKSQLRTKQVEVNVVCLMCNIEHETIHHVNVSCSFASACWTKTEVLVINMQNITFAD 389
           C+RT   LR + V+++ +C  CN E ET+ HV   CS A  CW                 
Sbjct: 451 CIRTAMNLRMRYVDLDPLCKWCNREPETLFHVLFGCSMARECWDLLGFRFSFPTESPICS 510

Query: 388 WLQLVFEIPDIRIHQIAAMVGWSLWKCRNEVVWNQKSMEVSEVVESAKKATLSQWIHAQD 209
           W+Q  F           A+V  SLW  RN  VWN++S     V+  A +  L Q   AQ 
Sbjct: 511 WIQNFFIDNHEDTCAKMALVCGSLWNQRNHWVWNKQSNTTYGVISPANQ-LLEQRTRAQS 569

Query: 208 RSFDNFLGLMTPADGDEHWTLPTENMIKVNTDAAIF---EPTNYSVVAWNHKGDLIEARS 38
              +    L    D    WT P    +K+NTD A+F          V  +  G +I ARS
Sbjct: 570 ADEEIAPPLGHNTDVTRKWTKPELGWLKINTDTALFLKQGRIGLGCVVRDSNGRMIMARS 629

Query: 37  K 35
           +
Sbjct: 630 E 630


>ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus communis]
           gi|223534693|gb|EEF36385.1| hypothetical protein
           RCOM_0596960 [Ricinus communis]
          Length = 270

 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
 Frame = -2

Query: 544 RTKQVEVNVVCLMCNIEHETIHHVNVSCSFASACWTKTEVLVINMQNITFADWLQLVFEI 365
           R  +++   +C +C+   E+I+H  + CSF    W  + ++    +N +  DWLQ +F  
Sbjct: 73  RCLRIDNQNLCPLCSNPGESIYHALIDCSFVKEVWVISVLVSRGNRNGSICDWLQEIFTK 132

Query: 364 PDIRIHQIAAMVGWSLWKCRNEVVWNQKSMEVSEVVESAKKATLSQWIHAQDRSFDNFLG 185
            D       A + W+LW  RNEVVWN K  +  ++V+ A    L +W+ AQ  +      
Sbjct: 133 FDKSTWHCIAAIVWNLWIHRNEVVWNSKRKQPRQIVDGA-VTYLQRWLIAQQTN------ 185

Query: 184 LMTPADGDEH---------WTLPTENMIKVNTDAAIFEPTNY---SVVAWNHKGDLIEAR 41
              P   D +         W  P    +K N DA+ F          V  N +G L+ AR
Sbjct: 186 ---PPSPDNNEVFNHNLAKWKKPKSGSLKCNVDASTFNQQGMIGAGYVLRNTEGALLGAR 242


>ref|XP_002533006.1| RNA binding protein, putative [Ricinus communis]
           gi|223527217|gb|EEF29381.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 197

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 7/191 (3%)
 Frame = -2

Query: 553 SQLRTKQVEVNVVCLMCNIEHETIHHVNVSCSFASACWTKTEVLVINMQNITFADWLQLV 374
           S L  K+V V  +C +C+   E+I++  + CSF    W  + ++    +N +  DWLQ +
Sbjct: 2   SNLVLKRVNVQDLCPLCSKPGESIYYALIDCSFVKEVWVISVLISRGNRNGSICDWLQEM 61

Query: 373 FEIPDIRIHQIAAMVGWSLWKCRNEVVWNQKSMEVSEVVESAKKATLSQWIHAQDR---S 203
           F   +       A++ W+LW  RNEVVW  K  + +++V+ A    L +W+ AQ     S
Sbjct: 62  FTKFEKSTWGCIAVLVWNLWIHRNEVVWYSKRKQPTQIVDGA-VTYLHKWLIAQQTNPPS 120

Query: 202 FDNFLGLMTPADGDEHWTLPTENMIKVNTDAAIFEPTNY---SVVAWNHKGDLIEAR-SK 35
            DN  GL         W  P     K N DAAIF          V  N +G  I AR + 
Sbjct: 121 PDN-SGLF--HHNLAKWKKPKTGWPKCNIDAAIFNQQGMIGADCVLRNTEGAFIGARINS 177

Query: 34  GVRGCIAPEIA 2
            V+  + P++A
Sbjct: 178 FVQSDLNPKLA 188


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
 Frame = -2

Query: 571 GCLRTKSQLRTKQVEVNVVCLMCNIEHETIHHVNVSCSFASACWTKTEVLVINMQN--IT 398
           G L T ++LR++ ++ + +C  C IE ETIHH+  +C +  + W    +++ N      +
Sbjct: 56  GALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSS 115

Query: 397 FADWLQLVFEIPDIRIHQ-----IAAMVGWSLWKCRNEVVWNQKSMEVS-EVVESAKKAT 236
           F D L  + ++   +        +   + W LWK RN  ++ QK      E  +  + AT
Sbjct: 116 FEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDAT 175

Query: 235 LSQWIHAQDRSFDNFL-----GLMTPADGDEHWTLPTENMIKVNTDAAIFEPTNYSVVAW 71
             +W++A + + +  +      + T       W  P E  +K N D+   + + Y+   W
Sbjct: 176 --EWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGW 233