BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00029381
         (527 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    80   2e-13
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    76   3e-12
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    73   2e-11
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    73   2e-11
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    72   4e-11

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
 Frame = +3

Query: 3    WVAMHGRLPTLQRLSSFGILTNNRCFLCIDAVENQQHLFISCYYSRYILSKLFNLITMTS 182
            W+ +  RL T  R+ ++       C LC +A E + HLF SC Y+ Y+   L   +  T+
Sbjct: 1372 WLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTN 1431

Query: 183  LPHSWSEMITFLLSLTSPHRDIAFL---AFQIFIHHVWRERNFRAHDRELFTPERLLKRI 353
                W+ + T L +   P RD  FL    FQ  I+H+WRERN R H        RL+K I
Sbjct: 1432 YSRDWNRLFTLLCTSNLP-RDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLI 1490

Query: 354  ILDLRSRASS 383
               +R+R SS
Sbjct: 1491 DKTVRNRISS 1500


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   WVAMHGRLPTLQRLSSFGILTNNRCFLCIDAVENQQHLFISCYYSRYILSKLFNLITMTS 182
           W+A   RL T  R+ S+    N  C  C +  E + HLF +C YSR + S L + +    
Sbjct: 293 WLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRH 352

Query: 183 LPHSWSEMITFLLSLTSPHRDIAFL--AFQIFIHHVWRERNFRAHDRELFTPERLLKRII 356
               W+ ++  L   T  +  +  L  AFQI ++ +W+ERN R H  E      LLKR+ 
Sbjct: 353 YSTDWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLLKRLD 412

Query: 357 LDLRSRASS 383
            ++R++ S+
Sbjct: 413 KEVRNKLST 421


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   WVAMHGRLPTLQRLSSFGILTNNRCFLCIDAVENQQHLFISCYYSRYILSKLFNLITMTS 182
           W+A H RL T  RL  +       C  C + +E + HLF SC YS  I   L   +    
Sbjct: 129 WLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGR 188

Query: 183 LPHSWSEMITFLLSLTSPHRDIAFL--AFQIFIHHVWRERNFRAHDRELFTPERLLKRII 356
              SWS +   LL  + P+  +  L   FQ  IH +WRERN R H        +L K I 
Sbjct: 189 NVSSWSLITPHLLDSSQPYLHVFTLRYTFQALIHSLWRERNGRRHGEPAIPASKLTKLID 248

Query: 357 LDLRSRASS 383
            ++R+R S+
Sbjct: 249 KNIRNRFST 257


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   WVAMHGRLPTLQRLSSFGILTNNRCFLCIDAVENQQHLFISCYYSRYILSKLFNLITMTS 182
           W+A H RL T  RL  +       C  C + +E + HLF SC YS  I   L   +    
Sbjct: 297 WLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGR 356

Query: 183 LPHSWSEMITFLLSLTSPHRDIAFL--AFQIFIHHVWRERNFRAHDRELFTPERLLKRII 356
              SWS +   LL  + P+  +  L   FQ  IH +WRERN R H        +L K I 
Sbjct: 357 NVSSWSLITPHLLDSSQPYLHVFTLRYTFQALIHSLWRERNGRRHGEPAIPASKLTKLID 416

Query: 357 LDLRSRASS 383
            ++R+R S+
Sbjct: 417 KNIRNRFST 425


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
 Frame = +3

Query: 3    WVAMHGRLPTLQRLSSFGILTNNRCFLCIDAVENQQHLFISCYYSRYILSKLFNLITMTS 182
            W+A+  RL T  R+ ++   T   C  C   +E + HLF  C YS  I + +   +    
Sbjct: 796  WLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDR 855

Query: 183  LPHSWSEMITFLLSLTSPHRDIAFLA---FQIFIHHVWRERNFRAHDRELFTPERLLKRI 353
                WS ++ + +S + P R  +FL+   FQ+ IH +WRERN R H  +  +   L+++I
Sbjct: 856  FSTKWSAVVNY-ISDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQI 914

Query: 354  ILDLRSRASS 383
               +R++ S+
Sbjct: 915  DKTIRNQLST 924