BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00029102
         (989 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             238   5e-98
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             206   1e-92
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   218   2e-90
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   191   8e-90
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                205   1e-88

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  238 bits (606), Expect(2) = 5e-98
 Identities = 118/199 (59%), Positives = 146/199 (73%), Gaps = 2/199 (1%)
 Frame = +2

Query: 5    IGSSLQEPVRT*LIIFLRNNLDVFAWGHSD--GRDPNIIFHKLNINPARKGVR*KRRPMG 178
            +G+ +   +R  LI  L+ N   FAW   D  G DP I  H+LN++P  K V+ KRR +G
Sbjct: 774  VGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLG 833

Query: 179  QERAEALKEEVGKLFKAGLIRESFYPDWLANPVLVKKPNGKWRTCIDFTDHNKACPKDNF 358
             ERA A+ EEV KL KAG I E  YP+WLANPV+VKK NGKWR C+D+TD NKACPKD++
Sbjct: 834  PERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSY 893

Query: 359  PLPKID*LVDATTGHALLSFMDAYSGYNQILMYEPDQEHTSFIIDRGLYYYIGMPFGLVN 538
            PLP ID LV+AT+G+ LLSFMDA+SGYNQILM++ DQE TSF+ DRG Y Y  M FGL N
Sbjct: 894  PLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKN 953

Query: 539  ARATYQRLVNRMLAERLAR 595
            A ATYQR VN+MLA+++ R
Sbjct: 954  AGATYQRFVNKMLADQIGR 972



 Score =  147 bits (371), Expect(2) = 5e-98
 Identities = 70/135 (51%), Positives = 100/135 (74%)
 Frame = +1

Query: 583  EIGKTMEVYMDNMLVKSKKTGDHVKHLAEMFEILRQYRMKLNPAKYVFGVESGNFLGFMV 762
            +IG+T+EVY+D+MLVKS K  DHV+HL++ F++L  Y MKLNP K  FGV SG FLG++V
Sbjct: 969  QIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVV 1028

Query: 763  NHRGIEANPEKINALLQMRLPIMVKEVQSLT*QIAALNRLVSKALDKCKEFFEVIKGGKK 942
              RGIEANP++I A+L++  P   +EVQ LT +IAALNR +S++ DKC  F+ ++K   +
Sbjct: 1029 TKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQ 1088

Query: 943  FVWNEACEIAFQNIK 987
            F W++  E AF+ +K
Sbjct: 1089 FDWDKDSEEAFEKLK 1103


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  206 bits (524), Expect(2) = 1e-92
 Identities = 103/167 (61%), Positives = 127/167 (76%)
 Frame = +2

Query: 95  GRDPNIIFHKLNINPARKGVR*KRRPMGQERAEALKEEVGKLFKAGLIRESFYPDWLANP 274
           G +P+II H+LN++P+ K V+ KRR +G ERA+ + +EV KL K G IRE  YP+W+AN 
Sbjct: 3   GINPSIICHELNVDPSFKPVKQKRRKLGVERAKIVNDEVDKLLKIGSIREVQYPEWVANT 62

Query: 275 VLVKKPNGKWRTCIDFTDHNKACPKDNFPLPKID*LVDATTGHALLSFMDAYSGYNQILM 454
           V+VKK NGK R CIDFTD NKACPKD+FPLP ID LV++T G+ LL+FMDA+SG NQI+M
Sbjct: 63  VVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMM 122

Query: 455 YEPDQEHTSFIIDRGLYYYIGMPFGLVNARATYQRLVNRMLAERLAR 595
              DQE TSFI DRG+Y Y  MPFGL NA ATYQRLVN+M    L +
Sbjct: 123 NPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGK 169



 Score =  161 bits (407), Expect(2) = 1e-92
 Identities = 80/134 (59%), Positives = 99/134 (73%)
 Frame = +1

