BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028703
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   135   5e-30
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                134   1e-29
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   129   2e-28
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   129   2e-28
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   126   2e-27

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  135 bits (339), Expect = 5e-30
 Identities = 60/126 (47%), Positives = 87/126 (69%)
 Frame = -3

Query: 378  DVLAGVSSFFSSSVLPRAINYTAIALIPKQDNPSAISQFRPISCCNVLYKCVAKVLAGRL 199
            D +A + SFF    LP+ +N T +ALIPK+D    +  +RPISCCNVLYK ++K+LA RL
Sbjct: 788  DFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRL 847

Query: 198  KSVLNQIIYENQATFISKRVIGDHILLAQSLCHNYHTSYGSPRCTIKLDISKAFDSLNWD 19
            K +L   I +NQ+ F+ +R++ +++LLA  L  +YH    +PRC +K+DISKAFDS+ W 
Sbjct: 848  KLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQ 907

Query: 18   FLLKAM 1
            FLL  +
Sbjct: 908  FLLNTL 913


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  134 bits (336), Expect = 1e-29
 Identities = 59/126 (46%), Positives = 88/126 (69%)
 Frame = -3

Query: 378 DVLAGVSSFFSSSVLPRAINYTAIALIPKQDNPSAISQFRPISCCNVLYKCVAKVLAGRL 199
           D +A + SFF    LP+ +N T +ALIPK+D  + +  +RPISCCNV+YK ++K++A RL
Sbjct: 64  DFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRL 123

Query: 198 KSVLNQIIYENQATFISKRVIGDHILLAQSLCHNYHTSYGSPRCTIKLDISKAFDSLNWD 19
           K +L   I +NQ+ F+ +R++ +++LLA  L  +YH    SPRC +K+DISKAFDS+ W 
Sbjct: 124 KVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQ 183

Query: 18  FLLKAM 1
           FLL  +
Sbjct: 184 FLLNTL 189


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  129 bits (325), Expect = 2e-28
 Identities = 59/122 (48%), Positives = 83/122 (68%)
 Frame = -3

Query: 378 DVLAGVSSFFSSSVLPRAINYTAIALIPKQDNPSAISQFRPISCCNVLYKCVAKVLAGRL 199
           +V+  + SFF+   LP+ +N T +ALIPK+     I  +RPISCCNVLYK ++K+LA RL
Sbjct: 212 EVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRL 271

Query: 198 KSVLNQIIYENQATFISKRVIGDHILLAQSLCHNYHTSYGSPRCTIKLDISKAFDSLNWD 19
           K +L + I  NQ+ F+  R++ +++LLA  L  +YH    S RC +K+DISKAFDSL W 
Sbjct: 272 KRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWS 331

Query: 18  FL 13
           FL
Sbjct: 332 FL 333


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  129 bits (325), Expect = 2e-28
 Identities = 60/126 (47%), Positives = 86/126 (68%)
 Frame = -3

Query: 378  DVLAGVSSFFSSSVLPRAINYTAIALIPKQDNPSAISQFRPISCCNVLYKCVAKVLAGRL 199
            +V   + SFF+   LP+ +N T +ALIPK+     +  +RPISCCNVLYK ++K+LA RL
Sbjct: 757  EVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRL 816

Query: 198  KSVLNQIIYENQATFISKRVIGDHILLAQSLCHNYHTSYGSPRCTIKLDISKAFDSLNWD 19
            K +L + I  NQ+ FIS R++ +++LLA  L  +YH    SPRC +K+D+SKAFDS+ W 
Sbjct: 817  KCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWP 876

Query: 18   FLLKAM 1
            FLL  +
Sbjct: 877  FLLNTL 882


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  126 bits (316), Expect = 2e-27
 Identities = 56/126 (44%), Positives = 84/126 (66%)
 Frame = -3

Query: 378 DVLAGVSSFFSSSVLPRAINYTAIALIPKQDNPSAISQFRPISCCNVLYKCVAKVLAGRL 199
           + +  + SFF+   LP+ IN T +ALIPK+     +  +RPISCCNVLYK ++K++A RL
Sbjct: 379 EFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRL 438

Query: 198 KSVLNQIIYENQATFISKRVIGDHILLAQSLCHNYHTSYGSPRCTIKLDISKAFDSLNWD 19
           K VL + I  NQ+ F+  R++ +++LLA  +  +YH    S RC +K+DISKAFDS+ W 
Sbjct: 439 KLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWK 498

Query: 18  FLLKAM 1
           FL+  +
Sbjct: 499 FLINVL 504