Query: 586 IGKTMEVYMDNMLVKSKKTGDHVKHLAEMFEILRQYRMKLNPAKYVFGVESGNFLGFMVN 765
           +GKTMEVY+D+MLVKS K  DHVKHL E F IL +Y+MKLNPAK  FGV SG FLG++V 
Sbjct: 167 LGKTMEVYIDDMLVKSLKKEDHVKHLEECFGILNKYQMKLNPAKCTFGVPSGEFLGYIVT 226

Query: 766 HRGIEANPEKINALLQMRLPIMVKEVQSLT*QIAALNRLVSKALDKCKEFFEVIKGGKKF 945
            RGIEAN  +INA L M  P   KEVQ LT +IAALNR +S++ DK   F++++KG K F
Sbjct: 227 ERGIEANSNQINAFLNMPSPRNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKGF 286

Query: 946 VWNEACEIAFQNIK 987
           +W+E CE AF  +K
Sbjct: 287 LWDEKCEEAFGQLK 300


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  218 bits (555), Expect(2) = 2e-90
 Identities = 110/185 (59%), Positives = 133/185 (71%), Gaps = 2/185 (1%)
 Frame = +2

Query: 41   LIIFLRNNLDVFAWGHSD--GRDPNIIFHKLNINPARKGVR*KRRPMGQERAEALKEEVG 214
            L+ FLR N   FAW   D  G D  +  H+LN++P  K ++ KRR +G +R + + EEV 
Sbjct: 744  LVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVK 803

Query: 215  KLFKAGLIRESFYPDWLANPVLVKKPNGKWRTCIDFTDHNKACPKDNFPLPKID*LVDAT 394
            KL  AG I E  YPDWL NPV+VKK NGKWR CIDFTD NKACPKD+FPLP ID LV+AT
Sbjct: 804  KLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEAT 863

Query: 395  TGHALLSFMDAYSGYNQILMYEPDQEHTSFIIDRGLYYYIGMPFGLVNARATYQRLVNRM 574
             G+ LLSFMDA+SGYNQILM++ D+E T FI D+G Y Y  MPFGL NA ATY RLVN+M
Sbjct: 864  AGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQM 923

Query: 575  LAERL 589
              ++L
Sbjct: 924  FTDQL 928



 Score =  142 bits (357), Expect(2) = 2e-90
 Identities = 62/128 (48%), Positives = 95/128 (74%)
 Frame = +1

Query: 583  EIGKTMEVYMDNMLVKSKKTGDHVKHLAEMFEILRQYRMKLNPAKYVFGVESGNFLGFMV 762
            ++  +MEVY+D+MLVKS +  +H+ HL + F++L +Y MKLNP+K  FGV SG FLG++V
Sbjct: 927  QLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLV 986

Query: 763  NHRGIEANPEKINALLQMRLPIMVKEVQSLT*QIAALNRLVSKALDKCKEFFEVIKGGKK 942
              RGIEANP++I+A++ +  P   +EVQ L  +IAALNR +S++ DKC  F+++++  K+
Sbjct: 987  TRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKR 1046

Query: 943  FVWNEACE 966
            F W+E CE
Sbjct: 1047 FEWDEKCE 1054


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  191 bits (484), Expect(2) = 8e-90
 Identities = 95/144 (65%), Positives = 111/144 (77%)
 Frame = +2

Query: 164 RRPMGQERAEALKEEVGKLFKAGLIRESFYPDWLANPVLVKKPNGKWRTCIDFTDHNKAC 343
           RR +G ERA+A+ +EV KL K G IRE  YPDWLAN V+VKK NGK R CIDFTD NKAC
Sbjct: 469 RRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKAC 528

Query: 344 PKDNFPLPKID*LVDATTGHALLSFMDAYSGYNQILMYEPDQEHTSFIIDRGLYYYIGMP 523
           PKD+FPLP ID LV++T G+ LLSFMDA+SGYNQI+M   DQE T FI DRG+Y Y  MP
Sbjct: 529 PKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMP 588

Query: 524 FGLVNARATYQRLVNRMLAERLAR 595
           FGL NA ATY RLVN+M +E + +
Sbjct: 589 FGLRNAGATYPRLVNKMFSEHVGK 612



 Score =  167 bits (422), Expect(2) = 8e-90
 Identities = 81/134 (60%), Positives = 101/134 (75%)
 Frame = +1

Query: 586  IGKTMEVYMDNMLVKSKKTGDHVKHLAEMFEILRQYRMKLNPAKYVFGVESGNFLGFMVN 765
            +GKTMEVY+D+ML+KS K  DHVKHL E F IL QY+MKLNPAK  FGV SG FLG++V 
Sbjct: 610  VGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVT 669

Query: 766  HRGIEANPEKINALLQMRLPIMVKEVQSLT*QIAALNRLVSKALDKCKEFFEVIKGGKKF 945
             RGIEANP +INA L M  P   KEVQ LT +IAALNR +S++ DK   F++++KG K+F
Sbjct: 670  KRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEF 729

Query: 946  VWNEACEIAFQNIK 987
            +W+E CE AF  +K
Sbjct: 730  LWDEKCEEAFGQLK 743


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  205 bits (522), Expect(2) = 1e-88
 Identities = 107/199 (53%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
 Frame = +2

Query: 5   IGSSLQEPVRT*LIIFLRNNLDVFAWGHSD--GRDPNIIFHKLNINPARKGVR*KRRPMG 178
           +GS L    R  ++ FL++N+DVFAW   D  G DP  I H LN++      +   R   
Sbjct: 43  VGSQLPALEREEVVQFLQDNIDVFAWTTYDVSGIDPEFICHHLNVSHNAMPRKQPPRHAS 102

Query: 179 QERAEALKEEVGKLFKAGLIRESFYPDWLANPVLVKKPNGKWRTCIDFTDHNKACPKDNF 358
           QE AEA+KEEV KL +AG I+E FYP+WLAN V+VKK NGKWR C+DFTD NKACPKD F
Sbjct: 103 QEHAEAVKEEVNKLKQAGAIKEIFYPEWLANTVVVKKKNGKWRVCVDFTDLNKACPKDPF 162

Query: 359 PLPKID*LVDATTGHALLSFMDAYSGYNQILMYEPDQEHTSFIIDRGLYYYIGMPFGLVN 538
           P+P+ID LVDAT  H  +SF+DA+  Y+QI M   DQE T+F    G Y+Y  MPFGL N
Sbjct: 163 PIPRIDQLVDATVRHPRMSFLDAFQNYHQIPMSLNDQEKTAFRTPNGNYHYRVMPFGLKN 222

Query: 539 ARATYQRLVNRMLAERLAR 595
           A +TYQR+V RM   +L R
Sbjct: 223 AGSTYQRMVTRMFDSQLGR 241



 Score =  148 bits (374), Expect(2) = 1e-88
 Identities = 62/135 (45%), Positives = 100/135 (74%)
 Frame = +1

Query: 583 EIGKTMEVYMDNMLVKSKKTGDHVKHLAEMFEILRQYRMKLNPAKYVFGVESGNFLGFMV 762
           ++G+TME Y+D+M++KSKK GDH+K L E F +LR+++++LN +K  FGV+SG FLG+M+
Sbjct: 238 QLGRTMEAYIDDMVIKSKKVGDHLKDLHETFSVLRKHKLRLNASKCSFGVDSGKFLGYMI 297

Query: 763 NHRGIEANPEKINALLQMRLPIMVKEVQSLT*QIAALNRLVSKALDKCKEFFEVIKGGKK 942
            HRGIE NP++I A+L++  P   KEVQ L    A LNR +S++ D+C+ F+ ++   K 
Sbjct: 298 THRGIEFNPDQIKAILELHPPRNPKEVQKLAGMFAVLNRFISRSADRCRPFYRLLHKWKD 357

Query: 943 FVWNEACEIAFQNIK 987
           F+W + C +AF++++
Sbjct: 358 FLWTDECNLAFEDLR 372